FFCP PHASE1:Hg19::chr13:28542963..28542973,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=170bp_to_CU677005_5end | |association_with_transcript=170bp_to_CU677005_5end | ||
|cluster_id=chr13:28542963..28542973,- | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_1_at_CU677005_5end | |description=CAGE_peak_1_at_CU677005_5end | ||
|id=chr13:28542963..28542973,- | |id=chr13:28542963..28542973,- | ||
|ontology_enrichment_celltype=CL:0002563!1.08e-16!4;CL:0002253!1.65e-15!2;CL:0002251!1.60e-11!21;CL:0002178!2.71e-10!3;CL:0000223!4.59e-10!59;CL:0000319!2.89e-08!1;CL:1001319!7.16e-08!1;CL:1000600!7.16e-08!1;CL:0000083!1.16e-07!4;CL:0002076!4.13e-07!43 | |ontology_enrichment_celltype=CL:0002563!1.08e-16!4;CL:0002253!1.65e-15!2;CL:0002251!1.60e-11!21;CL:0002178!2.71e-10!3;CL:0000223!4.59e-10!59;CL:0000319!2.89e-08!1;CL:1001319!7.16e-08!1;CL:1000600!7.16e-08!1;CL:0000083!1.16e-07!4;CL:0002076!4.13e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0002253;3.61e-34;2!CL:0002563;7.35e-18;4!CL:0000182;8.14e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,3.61e-34,2;CL:0002563,7.35e-18,4;CL:0000182,7.92e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0003104;6.09e-10;31!UBERON:0004161;2.55e-07;11 | |||
|ontology_enrichment_disease=DOID:3119!1.55e-17!14;DOID:299!8.24e-13!25;DOID:305!9.50e-12!106;DOID:0050687!1.18e-10!143;DOID:3151!1.13e-08!1;DOID:3149!1.13e-08!1;DOID:3030!2.89e-08!1;DOID:162!7.24e-08!235;DOID:1793!1.16e-07!4;DOID:14566!1.27e-07!239 | |ontology_enrichment_disease=DOID:3119!1.55e-17!14;DOID:299!8.24e-13!25;DOID:305!9.50e-12!106;DOID:0050687!1.18e-10!143;DOID:3151!1.13e-08!1;DOID:3149!1.13e-08!1;DOID:3030!2.89e-08!1;DOID:162!7.24e-08!235;DOID:1793!1.16e-07!4;DOID:14566!1.27e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:3151;3.34e-66;1!DOID:3149;3.34e-66;1!DOID:3451;5.96e-34;2!DOID:4159;5.96e-34;2!DOID:0060122;5.96e-34;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,4.66e-66,1;DOID:3149,4.66e-66,1;DOID:3451,7.05e-34,2;DOID:4159,7.05e-34,2;DOID:0060122,7.05e-34,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!3.92e-30!35;UBERON:0000160!2.95e-23!27;UBERON:0003350!1.36e-22!5;UBERON:0001052!1.03e-16!4;UBERON:0001242!1.08e-16!4;UBERON:0001262!1.08e-16!4;UBERON:0004786!1.08e-16!4;UBERON:0004808!1.08e-16!4;UBERON:0001277!1.08e-16!4;UBERON:0000344!2.78e-14!12;UBERON:0004907!1.76e-13!5;UBERON:0002075!4.26e-13!18;UBERON:0001007!2.94e-12!155;UBERON:0001555!2.94e-12!155;UBERON:0007026!2.94e-12!155;UBERON:0002108!2.53e-11!14;UBERON:0004119!6.07e-11!169;UBERON:0000925!6.07e-11!169;UBERON:0006595!6.07e-11!169;UBERON:0000059!1.19e-10!11;UBERON:0004921!1.67e-10!129;UBERON:0004185!1.67e-10!129;UBERON:0002110!4.51e-10!3;UBERON:0006242!4.51e-10!3;UBERON:0000060!1.61e-09!12;UBERON:0001046!5.76e-09!19;UBERON:0000945!2.76e-08!8;UBERON:0010039!2.76e-08!8;UBERON:0004645!7.16e-08!1;UBERON:0001256!7.16e-08!1;UBERON:0001259!7.16e-08!1;UBERON:0001155!8.48e-08!9;UBERON:0000077!1.04e-07!130;UBERON:0000485!1.09e-07!9 | |ontology_enrichment_uberon=UBERON:0005409!3.92e-30!35;UBERON:0000160!2.95e-23!27;UBERON:0003350!1.36e-22!5;UBERON:0001052!1.03e-16!4;UBERON:0001242!1.08e-16!4;UBERON:0001262!1.08e-16!4;UBERON:0004786!1.08e-16!4;UBERON:0004808!1.08e-16!4;UBERON:0001277!1.08e-16!4;UBERON:0000344!2.78e-14!12;UBERON:0004907!1.76e-13!5;UBERON:0002075!4.26e-13!18;UBERON:0001007!2.94e-12!155;UBERON:0001555!2.94e-12!155;UBERON:0007026!2.94e-12!155;UBERON:0002108!2.53e-11!14;UBERON:0004119!6.07e-11!169;UBERON:0000925!6.07e-11!169;UBERON:0006595!6.07e-11!169;UBERON:0000059!1.19e-10!11;UBERON:0004921!1.67e-10!129;UBERON:0004185!1.67e-10!129;UBERON:0002110!4.51e-10!3;UBERON:0006242!4.51e-10!3;UBERON:0000060!1.61e-09!12;UBERON:0001046!5.76e-09!19;UBERON:0000945!2.76e-08!8;UBERON:0010039!2.76e-08!8;UBERON:0004645!7.16e-08!1;UBERON:0001256!7.16e-08!1;UBERON:0001259!7.16e-08!1;UBERON:0001155!8.48e-08!9;UBERON:0000077!1.04e-07!130;UBERON:0000485!1.09e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001052;7.35e-18;4!UBERON:0001242;7.35e-18;4!UBERON:0001262;7.35e-18;4!UBERON:0004786;7.35e-18;4!UBERON:0004808;7.35e-18;4!UBERON:0001277;7.35e-18;4!UBERON:0000014;9.45e-18;4!UBERON:0004907;1.40e-14;5!UBERON:0000485;8.16e-11;7!UBERON:0003929;8.16e-11;7!UBERON:0003350;1.24e-09;8!UBERON:0001155;1.04e-08;9!UBERON:0000059;2.32e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,7.35e-18,4;UBERON:0001242,7.35e-18,4;UBERON:0001262,7.35e-18,4;UBERON:0004786,7.35e-18,4;UBERON:0004808,7.35e-18,4;UBERON:0001277,7.35e-18,4;UBERON:0000014,1.03e-17,4;UBERON:0004907,1.40e-14,5;UBERON:0003350,1.24e-09,8;UBERON:0001155,1.04e-08,9;UBERON:0000485,1.04e-08,9;UBERON:0000059,2.32e-07,11 | |||
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|short_description=p1@CU677005 | |short_description=p1@CU677005 | ||
}} | }} |
Latest revision as of 15:21, 24 July 2015
Short description: | p1@CU677005 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU677005_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | 170bp_to_CU677005_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 3.61e-34 | 2 |
intestinal epithelial cell | 7.35e-18 | 4 |
hepatocyte | 7.92e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
rectum | 7.35e-18 | 4 |
intestinal mucosa | 7.35e-18 | 4 |
wall of intestine | 7.35e-18 | 4 |
gastrointestinal system mucosa | 7.35e-18 | 4 |
gastrointestinal system epithelium | 7.35e-18 | 4 |
intestinal epithelium | 7.35e-18 | 4 |
zone of skin | 1.03e-17 | 4 |
lower digestive tract | 1.40e-14 | 5 |
epithelium of mucosa | 1.24e-09 | 8 |
colon | 1.04e-08 | 9 |
simple columnar epithelium | 1.04e-08 | 9 |
large intestine | 2.32e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 4.66e-66 | 1 |
keratoacanthoma | 4.66e-66 | 1 |
skin carcinoma | 7.05e-34 | 2 |
skin cancer | 7.05e-34 | 2 |
integumentary system cancer | 7.05e-34 | 2 |