FFCP PHASE1:Hg19::chr11:2016522..2016560,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=183bp_to_BC106079_5end | |association_with_transcript=183bp_to_BC106079_5end | ||
|cluster_id=chr11:2016522..2016560,- | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_1_at_BC106079_5end | |description=CAGE_peak_1_at_BC106079_5end | ||
|id=chr11:2016522..2016560,- | |id=chr11:2016522..2016560,- | ||
|ontology_enrichment_celltype=CL:0000188!3.32e-07!9 | |ontology_enrichment_celltype=CL:0000188!3.32e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000349;5.64e-17;19!CL:0002577;1.61e-07;3!CL:0002541;2.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.03e-17,19;CL:0002577,1.62e-07,3;CL:0002541,2.50e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.94e-13!14;UBERON:0000158!1.94e-13!14;UBERON:0000478!1.07e-11!24;UBERON:0001737!1.79e-11!9;UBERON:0001557!1.55e-10!19;UBERON:0003124!4.70e-10!7;UBERON:0004923!9.13e-10!57;UBERON:0003104!9.07e-09!238;UBERON:0009142!9.07e-09!238;UBERON:0000481!1.32e-07!347;UBERON:0004119!1.84e-07!169;UBERON:0000925!1.84e-07!169;UBERON:0006595!1.84e-07!169;UBERON:0000064!2.35e-07!219;UBERON:0000077!3.12e-07!130;UBERON:0004921!7.97e-07!129;UBERON:0004185!7.97e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;4.43e-17;24!UBERON:0001737;6.27e-17;9!UBERON:0001557;6.27e-17;9!UBERON:0005631;1.98e-13;10!UBERON:0000158;1.98e-13;10!UBERON:0001134;1.54e-10;16!UBERON:0002036;1.54e-10;16!UBERON:0001987;3.58e-09;4!UBERON:0000305;4.34e-08;7!UBERON:0003124;2.37e-07;3!UBERON:0000920;2.37e-07;3!UBERON:0001723;3.56e-07;3!UBERON:0001033;3.56e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.17e-20,14;UBERON:0000158,1.17e-20,14;UBERON:0000478,4.99e-17,24;UBERON:0001737,5.31e-17,9;UBERON:0003124,8.64e-15,7;UBERON:0001557,5.63e-13,19;UBERON:0001987,3.93e-09,4;UBERON:0004340,3.93e-09,4;UBERON:0000305,4.35e-08,7;UBERON:0000920,2.50e-07,3;UBERON:0001723,4.07e-07,3;UBERON:0001033,4.07e-07,3;UBERON:0010056,4.07e-07,3;UBERON:0004119,5.41e-07,160;UBERON:0000925,5.41e-07,160;UBERON:0006595,5.41e-07,160;UBERON:0004871,5.41e-07,8;UBERON:0004923,7.50e-07,66;UBERON:0000072,7.94e-07,47 | |||
|phase1_expression=4.72363786103447,0.214100523890983,0.986680828671798,1.0007329835313,1.78784437770915,13.0850778615055,0,0,0,2.94880723801811,1.39560233594486,22.4994613294077,21.3651252365047,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39334510984468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,2.3858578411533,1.45990461090791,0,0,0.087834785693126,0.130979075497713,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,2.24271040056923,0,0,1.8672662123986,0,0,1.21085942115945,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.69716365721711,0,0,0,0,0,0,0,0,3.90412440131485,6.23763353288976,5.78426471720357,4.30146493656336,4.57546832594053,6.16903609688851,4.85392709376592,4.51309369788296,8.84918460976698,0.738155454624648,1.40241773803446,2.8810180793198,11.7606969108434,0,0,0,0,0,0,0,0,0,2.03694579348765,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428933980974443,30.3868099019208,0.823240336780769,0,0,3.16780749173372,0,0,0,0,0,0,0,0,0,2.31650090668127,4.10952645100767,5.55088986043676,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.858840442033979,1.50051156317903,0,0,0,0,0,1.80567659836631,0,1.03473071292505,0,0,0,17.0347006992584,28.8240476001119,0,0,0,34.2534155734273,33.2870879020994,19.9577593597589,9.42809669711352,1.07423381301644,1.96462066103151,2.56278298511402,1.02341449813341,0.321707842287215,7.42090332224955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,3.08454505380579,0,1.50506932156456,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0.773365746336976,2.31072925671967,3.22357716924872,2.75673144969061,0.966782203814463,0.725083469571143,0.767039646744908,3.82837753280971,0,0,0,0,0,0,0,0,0,0,0,0,1.48863347743867,1.58189712359363,0.190630193923825,0,2.56763392820352,0,0,0,0.274537029736055,0,0,0,0,2.43816869544795,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.491245205065606,0,0,0,0,2.27683904259429,0.349934720244983,0,0,0,0.847294206991012,0,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,125.818343456763,37.7145144657451,93.3768534381665,0,0,0,0,1.05562704063997,0.597743964753209,0,5.79445320064835,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0.455173793141999,0,1.41832609060762,1.03423011972439,0,0,0,0,0,0,0,0,0,0,0.538651809526579,0,0,6.28303510868405,9.23502661337069,46.8931704805922,4.30508688988753,78.8891468507579,0,0,0,0.225595660617181,0,0.167821586975843,0,0,0,0,0,0,0,0.176915129006678,1.83309043480088,0,0,0,0,56.1804353109152,0,0,0.19566461893209,0,0,6.04953580243319,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0.0967563312890851,0.0730893170861856,0,0.0969890164884194,0,2.71176888936639,0,0,0,1.17330829640882,0,0,54.7478330255037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11712960508902,0.458320848023367,0,0,0.858452096273142,0.223171457441873,1.5452198671947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.786818822024972,0,0,0,2.1440859791201,1.32418394073086,0,0,0,0,0,0,0.170388021785422,0,0,18.550964447711,0.129282956361551,0,0,0,0.106787412567695,0.628817220398664,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.6016381151261,1.37358282073117,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0.168942440653073,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,4.52864207866064,0,1.31051565830417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,1.65157612686837,0.366857197043358,15.711490596446,0,0,0,0.451261970095544,0,0,23.0477891143652,0,0.887136517302272,0,0,0,0,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,4.25771376780666,0,2.7438081509987,0,0,0,0,0,0,4.48435461302062,7.30526976407596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8328549483524,0,0,0,0,0,7.12171720906684,0.513314034281235,25.5159174894404,12.1427748264785,0,0,0,0,0,0,0,1.09279780251979,0,0.245148321753905,0,0,0,3.3812458206672,0,0,0.515663103788617,0,0.71421575442263,0,0,2.92134555298607,0,0,0.788857810965923,0,0,4.7612415646386,0,0,4.32626562123789,0.126166424835079,0.98339014767326,0,0,0,0,0,0.0757786982182394,0.535928260312357,0,0,1.70587185520785,4.76128862927481,0,0.248298857183432,0,0,4.24446096812261,4.13661821004227,36.2767299150398,0.336760265072938,0.0717222053926763,4.9899053481902,0.162806537221949,0,0,0,11.7320471201727,0.366724332548599,3.25516942652591,0,0,0 | |phase1_expression=4.72363786103447,0.214100523890983,0.986680828671798,1.0007329835313,1.78784437770915,13.0850778615055,0,0,0,2.94880723801811,1.39560233594486,22.4994613294077,21.3651252365047,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39334510984468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,2.3858578411533,1.45990461090791,0,0,0.087834785693126,0.130979075497713,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,2.24271040056923,0,0,1.8672662123986,0,0,1.21085942115945,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.69716365721711,0,0,0,0,0,0,0,0,3.90412440131485,6.23763353288976,5.78426471720357,4.30146493656336,4.57546832594053,6.16903609688851,4.85392709376592,4.51309369788296,8.84918460976698,0.738155454624648,1.40241773803446,2.8810180793198,11.7606969108434,0,0,0,0,0,0,0,0,0,2.03694579348765,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428933980974443,30.3868099019208,0.823240336780769,0,0,3.16780749173372,0,0,0,0,0,0,0,0,0,2.31650090668127,4.10952645100767,5.55088986043676,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.858840442033979,1.50051156317903,0,0,0,0,0,1.80567659836631,0,1.03473071292505,0,0,0,17.0347006992584,28.8240476001119,0,0,0,34.2534155734273,33.2870879020994,19.9577593597589,9.42809669711352,1.07423381301644,1.96462066103151,2.56278298511402,1.02341449813341,0.321707842287215,7.42090332224955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,3.08454505380579,0,1.50506932156456,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0.773365746336976,2.31072925671967,3.22357716924872,2.75673144969061,0.966782203814463,0.725083469571143,0.767039646744908,3.82837753280971,0,0,0,0,0,0,0,0,0,0,0,0,1.48863347743867,1.58189712359363,0.190630193923825,0,2.56763392820352,0,0,0,0.274537029736055,0,0,0,0,2.43816869544795,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.491245205065606,0,0,0,0,2.27683904259429,0.349934720244983,0,0,0,0.847294206991012,0,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,125.818343456763,37.7145144657451,93.3768534381665,0,0,0,0,1.05562704063997,0.597743964753209,0,5.79445320064835,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0.455173793141999,0,1.41832609060762,1.03423011972439,0,0,0,0,0,0,0,0,0,0,0.538651809526579,0,0,6.28303510868405,9.23502661337069,46.8931704805922,4.30508688988753,78.8891468507579,0,0,0,0.225595660617181,0,0.167821586975843,0,0,0,0,0,0,0,0.176915129006678,1.83309043480088,0,0,0,0,56.1804353109152,0,0,0.19566461893209,0,0,6.04953580243319,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0.0967563312890851,0.0730893170861856,0,0.0969890164884194,0,2.71176888936639,0,0,0,1.17330829640882,0,0,54.7478330255037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11712960508902,0.458320848023367,0,0,0.858452096273142,0.223171457441873,1.5452198671947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.786818822024972,0,0,0,2.1440859791201,1.32418394073086,0,0,0,0,0,0,0.170388021785422,0,0,18.550964447711,0.129282956361551,0,0,0,0.106787412567695,0.628817220398664,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.6016381151261,1.37358282073117,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0.168942440653073,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,4.52864207866064,0,1.31051565830417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,1.65157612686837,0.366857197043358,15.711490596446,0,0,0,0.451261970095544,0,0,23.0477891143652,0,0.887136517302272,0,0,0,0,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,4.25771376780666,0,2.7438081509987,0,0,0,0,0,0,4.48435461302062,7.30526976407596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8328549483524,0,0,0,0,0,7.12171720906684,0.513314034281235,25.5159174894404,12.1427748264785,0,0,0,0,0,0,0,1.09279780251979,0,0.245148321753905,0,0,0,3.3812458206672,0,0,0.515663103788617,0,0.71421575442263,0,0,2.92134555298607,0,0,0.788857810965923,0,0,4.7612415646386,0,0,4.32626562123789,0.126166424835079,0.98339014767326,0,0,0,0,0,0.0757786982182394,0.535928260312357,0,0,1.70587185520785,4.76128862927481,0,0.248298857183432,0,0,4.24446096812261,4.13661821004227,36.2767299150398,0.336760265072938,0.0717222053926763,4.9899053481902,0.162806537221949,0,0,0,11.7320471201727,0.366724332548599,3.25516942652591,0,0,0 | ||
|short_description=p1@BC106079 | |short_description=p1@BC106079 | ||
}} | }} |
Latest revision as of 20:53, 23 July 2015
Short description: | p1@BC106079 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC106079_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | 183bp_to_BC106079_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.03e-17 | 19 |
placental epithelial cell | 1.62e-07 | 3 |
chorionic membrane mesenchymal stem cell | 2.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.17e-20 | 14 |
membranous layer | 1.17e-20 | 14 |
extraembryonic structure | 4.99e-17 | 24 |
larynx | 5.31e-17 | 9 |
chorion | 8.64e-15 | 7 |
upper respiratory tract | 5.63e-13 | 19 |
placenta | 3.93e-09 | 4 |
allantois | 3.93e-09 | 4 |
amnion | 4.35e-08 | 7 |
egg chorion | 2.50e-07 | 3 |
tongue | 4.07e-07 | 3 |
gustatory system | 4.07e-07 | 3 |
future tongue | 4.07e-07 | 3 |
endoderm-derived structure | 5.41e-07 | 160 |
endoderm | 5.41e-07 | 160 |
presumptive endoderm | 5.41e-07 | 160 |
somatic layer of lateral plate mesoderm | 5.41e-07 | 8 |
organ component layer | 7.50e-07 | 66 |
segment of respiratory tract | 7.94e-07 | 47 |