FFCP PHASE1:Hg19::chr12:53204539..53204571,+: Difference between revisions
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|id=chr12:53204539..53204571,+
|short_description=p@chr12:53204539..53204571,+
|description=CAGE_peak_at_chr12:53204539..53204571,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:53204539..53204571,+ | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_at_chr12:53204539..53204571,+ | |||
|id=chr12:53204539..53204571,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.78e-26;1!UBERON:0008814;1.29e-13;2!UBERON:0010056;1.29e-13;2 | |||
|ontology_enrichment_disease=DOID:3151!4.53e-12!1;DOID:3149!4.53e-12!1;DOID:178!1.32e-11!1;DOID:326!1.32e-11!1;DOID:3978!1.32e-11!1;DOID:3394!1.32e-11!1;DOID:5844!1.32e-11!1 | |||
|ontology_enrichment_disease_v019=DOID:3151;8.64e-26;1!DOID:3149;8.64e-26;1!DOID:3451;1.29e-13;2!DOID:4159;1.29e-13;2!DOID:0060122;1.29e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,7.62e-26,1;DOID:3149,7.62e-26,1;DOID:3451,1.21e-13,2;DOID:4159,1.21e-13,2;DOID:0060122,1.21e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0003127!1.73e-21!2;UBERON:0006562!9.90e-16!11;UBERON:0001723!1.95e-15!3;UBERON:0001033!1.95e-15!3;UBERON:0010056!1.95e-15!3;UBERON:0002372!3.65e-12!1;UBERON:0001961!3.65e-12!1;UBERON:0001744!3.65e-12!1;UBERON:0001735!3.65e-12!1;UBERON:0002146!1.19e-11!1;UBERON:0005623!1.19e-11!1;UBERON:0001042!2.49e-10!10;UBERON:0009145!2.49e-10!10;UBERON:0000065!4.81e-09!53;UBERON:0000002!5.36e-08!6;UBERON:0001560!5.36e-08!6;UBERON:0000072!7.22e-08!46;UBERON:0007196!3.48e-07!14;UBERON:0001558!3.48e-07!14;UBERON:0003126!8.59e-07!7;UBERON:0001005!8.59e-07!7;UBERON:0000341!9.96e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;5.99e-34;3!UBERON:0001033;5.99e-34;3!UBERON:0002372;4.61e-26;1!UBERON:0001961;4.61e-26;1!UBERON:0001744;4.61e-26;1!UBERON:0001042;4.61e-26;1!UBERON:0001735;4.61e-26;1!UBERON:0000341;8.28e-14;2!UBERON:0006562;9.40e-14;2!UBERON:0001043;1.10e-09;3!UBERON:0000165;1.12e-08;28!UBERON:0000014;1.86e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,4.66e-34,3;UBERON:0001033,4.66e-34,3;UBERON:0010056,4.66e-34,3;UBERON:0002372,4.61e-26,1;UBERON:0001961,4.61e-26,1;UBERON:0001744,4.61e-26,1;UBERON:0001735,4.61e-26,1;UBERON:0001042,4.76e-23,10;UBERON:0009145,4.76e-23,10;UBERON:0006562,4.98e-21,11;UBERON:0000341,8.28e-14,2;UBERON:0001557,1.70e-12,19;UBERON:0000166,6.93e-11,22;UBERON:0001043,1.10e-09,3;UBERON:0009143,1.10e-09,3;UBERON:0000165,2.05e-08,29;UBERON:0000930,2.05e-08,29;UBERON:0000014,1.80e-07,4;UBERON:0000161,6.79e-07,36;UBERON:0000153,7.52e-07,62;UBERON:0007811,7.52e-07,62 | |||
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|short_description=p@chr12:53204539..53204571,+ | |||
}} | }} |
Latest revision as of 09:41, 24 July 2015
Short description: | p@chr12:53204539..53204571, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:53204539..53204571, + |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
tongue | 4.66e-34 | 3 |
gustatory system | 4.66e-34 | 3 |
future tongue | 4.66e-34 | 3 |
tonsil | 4.61e-26 | 1 |
mucosa-associated lymphoid tissue | 4.61e-26 | 1 |
lymphoid tissue | 4.61e-26 | 1 |
tonsillar ring | 4.61e-26 | 1 |
chordate pharynx | 4.76e-23 | 10 |
pharyngeal region of foregut | 4.76e-23 | 10 |
pharynx | 4.98e-21 | 11 |
throat | 8.28e-14 | 2 |
upper respiratory tract | 1.70e-12 | 19 |
oral opening | 6.93e-11 | 22 |
esophagus | 1.10e-09 | 3 |
esophageal region | 1.10e-09 | 3 |
mouth | 2.05e-08 | 29 |
stomodeum | 2.05e-08 | 29 |
zone of skin | 1.80e-07 | 4 |
orifice | 6.79e-07 | 36 |
anterior region of body | 7.52e-07 | 62 |
craniocervical region | 7.52e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 7.62e-26 | 1 |
keratoacanthoma | 7.62e-26 | 1 |
skin carcinoma | 1.21e-13 | 2 |
skin cancer | 1.21e-13 | 2 |
integumentary system cancer | 1.21e-13 | 2 |