FFCP PHASE1:Hg19::chr16:56742627..56742637,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:56742627..56742637,+ | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_at_chr16:56742627..56742637,+ | |description=CAGE_peak_at_chr16:56742627..56742637,+ | ||
|id=chr16:56742627..56742637,+ | |id=chr16:56742627..56742637,+ | ||
|ontology_enrichment_celltype=CL:0000625!3.21e-53!11;CL:0000791!1.97e-51!18;CL:0000789!1.97e-51!18;CL:0002420!1.97e-51!18;CL:0002419!1.97e-51!18;CL:0000790!1.97e-51!18;CL:0000084!3.61e-36!25;CL:0000827!3.61e-36!25;CL:0000838!8.60e-16!52;CL:0000542!1.95e-15!53;CL:0000051!1.95e-15!53;CL:0000624!6.13e-08!6;CL:0000738!2.55e-07!140;CL:0002087!4.65e-07!119 | |ontology_enrichment_celltype=CL:0000625!3.21e-53!11;CL:0000791!1.97e-51!18;CL:0000789!1.97e-51!18;CL:0002420!1.97e-51!18;CL:0002419!1.97e-51!18;CL:0000790!1.97e-51!18;CL:0000084!3.61e-36!25;CL:0000827!3.61e-36!25;CL:0000838!8.60e-16!52;CL:0000542!1.95e-15!53;CL:0000051!1.95e-15!53;CL:0000624!6.13e-08!6;CL:0000738!2.55e-07!140;CL:0002087!4.65e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000625;1.10e-18;11!CL:0000791;1.07e-11;18!CL:0000789;1.07e-11;18!CL:0002419;1.07e-11;18!CL:0000084;1.34e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,1.32e-18,11;CL:0000791,1.19e-11,18;CL:0000789,1.19e-11,18;CL:0002420,1.19e-11,18;CL:0002419,1.19e-11,18;CL:0000790,1.19e-11,18;CL:0000084,1.45e-08,25;CL:0000827,1.45e-08,25 | |||
|ontology_enrichment_development_v019=UBERON:0006965;2.74e-12;2!CL:0000790;1.07e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.48e-11!7;UBERON:0002106!5.05e-07!3;UBERON:0004854!5.05e-07!3;UBERON:0009034!5.05e-07!3;UBERON:0002095!5.05e-07!3;UBERON:0004782!5.05e-07!3;UBERON:0003281!5.05e-07!3;UBERON:0009664!5.05e-07!3;UBERON:0002296!5.05e-07!3;UBERON:0005602!5.05e-07!3;UBERON:0001179!5.05e-07!3;UBERON:0006293!5.05e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.55e-45;2!UBERON:0005058;2.55e-45;2!UBERON:0009113;2.55e-45;2!UBERON:0004177;7.91e-19;5!UBERON:0005057;7.91e-19;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.63e-23,4;UBERON:0005058,2.63e-23,4;UBERON:0009113,2.63e-23,4;UBERON:0003295,2.63e-23,4;UBERON:0005562,2.63e-23,4;UBERON:0003351,6.71e-16,6;UBERON:0004177,8.94e-14,7;UBERON:0005057,8.94e-14,7;UBERON:0000974,6.20e-10,10;UBERON:0003408,6.20e-10,10;UBERON:0001042,6.20e-10,10;UBERON:0009145,6.20e-10,10;UBERON:0006562,4.08e-09,11;UBERON:0009722,4.08e-09,11;UBERON:0007690,4.08e-09,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0,0.501559486172034,0.651844533267181,1.4203434172042,1.94826728407911,0.111410456885174,0,0,0.541607727530031,0.128091319725675,0,0,0,0,0.14828656316206,0,1.04535523804977,0,0,0.34362744548263,0.253019692019503,0.637130828648193,1.30216690771284,0.950452044448374,0.301150238155546,0.383959833463255,1.24930726552346,0.236777252044017,2.46338399076314,0.604820229674197,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0.569647187174163,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51896748360424,2.97958628620118,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,1.40891655513718,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0,0.501559486172034,0.651844533267181,1.4203434172042,1.94826728407911,0.111410456885174,0,0,0.541607727530031,0.128091319725675,0,0,0,0,0.14828656316206,0,1.04535523804977,0,0,0.34362744548263,0.253019692019503,0.637130828648193,1.30216690771284,0.950452044448374,0.301150238155546,0.383959833463255,1.24930726552346,0.236777252044017,2.46338399076314,0.604820229674197,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0.569647187174163,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51896748360424,2.97958628620118,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,1.40891655513718,0 | ||
|short_description=p@chr16:56742627..56742637,+ | |short_description=p@chr16:56742627..56742637,+ | ||
}} | }} |
Latest revision as of 10:25, 25 July 2015
Short description: | p@chr16:56742627..56742637, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:56742627..56742637, + |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 1.32e-18 | 11 |
mature alpha-beta T cell | 1.19e-11 | 18 |
alpha-beta T cell | 1.19e-11 | 18 |
immature T cell | 1.19e-11 | 18 |
mature T cell | 1.19e-11 | 18 |
immature alpha-beta T cell | 1.19e-11 | 18 |
T cell | 1.45e-08 | 25 |
pro-T cell | 1.45e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.63e-23 | 4 |
hemolymphoid system gland | 2.63e-23 | 4 |
thymic region | 2.63e-23 | 4 |
pharyngeal gland | 2.63e-23 | 4 |
thymus primordium | 2.63e-23 | 4 |
pharyngeal epithelium | 6.71e-16 | 6 |
hemopoietic organ | 8.94e-14 | 7 |
immune organ | 8.94e-14 | 7 |
neck | 6.20e-10 | 10 |
gland of gut | 6.20e-10 | 10 |
chordate pharynx | 6.20e-10 | 10 |
pharyngeal region of foregut | 6.20e-10 | 10 |
pharynx | 4.08e-09 | 11 |
entire pharyngeal arch endoderm | 4.08e-09 | 11 |
early pharyngeal endoderm | 4.08e-09 | 11 |