FFCP PHASE1:Hg19::chr16:2906495..2906549,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:2906495..2906549,+ to FFCP PHASE1:Hg19::chr16:2906495..2906549,+: NSchange) |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:2906495..2906549,+ | |||
|description=CAGE_peak_at_chr16:2906495..2906549,+ | |||
|id=chr16:2906495..2906549,+ | |||
|ontology_enrichment_celltype=CL:0000223!2.33e-17!59;CL:0002076!2.49e-17!43;CL:0000066!2.28e-15!254;CL:0000039!2.90e-08!7;CL:0000586!2.90e-08!7;CL:0002251!5.70e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002231;4.16e-09;3!CL:0002541;4.65e-09;3!CL:1000415;3.19e-07;2!CL:0002076;5.55e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.93e-12,253;CL:0000223,1.02e-09,58;CL:0002541,5.13e-09,3;CL:0002231,5.13e-09,3;CL:0002076,1.72e-08,42;CL:1000415,3.20e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.17e-21!106;DOID:0050687!2.71e-17!143;DOID:299!1.58e-12!25;DOID:1749!1.84e-09!14;DOID:14566!1.03e-08!239;DOID:162!2.52e-08!235 | |||
|ontology_enrichment_disease_v019=DOID:299;8.64e-14;25!DOID:1749;2.93e-09;14!DOID:3493;2.59e-07;2!DOID:3910;4.10e-07;2!DOID:305;9.45e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.06e-22,106;DOID:0050687,3.63e-16,143;DOID:299,7.58e-14,25;DOID:14566,9.56e-10,239;DOID:162,1.72e-09,235;DOID:1749,2.79e-09,14;DOID:3493,2.60e-07,2;DOID:3910,4.17e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.69e-17!169;UBERON:0000925!2.69e-17!169;UBERON:0006595!2.69e-17!169;UBERON:0001007!6.72e-14!155;UBERON:0001555!6.72e-14!155;UBERON:0007026!6.72e-14!155;UBERON:0004921!1.05e-12!129;UBERON:0004185!1.05e-12!129;UBERON:0000464!4.42e-12!104;UBERON:0000466!1.18e-11!126;UBERON:0000077!1.81e-11!130;UBERON:0005911!1.90e-10!82;UBERON:0005156!1.08e-09!59;UBERON:0000990!1.08e-09!59;UBERON:0000161!1.56e-09!35;UBERON:0002294!3.42e-09!7;UBERON:0001173!3.42e-09!7;UBERON:0004912!3.42e-09!7;UBERON:0000344!3.47e-09!12;UBERON:0001004!1.87e-08!72;UBERON:0001046!4.88e-08!19;UBERON:0003133!1.02e-07!48;UBERON:0002553!3.67e-07!70;UBERON:0003134!7.23e-07!37;UBERON:0000474!7.23e-07!37;UBERON:0002323!9.87e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;1.86e-14;7!UBERON:0001173;1.86e-14;7!UBERON:0002110;2.25e-09;3!UBERON:0003124;4.65e-09;3!UBERON:0000920;4.65e-09;3!UBERON:0000058;3.73e-07;10!UBERON:0004903;4.10e-07;2!UBERON:0002173;4.10e-07;2!UBERON:0002186;4.10e-07;2!UBERON:0002394;4.47e-07;4!UBERON:0003928;4.47e-07;4!UBERON:0006562;9.06e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002294,5.01e-11,9;UBERON:0001173,5.01e-11,9;UBERON:0004912,5.01e-11,9;UBERON:0002110,3.12e-09,3;UBERON:0006242,3.12e-09,3;UBERON:0000920,5.13e-09,3;UBERON:0001007,7.41e-08,145;UBERON:0001555,7.41e-08,145;UBERON:0007026,7.41e-08,145;UBERON:0005911,1.49e-07,82;UBERON:0004921,1.91e-07,118;UBERON:0004119,3.52e-07,160;UBERON:0000925,3.52e-07,160;UBERON:0006595,3.52e-07,160;UBERON:0004903,4.17e-07,2;UBERON:0002173,4.17e-07,2;UBERON:0002186,4.17e-07,2 | |||
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| ||
|short_description=p@chr16:2906495..2906549,+ | |||
}} | }} |
Latest revision as of 07:48, 25 July 2015
Short description: | p@chr16:2906495..2906549, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:2906495..2906549, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.93e-12 | 253 |
endodermal cell | 1.02e-09 | 58 |
chorionic membrane mesenchymal stem cell | 5.13e-09 | 3 |
epithelial cell of prostate | 5.13e-09 | 3 |
endo-epithelial cell | 1.72e-08 | 42 |
epithelial cell of gall bladder | 3.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
biliary system | 5.01e-11 | 9 |
biliary tree | 5.01e-11 | 9 |
biliary bud | 5.01e-11 | 9 |
gallbladder | 3.12e-09 | 3 |
gall bladder primordium | 3.12e-09 | 3 |
egg chorion | 5.13e-09 | 3 |
digestive system | 7.41e-08 | 145 |
digestive tract | 7.41e-08 | 145 |
primitive gut | 7.41e-08 | 145 |
endo-epithelium | 1.49e-07 | 82 |
subdivision of digestive tract | 1.91e-07 | 118 |
endoderm-derived structure | 3.52e-07 | 160 |
endoderm | 3.52e-07 | 160 |
presumptive endoderm | 3.52e-07 | 160 |
bronchoalveolar duct junction | 4.17e-07 | 2 |
alveolar duct | 4.17e-07 | 2 |
bronchiole | 4.17e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.06e-22 | 106 |
cell type cancer | 3.63e-16 | 143 |
adenocarcinoma | 7.58e-14 | 25 |
disease of cellular proliferation | 9.56e-10 | 239 |
cancer | 1.72e-09 | 235 |
squamous cell carcinoma | 2.79e-09 | 14 |
signet ring cell adenocarcinoma | 2.60e-07 | 2 |
lung adenocarcinoma | 4.17e-07 | 2 |