FFCP PHASE1:Hg19::chr12:12868688..12868705,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:12868688..12868705,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_at_chr12:12868688..12868705,- | |||
|id=chr12:12868688..12868705,- | |||
|ontology_enrichment_celltype=CL:0000838!7.80e-36!52;CL:0000542!7.02e-35!53;CL:0000051!7.02e-35!53;CL:0000084!9.83e-22!25;CL:0000827!9.83e-22!25;CL:0000791!2.18e-21!18;CL:0000789!2.18e-21!18;CL:0002420!2.18e-21!18;CL:0002419!2.18e-21!18;CL:0000790!2.18e-21!18;CL:0000988!5.85e-16!182;CL:0000037!9.84e-16!172;CL:0000566!9.84e-16!172;CL:0002087!1.05e-14!119;CL:0000738!4.78e-14!140;CL:0002031!1.22e-13!124;CL:0002032!1.72e-13!165;CL:0000837!1.72e-13!165;CL:0000236!1.47e-12!14;CL:0000625!1.84e-12!11;CL:0000945!2.55e-12!24;CL:0000826!2.55e-12!24;CL:0000624!2.91e-09!6;CL:0000080!3.57e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.41e-24;18!CL:0000789;1.41e-24;18!CL:0002419;1.41e-24;18!CL:0000084;8.40e-21;25!CL:0000542;2.75e-16;53!CL:0000898;2.61e-15;3!CL:0000625;5.93e-15;11!CL:0000815;5.07e-11;2!CL:0000792;5.07e-11;2!CL:0002677;5.07e-11;2!CL:0000236;6.21e-09;13!CL:0000624;6.95e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.50e-25,52;CL:0000791,1.04e-24,18;CL:0000789,1.04e-24,18;CL:0002420,1.04e-24,18;CL:0002419,1.04e-24,18;CL:0000790,1.04e-24,18;CL:0000542,1.25e-24,53;CL:0000051,1.25e-24,53;CL:0000084,8.37e-21,25;CL:0000827,8.37e-21,25;CL:0000898,1.69e-15,3;CL:0000625,6.84e-15,11;CL:0000236,1.51e-11,14;CL:0000815,5.48e-11,2;CL:0000792,5.48e-11,2;CL:0002677,5.48e-11,2;CL:0000893,1.04e-10,2;CL:0002489,1.04e-10,2;CL:0000809,1.04e-10,2;CL:0000808,1.04e-10,2;CL:0000894,1.04e-10,2;CL:0000806,1.04e-10,2;CL:0000807,1.04e-10,2;CL:0000805,1.04e-10,2;CL:0002425,1.04e-10,2;CL:0002087,4.23e-09,115;CL:0002031,1.44e-08,120;CL:0000624,5.63e-08,6;CL:0000738,3.93e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;1.41e-24;18!CL:0000051;2.75e-16;53!CL:0002425;2.59e-10;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.19e-10!15;UBERON:0000179!1.19e-10!15;UBERON:0000463!1.19e-10!15;UBERON:0004177!4.24e-09!7;UBERON:0002370!4.15e-07!4;UBERON:0005058!4.15e-07!4;UBERON:0009113!4.15e-07!4;UBERON:0003295!4.15e-07!4;UBERON:0005562!4.15e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.32e-10;2!UBERON:0005058;1.32e-10;2!UBERON:0009113;1.32e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.12e-19,4;UBERON:0005058,1.12e-19,4;UBERON:0009113,1.12e-19,4;UBERON:0003295,1.12e-19,4;UBERON:0005562,1.12e-19,4;UBERON:0003351,3.60e-13,6;UBERON:0004177,2.65e-11,7;UBERON:0005057,2.65e-11,7;UBERON:0000974,6.19e-08,10;UBERON:0003408,6.19e-08,10;UBERON:0001042,6.19e-08,10;UBERON:0009145,6.19e-08,10;UBERON:0006562,3.23e-07,11;UBERON:0009722,3.23e-07,11;UBERON:0007690,3.23e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0.0821005894499457,0.157421562627358,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0.553995408531877,0,0,0,0.647787332037959,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,3.55803701545422,0.426730222566507,1.20118796110804,0.574752439954483,0.661044872784862,1.90810750907073,1.1384259382189,0.587237189370939,0,0,0.560508562981536,0.526768169550154,0.590129310341499,0.786021525498329,0.822405995998037,5.85152733867373,2.28145586643513,1.89379122293893,1.94826728407911,6.68462741311041,3.24066498222321,3.1014745241707,4.60366568400527,3.45846563259323,4.1618991219161,4.27538551969558,3.31620021343018,4.63684937176084,1.03800594213442,2.67540828089713,1.04535523804977,6.79856056185397,1.91610246800961,1.03088233644789,3.79529538029254,1.27426165729639,0.651083453856419,0,0.752875595388864,1.15187950038977,1.24930726552346,1.18388626022008,3.28451198768419,1.20964045934839,0.802320587350522,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0.238490624305342,0,0,0,0,0,0.56530794192401,0,0.275118041940067,0.208994966536811,0,0,0.33472061276467,0,0,0.24406205754817,0.367663080345869,1.62028389576352,0.892997282840798,0.673588117878509,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.968532774145487,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,1.90544744788996,0.591092280605782,1.07813787429759,0.77005821767849,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0.165018999841176,0,0,0,0,0,0.307007349452259,0,0.322260734604821,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,1.52927441428475,0.569647187174163,0.476463550915578,2.05681136543097,0,0,0.79312517629427,0.213648142254946,0,0,0,0.144269212976445,0.924843963529383,0.159426272728822,0.798317485731266,0,0,0,0.842391534340376,0.456469358066384,0,0,0.169291777801603,0.321176150207399,0.201799707191048,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0.276283915531148,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0.627921025580099,0,0,0,0,0,0.158936578980379,0,0,0,0,0.995261931078505,0.0884575645033392,0,0.296521128680622,0.494255755786011,0.208843899010911,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176512253383001,0,0,0,0,0,0,0,0,0,0.343609788497747,0.343189995723929,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0.223171457441873,0.134366944973453,0,0,0,0,0.13480708770837,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.592834895693833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398594520940089,0,0,0,0,0.59996218756479,0,0.861074898304078,0,0,0,0,0,0.107824811396682,0,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03710588800201,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0.281951753939561,0.0644578879735772,0.0999411559249289,0,0,0.0802413666891683,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,1.67931165573616,2.04846557176331,0,0,0,0,0,0.740872583160463,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr12:12868688..12868705,- | |||
}} |
Latest revision as of 06:38, 24 July 2015
Short description: | p@chr12:12868688..12868705, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:12868688..12868705, - |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.50e-25 | 52 |
mature alpha-beta T cell | 1.04e-24 | 18 |
alpha-beta T cell | 1.04e-24 | 18 |
immature T cell | 1.04e-24 | 18 |
mature T cell | 1.04e-24 | 18 |
immature alpha-beta T cell | 1.04e-24 | 18 |
lymphocyte | 1.25e-24 | 53 |
common lymphoid progenitor | 1.25e-24 | 53 |
T cell | 8.37e-21 | 25 |
pro-T cell | 8.37e-21 | 25 |
naive T cell | 1.69e-15 | 3 |
CD8-positive, alpha-beta T cell | 6.84e-15 | 11 |
B cell | 1.51e-11 | 14 |
regulatory T cell | 5.48e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.48e-11 | 2 |
naive regulatory T cell | 5.48e-11 | 2 |
thymocyte | 1.04e-10 | 2 |
double negative thymocyte | 1.04e-10 | 2 |
double-positive, alpha-beta thymocyte | 1.04e-10 | 2 |
DN4 thymocyte | 1.04e-10 | 2 |
DN1 thymic pro-T cell | 1.04e-10 | 2 |
DN2 thymocyte | 1.04e-10 | 2 |
DN3 thymocyte | 1.04e-10 | 2 |
immature single positive thymocyte | 1.04e-10 | 2 |
early T lineage precursor | 1.04e-10 | 2 |
nongranular leukocyte | 4.23e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 1.44e-08 | 120 |
CD4-positive, alpha-beta T cell | 5.63e-08 | 6 |
leukocyte | 3.93e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.12e-19 | 4 |
hemolymphoid system gland | 1.12e-19 | 4 |
thymic region | 1.12e-19 | 4 |
pharyngeal gland | 1.12e-19 | 4 |
thymus primordium | 1.12e-19 | 4 |
pharyngeal epithelium | 3.60e-13 | 6 |
hemopoietic organ | 2.65e-11 | 7 |
immune organ | 2.65e-11 | 7 |
neck | 6.19e-08 | 10 |
gland of gut | 6.19e-08 | 10 |
chordate pharynx | 6.19e-08 | 10 |
pharyngeal region of foregut | 6.19e-08 | 10 |
pharynx | 3.23e-07 | 11 |
entire pharyngeal arch endoderm | 3.23e-07 | 11 |
early pharyngeal endoderm | 3.23e-07 | 11 |