FFCP PHASE1:Hg19::chr11:1977212..1977224,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:1977212..1977224,+ | |||
|coexpression_cluster_id=C3130 | |||
|description=CAGE_peak_at_chr11:1977212..1977224,+ | |description=CAGE_peak_at_chr11:1977212..1977224,+ | ||
|id=chr11:1977212..1977224,+ | |id=chr11:1977212..1977224,+ | ||
|ontology_enrichment_celltype=CL:0000349!2.59e-20!3;CL:0002577!2.59e-20!3;CL:0002541!3.12e-19!3;CL:0002536!1.44e-13!2;CL:0002537!1.28e-12!5 | |ontology_enrichment_celltype=CL:0000349!2.59e-20!3;CL:0002577!2.59e-20!3;CL:0002541!3.12e-19!3;CL:0002536!1.44e-13!2;CL:0002537!1.28e-12!5 | ||
|ontology_enrichment_celltype_v019=CL:0002577;5.76e-38;3!CL:0000349;7.90e-32;19!CL:0002537;1.51e-23;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,5.08e-38,3;CL:0000349,7.55e-32,19;CL:0002537,1.51e-23,5 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.33e-13;1!UBERON:0007297;2.25e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.39e-63!14;UBERON:0000158!2.39e-63!14;UBERON:0003124!2.00e-43!7;UBERON:0000478!2.18e-42!24;UBERON:0001987!5.50e-26!4;UBERON:0004340!5.50e-26!4;UBERON:0000305!3.84e-23!7;UBERON:0004871!3.13e-20!8;UBERON:0000476!3.12e-19!3;UBERON:0000920!3.12e-19!3;UBERON:0004923!7.83e-14!57;UBERON:0002426!5.96e-08!1;UBERON:0003831!5.96e-08!1;UBERON:0003898!5.96e-08!1;UBERON:0004830!5.96e-08!1;UBERON:0001774!5.96e-08!1;UBERON:0003830!5.96e-08!1;UBERON:0005175!5.96e-08!1;UBERON:0003897!5.96e-08!1;UBERON:0001103!5.96e-08!1;UBERON:0010084!5.96e-08!1;UBERON:0001301!1.01e-07!1;UBERON:0007029!1.07e-07!1;UBERON:0005795!4.69e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.44e-32;24!UBERON:0001987;1.13e-28;4!UBERON:0005631;1.47e-20;10!UBERON:0000158;1.47e-20;10!UBERON:0000305;5.16e-17;7!UBERON:0002426;5.49e-14;1!UBERON:0003831;5.49e-14;1!UBERON:0003898;5.49e-14;1!UBERON:0004830;5.49e-14;1!UBERON:0003830;5.49e-14;1!UBERON:0005175;5.49e-14;1!UBERON:0001774;5.49e-14;1!UBERON:0001103;5.49e-14;1!UBERON:0007029;1.83e-13;1!UBERON:0001301;1.83e-13;1!UBERON:0005090;1.24e-07;2!UBERON:0001630;1.24e-07;2!UBERON:0003127;1.54e-07;2!UBERON:0000341;1.70e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.32e-43,14;UBERON:0000158,2.32e-43,14;UBERON:0000478,1.41e-32,24;UBERON:0003124,8.45e-29,7;UBERON:0001987,1.03e-28,4;UBERON:0004340,1.03e-28,4;UBERON:0000305,5.16e-17,7;UBERON:0004871,5.76e-15,8;UBERON:0002426,5.85e-14,1;UBERON:0003831,5.85e-14,1;UBERON:0003898,5.85e-14,1;UBERON:0004830,5.85e-14,1;UBERON:0003830,5.85e-14,1;UBERON:0005175,5.85e-14,1;UBERON:0001774,5.85e-14,1;UBERON:0001103,5.85e-14,1;UBERON:0010084,5.85e-14,1;UBERON:0001301,1.61e-13,1;UBERON:0007029,1.83e-13,1;UBERON:0004923,8.86e-09,66;UBERON:0004175,3.23e-08,25;UBERON:0005090,1.28e-07,2;UBERON:0001630,1.28e-07,2;UBERON:0003127,1.54e-07,2;UBERON:0000341,1.75e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,10.9125925720653,9.98612637062982,4.23346410661552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,11.6984797521468,11.5816225524729,19.9654456364501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.01802551410223,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4335094148843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92199335066233,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.1551752147932,1.45713297917742,0,0.596852325484105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04709533488359,0,0,0,0,0.202117188958219,0,2.39563310759697,0,0,5.65522606128223,0,0,0,0,2.34640942403454,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,10.9125925720653,9.98612637062982,4.23346410661552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,11.6984797521468,11.5816225524729,19.9654456364501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.01802551410223,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4335094148843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92199335066233,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.1551752147932,1.45713297917742,0,0.596852325484105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04709533488359,0,0,0,0,0.202117188958219,0,2.39563310759697,0,0,5.65522606128223,0,0,0,0,2.34640942403454,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p@chr11:1977212..1977224,+ | |short_description=p@chr11:1977212..1977224,+ | ||
}} | }} |
Latest revision as of 20:51, 23 July 2015
Short description: | p@chr11:1977212..1977224, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:1977212..1977224, + |
Coexpression cluster: | C3130_amniotic_skeletal_Placental_diaphragm_chorionic_throat_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 5.08e-38 | 3 |
extraembryonic cell | 7.55e-32 | 19 |
amnion mesenchymal stem cell | 1.51e-23 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.32e-43 | 14 |
membranous layer | 2.32e-43 | 14 |
extraembryonic structure | 1.41e-32 | 24 |
chorion | 8.45e-29 | 7 |
placenta | 1.03e-28 | 4 |
allantois | 1.03e-28 | 4 |
amnion | 5.16e-17 | 7 |
somatic layer of lateral plate mesoderm | 5.76e-15 | 8 |
chest muscle | 5.85e-14 | 1 |
respiratory system muscle | 5.85e-14 | 1 |
skeletal muscle of trunk | 5.85e-14 | 1 |
respiratory system skeletal muscle | 5.85e-14 | 1 |
thoracic segment muscle | 5.85e-14 | 1 |
chest organ | 5.85e-14 | 1 |
muscle of trunk | 5.85e-14 | 1 |
diaphragm | 5.85e-14 | 1 |
future diaphragm | 5.85e-14 | 1 |
epididymis | 1.61e-13 | 1 |
surface | 1.83e-13 | 1 |
organ component layer | 8.86e-09 | 66 |
internal genitalia | 3.23e-08 | 25 |
muscle structure | 1.28e-07 | 2 |
muscle organ | 1.28e-07 | 2 |
open tracheal system trachea | 1.54e-07 | 2 |
throat | 1.75e-07 | 2 |