FFCP PHASE1:Hg19::chr14:22309226..22309237,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-83bp_to_uc001wbx.2,uc010tmg.1_5end | |association_with_transcript=-83bp_to_uc001wbx.2,uc010tmg.1_5end | ||
|cluster_id=chr14:22309226..22309237,+ | |||
|coexpression_cluster_id=C900 | |||
|description=CAGE_peak_4_at_uc001wbx.2_5end,CAGE_peak_4_at_uc010tmg.1_5end | |description=CAGE_peak_4_at_uc001wbx.2_5end,CAGE_peak_4_at_uc010tmg.1_5end | ||
|id=chr14:22309226..22309237,+ | |id=chr14:22309226..22309237,+ | ||
|ontology_enrichment_celltype=CL:0000791!5.04e-33!18;CL:0000789!5.04e-33!18;CL:0002420!5.04e-33!18;CL:0002419!5.04e-33!18;CL:0000790!5.04e-33!18;CL:0000624!2.12e-26!6;CL:0000084!4.88e-23!25;CL:0000827!4.88e-23!25;CL:0000898!2.89e-14!3;CL:0000625!5.75e-14!11;CL:0000838!2.23e-13!52;CL:0000542!4.57e-13!53;CL:0000051!4.57e-13!53;CL:0000842!5.25e-13!3;CL:0000815!2.53e-10!2;CL:0000792!2.53e-10!2;CL:0002677!2.53e-10!2;CL:0000224!7.04e-10!4;CL:0002087!1.57e-08!119;CL:0000738!1.43e-07!140;CL:0000080!9.89e-07!6 | |ontology_enrichment_celltype=CL:0000791!5.04e-33!18;CL:0000789!5.04e-33!18;CL:0002420!5.04e-33!18;CL:0002419!5.04e-33!18;CL:0000790!5.04e-33!18;CL:0000624!2.12e-26!6;CL:0000084!4.88e-23!25;CL:0000827!4.88e-23!25;CL:0000898!2.89e-14!3;CL:0000625!5.75e-14!11;CL:0000838!2.23e-13!52;CL:0000542!4.57e-13!53;CL:0000051!4.57e-13!53;CL:0000842!5.25e-13!3;CL:0000815!2.53e-10!2;CL:0000792!2.53e-10!2;CL:0002677!2.53e-10!2;CL:0000224!7.04e-10!4;CL:0002087!1.57e-08!119;CL:0000738!1.43e-07!140;CL:0000080!9.89e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000815;2.74e-12;2!CL:0000792;2.74e-12;2!CL:0002677;2.74e-12;2!CL:0000898;1.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000815,2.32e-12,2;CL:0000792,2.32e-12,2;CL:0002677,2.32e-12,2;CL:0000898,1.12e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.23e-15!7;UBERON:0002370!5.89e-11!4;UBERON:0005058!5.89e-11!4;UBERON:0009113!5.89e-11!4;UBERON:0003295!5.89e-11!4;UBERON:0005562!5.89e-11!4;UBERON:0000178!8.16e-10!15;UBERON:0000179!8.16e-10!15;UBERON:0000463!8.16e-10!15;UBERON:0003351!1.96e-07!6;UBERON:0001042!2.51e-07!10;UBERON:0009145!2.51e-07!10;UBERON:0000974!2.64e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.19e-45;2!UBERON:0005058;3.19e-45;2!UBERON:0009113;3.19e-45;2!UBERON:0004177;8.66e-19;5!UBERON:0005057;8.66e-19;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.29e-23,4;UBERON:0005058,3.29e-23,4;UBERON:0009113,3.29e-23,4;UBERON:0003295,3.29e-23,4;UBERON:0005562,3.29e-23,4;UBERON:0003351,7.79e-16,6;UBERON:0004177,1.02e-13,7;UBERON:0005057,1.02e-13,7;UBERON:0000974,6.78e-10,10;UBERON:0003408,6.78e-10,10;UBERON:0001042,6.78e-10,10;UBERON:0009145,6.78e-10,10;UBERON:0006562,4.43e-09,11;UBERON:0009722,4.43e-09,11;UBERON:0007690,4.43e-09,11 | |||
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| ||
|short_description=p4@uc001wbx.2,p4@uc010tmg.1 | |short_description=p4@uc001wbx.2,p4@uc010tmg.1 | ||
}} | }} |
Latest revision as of 19:05, 24 July 2015
Short description: | p4@uc001wbx.2, p4@uc010tmg.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_uc001wbx.2_5end, CAGE_peak_4_at_uc010tmg.1_5end |
Coexpression cluster: | C900_CD4_thymus_Hodgkin_CD8_CD34_chronic_CD133 |
Association with transcript: | -83bp_to_uc001wbx.2, uc010tmg.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 2.32e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.32e-12 | 2 |
naive regulatory T cell | 2.32e-12 | 2 |
naive T cell | 1.12e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.29e-23 | 4 |
hemolymphoid system gland | 3.29e-23 | 4 |
thymic region | 3.29e-23 | 4 |
pharyngeal gland | 3.29e-23 | 4 |
thymus primordium | 3.29e-23 | 4 |
pharyngeal epithelium | 7.79e-16 | 6 |
hemopoietic organ | 1.02e-13 | 7 |
immune organ | 1.02e-13 | 7 |
neck | 6.78e-10 | 10 |
gland of gut | 6.78e-10 | 10 |
chordate pharynx | 6.78e-10 | 10 |
pharyngeal region of foregut | 6.78e-10 | 10 |
pharynx | 4.43e-09 | 11 |
entire pharyngeal arch endoderm | 4.43e-09 | 11 |
early pharyngeal endoderm | 4.43e-09 | 11 |