FFCP PHASE1:Hg19::chr12:52629130..52629159,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52629130..52629159,- | |||
|coexpression_cluster_id=C689 | |||
|description=CAGE_peak_at_chr12:52629130..52629159,- | |description=CAGE_peak_at_chr12:52629130..52629159,- | ||
|id=chr12:52629130..52629159,- | |id=chr12:52629130..52629159,- | ||
|ontology_enrichment_celltype=CL:0000066!2.85e-47!254;CL:0002076!1.39e-13!43;CL:0000077!2.23e-13!19;CL:0000063!2.49e-12!578;CL:0002368!4.10e-12!13;CL:0000076!2.21e-11!62;CL:0000223!3.66e-09!59;CL:0002202!2.41e-08!9;CL:0002632!2.41e-08!9;CL:0000213!3.95e-08!57;CL:0000215!3.95e-08!57 | |ontology_enrichment_celltype=CL:0000066!2.85e-47!254;CL:0002076!1.39e-13!43;CL:0000077!2.23e-13!19;CL:0000063!2.49e-12!578;CL:0002368!4.10e-12!13;CL:0000076!2.21e-11!62;CL:0000223!3.66e-09!59;CL:0002202!2.41e-08!9;CL:0002632!2.41e-08!9;CL:0000213!3.95e-08!57;CL:0000215!3.95e-08!57 | ||
|ontology_enrichment_celltype_v019=CL:0000077;6.34e-21;19!CL:0002368;6.05e-10;13!CL:0002577;7.47e-09;3!CL:0002202;8.77e-08;9!CL:0002632;8.77e-08;9!CL:0002076;6.36e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.85e-33,253;CL:0000077,6.59e-21,19;CL:0000076,2.00e-12,63;CL:0002076,3.95e-10,42;CL:0002368,7.26e-10,13;CL:0000213,1.56e-09,58;CL:0000215,1.56e-09,58;CL:0002577,6.92e-09,3;CL:0002202,8.83e-08,9;CL:0002632,8.83e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.00e-16;29 | |||
|ontology_enrichment_disease=DOID:305!3.84e-17!106;DOID:0050687!1.89e-12!143;DOID:162!5.65e-08!235;DOID:14566!1.90e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.93e-15,106;DOID:0050687,2.53e-10,143;DOID:162,1.30e-07,235;DOID:14566,2.79e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000065!2.69e-15!53;UBERON:0008947!1.65e-14!38;UBERON:0003258!1.65e-14!38;UBERON:0001737!6.21e-12!9;UBERON:0001004!8.06e-12!72;UBERON:0000072!1.45e-11!46;UBERON:0004119!2.38e-11!169;UBERON:0000925!2.38e-11!169;UBERON:0006595!2.38e-11!169;UBERON:0001048!4.50e-11!168;UBERON:0000077!9.38e-11!130;UBERON:0005153!2.24e-09!37;UBERON:0001041!7.37e-09!98;UBERON:0005157!7.57e-09!51;UBERON:0003124!5.33e-08!7;UBERON:0001007!8.52e-08!155;UBERON:0001555!8.52e-08!155;UBERON:0007026!8.52e-08!155;UBERON:0000063!1.27e-07!97;UBERON:0001557!1.69e-07!19;UBERON:0004921!3.61e-07!129;UBERON:0004185!3.61e-07!129;UBERON:0000064!7.48e-07!219;UBERON:0005631!7.52e-07!14;UBERON:0000158!7.52e-07!14;UBERON:0000464!8.84e-07!104;UBERON:0005911!8.96e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.33e-24;9!UBERON:0001557;6.33e-24;9!UBERON:0000065;3.66e-17;44!UBERON:0000072;1.33e-15;37!UBERON:0001004;2.06e-08;65!UBERON:0001987;9.73e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.44e-25,9;UBERON:0008947,4.65e-20,38;UBERON:0003258,4.65e-20,38;UBERON:0000065,3.82e-18,54;UBERON:0000072,1.51e-15,47;UBERON:0001557,1.65e-13,19;UBERON:0001004,4.27e-13,74;UBERON:0004119,1.19e-12,160;UBERON:0000925,1.19e-12,160;UBERON:0006595,1.19e-12,160;UBERON:0005153,4.26e-10,37;UBERON:0001007,6.73e-10,145;UBERON:0001555,6.73e-10,145;UBERON:0007026,6.73e-10,145;UBERON:0001041,2.75e-09,87;UBERON:0004921,1.34e-08,118;UBERON:0001048,1.75e-08,160;UBERON:0005157,2.39e-07,47;UBERON:0001987,9.20e-07,4;UBERON:0004340,9.20e-07,4 | |||
|phase1_expression=0,0,0,0,0,1.74467704820074,0,0,0,0.737201809504527,24.423040879035,0.655324116390517,2.11013582582763,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.8072355126695,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,1.88300474649071,0,0.486634870302636,0.0945348171640679,1.99556457716308,0.966182642624386,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0,1.25849830862972,1.6507082516404,0.835979866147242,0.258416759169329,0,0,0.805658634218294,0,0,0.367663080345869,7.29127753093584,0,0,0,0,0,0,0,0,0.872188104285069,0.993943903390637,0,0,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.89694817844431,0.213557388818567,0,0,0,0,0.18611685633159,0.168776332241266,0,0.504867548488229,0.184099797284599,0.161646056818812,0,0,0.169560592310488,1.35282597214308,0,0.286804595389004,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,1.8929088006375,1.85443159085912,2.89213235860178,3.30881918197182,1.08939722046203,1.89816495288877,1.8876383142423,1.76599318612811,1.53898862778556,0,0,0,0,0,0,0,0,0,0.171567810298526,0.878002283269004,0,0,0,0,0,2.88662684050547,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358234090811393,1.74380363108377,2.68367875415648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,0,7.49797433865428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87173775377726,0.178428988797162,1.41932173530541,0,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,1.5119514666484,0,0,1.40330047216537,0,0,0.64341568457443,0,0,0,0,0,0,0,7.81975234182811,1.01289087829486,0.574072240823034,0,0,0,0.0770153371044148,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0,0,0.764628819135115,0.831076008928724,0.223874754722178,0,0,0.512900250232778,1.64007322849853,1.30151357865721,0,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0,0,0,0,0,1.32227932288782,2.11409074101617,0.765676274967505,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0,0,0.288666338176536,2.01090682660736,1.08890984861323,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,4.16568367167754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0.23874448473769,0,0,0,0,0,0,1.68900326502395,0,0,0,0,0,0,0.629078458031288,0.895105873378046,0,0,0,0,0,0,0,0,0.174919999992391,0,0,2.2882828526349,2.36387681767936,0,0,0,0,0,0,0,0,0,0.435753854075961,0,0.0769502585037971,0.113942055847001,0,0.448788222048861,0.217294743844016,0.638002319463839,0.366390373607449,3.19820865611181,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0.394584402849391,0,0,0,0,0,0,0.992975867626496,0.313932918407225,0,0,0,1.04135843001079,0,0.522355239482415,0,0,1.06431964417994,0.730893170861856,0.903270027585302,0,0,0,0,0,0,3.12882212375685,0.160317640503067,0,2.99714414373195,0.288180834308212,0,0,0.14405479798815,0,0.707082103850386,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0.798716001995964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,1.34340638123612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0.106787412567695,0,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0.150257608997218,0,0,0,0.322231671127465,0,0.398095888698616,0,0,0,0,0.192619830407303,2.14441591374926,1.82696004375648,10.8818844245891,4.39892701215285,3.67105056759701,4.83539870920016,0.926404341482917,5.48210123946768,0.176689145945881,9.64570191354574,1.52048196587765,0,0,3.03859956177382,0,0,0,0,0,2.94927490504463,2.11312123358627,0,0,0,0,0,0.559518030877778,0.622077260032973,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.15892398141218,0,0,0,0,0,0,0,1.63771917510097,1.33070477595341,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,1.18193840883968,1.11231401892069,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.17071847709395,0,0,0,0,0.423387050190929,2.7492824225286,0.31020638566432,0.955538938977433,0.894843454382338,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41095188908457,0,0,0,0,0,0.679708458751268,0,0,0,0,0,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0.23806443146374,0,0,6.50364802967558,0.318235791390825,1.61693751166575,0,0,0.0673520530145875,0.0717222053926763,0,0.651226148887796,0.533636729388577,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,1.74467704820074,0,0,0,0.737201809504527,24.423040879035,0.655324116390517,2.11013582582763,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.8072355126695,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,1.88300474649071,0,0.486634870302636,0.0945348171640679,1.99556457716308,0.966182642624386,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0,1.25849830862972,1.6507082516404,0.835979866147242,0.258416759169329,0,0,0.805658634218294,0,0,0.367663080345869,7.29127753093584,0,0,0,0,0,0,0,0,0.872188104285069,0.993943903390637,0,0,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.89694817844431,0.213557388818567,0,0,0,0,0.18611685633159,0.168776332241266,0,0.504867548488229,0.184099797284599,0.161646056818812,0,0,0.169560592310488,1.35282597214308,0,0.286804595389004,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,1.8929088006375,1.85443159085912,2.89213235860178,3.30881918197182,1.08939722046203,1.89816495288877,1.8876383142423,1.76599318612811,1.53898862778556,0,0,0,0,0,0,0,0,0,0.171567810298526,0.878002283269004,0,0,0,0,0,2.88662684050547,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358234090811393,1.74380363108377,2.68367875415648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,0,7.49797433865428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87173775377726,0.178428988797162,1.41932173530541,0,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,1.5119514666484,0,0,1.40330047216537,0,0,0.64341568457443,0,0,0,0,0,0,0,7.81975234182811,1.01289087829486,0.574072240823034,0,0,0,0.0770153371044148,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0,0,0.764628819135115,0.831076008928724,0.223874754722178,0,0,0.512900250232778,1.64007322849853,1.30151357865721,0,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0,0,0,0,0,1.32227932288782,2.11409074101617,0.765676274967505,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0,0,0.288666338176536,2.01090682660736,1.08890984861323,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,4.16568367167754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0.23874448473769,0,0,0,0,0,0,1.68900326502395,0,0,0,0,0,0,0.629078458031288,0.895105873378046,0,0,0,0,0,0,0,0,0.174919999992391,0,0,2.2882828526349,2.36387681767936,0,0,0,0,0,0,0,0,0,0.435753854075961,0,0.0769502585037971,0.113942055847001,0,0.448788222048861,0.217294743844016,0.638002319463839,0.366390373607449,3.19820865611181,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0.394584402849391,0,0,0,0,0,0,0.992975867626496,0.313932918407225,0,0,0,1.04135843001079,0,0.522355239482415,0,0,1.06431964417994,0.730893170861856,0.903270027585302,0,0,0,0,0,0,3.12882212375685,0.160317640503067,0,2.99714414373195,0.288180834308212,0,0,0.14405479798815,0,0.707082103850386,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0.798716001995964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,1.34340638123612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0.106787412567695,0,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0.150257608997218,0,0,0,0.322231671127465,0,0.398095888698616,0,0,0,0,0.192619830407303,2.14441591374926,1.82696004375648,10.8818844245891,4.39892701215285,3.67105056759701,4.83539870920016,0.926404341482917,5.48210123946768,0.176689145945881,9.64570191354574,1.52048196587765,0,0,3.03859956177382,0,0,0,0,0,2.94927490504463,2.11312123358627,0,0,0,0,0,0.559518030877778,0.622077260032973,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.15892398141218,0,0,0,0,0,0,0,1.63771917510097,1.33070477595341,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,1.18193840883968,1.11231401892069,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.17071847709395,0,0,0,0,0.423387050190929,2.7492824225286,0.31020638566432,0.955538938977433,0.894843454382338,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41095188908457,0,0,0,0,0,0.679708458751268,0,0,0,0,0,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0.23806443146374,0,0,6.50364802967558,0.318235791390825,1.61693751166575,0,0,0.0673520530145875,0.0717222053926763,0,0.651226148887796,0.533636729388577,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:52629130..52629159,- | |short_description=p@chr12:52629130..52629159,- | ||
}} | }} |
Latest revision as of 09:30, 24 July 2015
Short description: | p@chr12:52629130..52629159, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52629130..52629159, - |
Coexpression cluster: | C689_Alveolar_mesothelioma_Retinal_Mesothelial_Prostate_bile_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.85e-33 | 253 |
mesothelial cell | 6.59e-21 | 19 |
squamous epithelial cell | 2.00e-12 | 63 |
endo-epithelial cell | 3.95e-10 | 42 |
respiratory epithelial cell | 7.26e-10 | 13 |
lining cell | 1.56e-09 | 58 |
barrier cell | 1.56e-09 | 58 |
placental epithelial cell | 6.92e-09 | 3 |
epithelial cell of tracheobronchial tree | 8.83e-08 | 9 |
epithelial cell of lower respiratory tract | 8.83e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.44e-25 | 9 |
respiratory primordium | 4.65e-20 | 38 |
endoderm of foregut | 4.65e-20 | 38 |
respiratory tract | 3.82e-18 | 54 |
segment of respiratory tract | 1.51e-15 | 47 |
upper respiratory tract | 1.65e-13 | 19 |
respiratory system | 4.27e-13 | 74 |
endoderm-derived structure | 1.19e-12 | 160 |
endoderm | 1.19e-12 | 160 |
presumptive endoderm | 1.19e-12 | 160 |
epithelial bud | 4.26e-10 | 37 |
digestive system | 6.73e-10 | 145 |
digestive tract | 6.73e-10 | 145 |
primitive gut | 6.73e-10 | 145 |
foregut | 2.75e-09 | 87 |
subdivision of digestive tract | 1.34e-08 | 118 |
primordium | 1.75e-08 | 160 |
epithelial fold | 2.39e-07 | 47 |
placenta | 9.20e-07 | 4 |
allantois | 9.20e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.93e-15 | 106 |
cell type cancer | 2.53e-10 | 143 |
cancer | 1.30e-07 | 235 |
disease of cellular proliferation | 2.79e-07 | 239 |