FFCP PHASE1:Hg19::chr13:109828922..109828926,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:109828922..109828926,- | |||
|description=CAGE_peak_at_chr13:109828922..109828926,- | |description=CAGE_peak_at_chr13:109828922..109828926,- | ||
|id=chr13:109828922..109828926,- | |id=chr13:109828922..109828926,- | ||
|ontology_enrichment_celltype=CL:0000066!4.88e-16!254;CL:0000076!2.03e-09!62;CL:0000077!1.48e-08!19 | |ontology_enrichment_celltype=CL:0000066!4.88e-16!254;CL:0000076!2.03e-09!62;CL:0000077!1.48e-08!19 | ||
|ontology_enrichment_celltype_v019=CL:0002623;1.43e-10;3!CL:0002251;8.83e-10;20!CL:1000415;2.18e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.96e-11,253;CL:0002623,2.18e-10,3;CL:0002251,9.48e-10,20;CL:1000415,2.30e-08,2;CL:0000223,4.37e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0001041;8.62e-10;30 | |||
|ontology_enrichment_disease=DOID:305!2.06e-31!106;DOID:0050687!1.78e-24!143;DOID:162!8.59e-19!235;DOID:14566!8.03e-18!239;DOID:1749!5.88e-14!14 | |ontology_enrichment_disease=DOID:305!2.06e-31!106;DOID:0050687!1.78e-24!143;DOID:162!8.59e-19!235;DOID:14566!8.03e-18!239;DOID:1749!5.88e-14!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;6.12e-24;14!DOID:7;3.62e-07;39!DOID:3908;4.74e-07;5!DOID:4362;4.79e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.14e-28,106;DOID:1749,5.18e-24,14;DOID:0050687,1.14e-21,143;DOID:162,2.26e-14,235;DOID:14566,7.08e-14,239;DOID:7,1.40e-08,39;DOID:3908,4.32e-07,5;DOID:4362,5.21e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002294!2.79e-07!7;UBERON:0001173!2.79e-07!7;UBERON:0004912!2.79e-07!7 | |ontology_enrichment_uberon=UBERON:0002294!2.79e-07!7;UBERON:0001173!2.79e-07!7;UBERON:0004912!2.79e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002294;3.13e-18;7!UBERON:0001173;3.13e-18;7!UBERON:0003343;8.35e-15;4!UBERON:0004785;8.35e-15;4!UBERON:0002394;1.01e-14;4!UBERON:0003928;1.01e-14;4!UBERON:0000974;7.04e-10;6!UBERON:0000058;7.05e-09;10!UBERON:0005631;4.42e-08;10!UBERON:0000158;4.42e-08;10!UBERON:0000161;4.65e-08;19!UBERON:0000166;4.65e-08;19!UBERON:0000305;8.71e-08;7!UBERON:0002423;9.84e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,6.78e-15,4;UBERON:0004785,6.78e-15,4;UBERON:0002294,5.57e-14,9;UBERON:0001173,5.57e-14,9;UBERON:0004912,5.57e-14,9;UBERON:0002394,8.48e-10,6;UBERON:0003928,8.48e-10,6;UBERON:0001007,1.03e-09,145;UBERON:0001555,1.03e-09,145;UBERON:0007026,1.03e-09,145;UBERON:0005911,1.46e-09,82;UBERON:0004119,4.29e-09,160;UBERON:0000925,4.29e-09,160;UBERON:0006595,4.29e-09,160;UBERON:0009497,1.09e-07,25;UBERON:0000015,1.09e-07,25;UBERON:0002423,1.09e-07,25;UBERON:0006235,1.09e-07,25;UBERON:0004161,1.09e-07,25;UBERON:0000305,1.23e-07,7;UBERON:0001041,2.07e-07,87;UBERON:0000166,8.52e-07,22 | |||
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| ||
|short_description=p@chr13:109828922..109828926,- | |short_description=p@chr13:109828922..109828926,- | ||
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Latest revision as of 14:26, 24 July 2015
Short description: | p@chr13:109828922..109828926, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:109828922..109828926, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.96e-11 | 253 |
acinar cell of salivary gland | 2.18e-10 | 3 |
epithelial cell of alimentary canal | 9.48e-10 | 20 |
epithelial cell of gall bladder | 2.30e-08 | 2 |
endodermal cell | 4.37e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 6.78e-15 | 4 |
respiratory system mucosa | 6.78e-15 | 4 |
biliary system | 5.57e-14 | 9 |
biliary tree | 5.57e-14 | 9 |
biliary bud | 5.57e-14 | 9 |
bile duct | 8.48e-10 | 6 |
digestive system duct | 8.48e-10 | 6 |
digestive system | 1.03e-09 | 145 |
digestive tract | 1.03e-09 | 145 |
primitive gut | 1.03e-09 | 145 |
endo-epithelium | 1.46e-09 | 82 |
endoderm-derived structure | 4.29e-09 | 160 |
endoderm | 4.29e-09 | 160 |
presumptive endoderm | 4.29e-09 | 160 |
epithelium of foregut-midgut junction | 1.09e-07 | 25 |
anatomical boundary | 1.09e-07 | 25 |
hepatobiliary system | 1.09e-07 | 25 |
foregut-midgut junction | 1.09e-07 | 25 |
septum transversum | 1.09e-07 | 25 |
amnion | 1.23e-07 | 7 |
foregut | 2.07e-07 | 87 |
oral opening | 8.52e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.14e-28 | 106 |
squamous cell carcinoma | 5.18e-24 | 14 |
cell type cancer | 1.14e-21 | 143 |
cancer | 2.26e-14 | 235 |
disease of cellular proliferation | 7.08e-14 | 239 |
disease of anatomical entity | 1.40e-08 | 39 |
non-small cell lung carcinoma | 4.32e-07 | 5 |
cervical cancer | 5.21e-07 | 5 |