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{{UBERON
{{UBERON
|id=UBERON:0004381
|alt_id=
|name=skeleton of limb
|namespace=
|def="The collection of all skeletal elements in an individual limb." [UBERON:cjm]
|xref=EHDAA2:0002221
|is_a=UBERON:0010712
|synonym="limb skeleton" EXACT [EHDAA2:0002221];;"set of bones of limb" EXACT []
|comment=Note that EHDAA2 considers hip and shoulder joints part of limb skeleton
|comment=Note that EHDAA2 considers hip and shoulder joints part of limb skeleton
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The collection of all skeletal elements in an individual limb." [UBERON:cjm]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0003081
|develops_from=UBERON:0003081
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004381
|is_a=UBERON:0010712 ;;UBERON:0011582
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002091;;UBERON:0002101
|name=skeleton of limb
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002101
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="limb skeleton" EXACT [EHDAA2:0002221];;"set of bones of limb" EXACT []
|union_of=
|xref=EHDAA2:0002221
}}
}}

Latest revision as of 17:45, 12 September 2014

Name:skeleton of limb
Namespace:FANTOM
Definition:"The collection of all skeletal elements in an individual limb." [UBERON:cjm]
Xrefs:
links:
EHDAA2:0002221
Synonyms: "limb skeleton" EXACT [EHDAA2:0002221]
"set of bones of limb" EXACT []
Comments:Note that EHDAA2 considers hip and shoulder joints part of limb skeleton

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010712(limb skeleton subdivision),UBERON:0011582(paired limb/fin skeleton)
develops_from:UBERON:0003081(lateral plate mesoderm)
part_of:UBERON:0002101(limb)



Children

is a:UBERON:0001441 (hindlimb skeleton)
part of:UBERON:0002428 (limb bone),UBERON:0015061 (limb endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004381 (skeleton of limb), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_3f999c0063dcc9a55e99e868a06fbe10p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_3f999c0063dcc9a55e99e868a06fbe10p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_9b9fb2d66ea6b3c47f3295e7f9b01f94p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_9b9fb2d66ea6b3c47f3295e7f9b01f94p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_9b9fb2d66ea6b3c47f3295e7f9b01f94p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_9b9fb2d66ea6b3c47f3295e7f9b01f94p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_9b9fb2d66ea6b3c47f3295e7f9b01f94p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_9b9fb2d66ea6b3c47f3295e7f9b01f94p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_4a0d3691f6630e7f86b4590bf25ae81ap@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_4a0d3691f6630e7f86b4590bf25ae81ap@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_1b10b3dd1fc7856f31f3e0144e69e918p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_1b10b3dd1fc7856f31f3e0144e69e918p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_934b01d1e4fc84db2b163f93f845851ap@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_934b01d1e4fc84db2b163f93f845851ap@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_934b01d1e4fc84db2b163f93f845851ap@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_934b01d1e4fc84db2b163f93f845851ap@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_934b01d1e4fc84db2b163f93f845851ap@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_934b01d1e4fc84db2b163f93f845851ap@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_934b01d1e4fc84db2b163f93f845851ap@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_934b01d1e4fc84db2b163f93f845851ap@chr16:24096441..24096449, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_ff782d5060f684f4a3f9ab4a925ddc71p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_ff782d5060f684f4a3f9ab4a925ddc71p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_3c54bc6984e1572c15886ec744d5c595p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_3c54bc6984e1572c15886ec744d5c595p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_b298a42fffe1345e477e3a2a576946eap3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_b298a42fffe1345e477e3a2a576946eap3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_88c5d107ea0d8a43678a99b1b4134ddfp@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_88c5d107ea0d8a43678a99b1b4134ddfp@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_77ca8c935b74a16b4f1f36e389d79e9ep5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_77ca8c935b74a16b4f1f36e389d79e9ep5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_ec713f9c90ab6382c1bcf0b8c0c97436p2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_ec713f9c90ab6382c1bcf0b8c0c97436p2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_8738dfa2c4575b01e735a6894dcbeabep3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_8738dfa2c4575b01e735a6894dcbeabep3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_debc036e6c56c094ce63eb9e258d613cp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_debc036e6c56c094ce63eb9e258d613cp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_debc036e6c56c094ce63eb9e258d613cp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_debc036e6c56c094ce63eb9e258d613cp2@Oscar
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_b5b4ac9aafd4656e1fc2f3e656c9bf7bp4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_b5b4ac9aafd4656e1fc2f3e656c9bf7bp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_b5b4ac9aafd4656e1fc2f3e656c9bf7bp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_b5b4ac9aafd4656e1fc2f3e656c9bf7bp4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_7cee15c65a9754709a9d2aadff184e81p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_7cee15c65a9754709a9d2aadff184e81p6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_aab1796c3179d0edecc2cb657c6a40c8p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_aab1796c3179d0edecc2cb657c6a40c8p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_aab1796c3179d0edecc2cb657c6a40c8p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_aab1796c3179d0edecc2cb657c6a40c8p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_519254919afdd469c5e327b5a5a2c9cbp@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_519254919afdd469c5e327b5a5a2c9cbp@chr2:32482387..32482399, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_fb686f936bb0a352717f2d70e114230ep@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_fb686f936bb0a352717f2d70e114230ep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_fb686f936bb0a352717f2d70e114230ep@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_fb686f936bb0a352717f2d70e114230ep@chr12:70396969..70396979, +
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_83974f359af8fc3a0dc2825e93dc5c36p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_83974f359af8fc3a0dc2825e93dc5c36p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_a55833d843dd20707d7c31bd0b16df7bp2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_a55833d843dd20707d7c31bd0b16df7bp2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_f99fab494edbabd04a99558bc8f242e4p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_f99fab494edbabd04a99558bc8f242e4p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_8e9c6b21c694a0b52f81ff6e35e45772p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_8e9c6b21c694a0b52f81ff6e35e45772p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_35922d8ac24949b1f1e958af280b8753p1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_35922d8ac24949b1f1e958af280b8753p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_35922d8ac24949b1f1e958af280b8753p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_35922d8ac24949b1f1e958af280b8753p@chr11:67056544..67056589, -
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_08b91bd68d5ebae6cc6be9f68329b4a4p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_08b91bd68d5ebae6cc6be9f68329b4a4p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_08b91bd68d5ebae6cc6be9f68329b4a4p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_08b91bd68d5ebae6cc6be9f68329b4a4p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_6a3552d70d2f31fa7ea6edf30e8feda6p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_6a3552d70d2f31fa7ea6edf30e8feda6p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_5e4be862d6fa8aeae0f465f045f8c12ep@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_5e4be862d6fa8aeae0f465f045f8c12ep@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_81a3b34a960674fc60ba0aec30a85b8fp@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_81a3b34a960674fc60ba0aec30a85b8fp@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_76564835119024ad703d650835af2406p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_76564835119024ad703d650835af2406p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_4269d8f50931406daeb196edd7545be4p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_4269d8f50931406daeb196edd7545be4p6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_388a07b97908d7604a95554c49fd0926p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_388a07b97908d7604a95554c49fd0926p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_8eca5de236429c5e1f4d47e2931da66ap@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_8eca5de236429c5e1f4d47e2931da66ap@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_8eca5de236429c5e1f4d47e2931da66ap@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_8eca5de236429c5e1f4d47e2931da66ap@chr7:133600635..133600663, +
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_ce4b0159c757e26e3c0e3816847bfd72p4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_ce4b0159c757e26e3c0e3816847bfd72p4@Sgca
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_df58abdc473730abdf3990bd823f6f14p1@Mepe
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_df58abdc473730abdf3990bd823f6f14p1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_f3b0eaac523ac3e4eb2e7fd48edb1367p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_f3b0eaac523ac3e4eb2e7fd48edb1367p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_f3b0eaac523ac3e4eb2e7fd48edb1367p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_f3b0eaac523ac3e4eb2e7fd48edb1367p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_3f9c257f70a866ce827570c2fe58f52bp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_3f9c257f70a866ce827570c2fe58f52bp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_3f9c257f70a866ce827570c2fe58f52bp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_3f9c257f70a866ce827570c2fe58f52bp@chr15:97806574..97806585, -
1.36e-25FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_09e6e29e3452da421128dd534073caedp2@Siglec15
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_09e6e29e3452da421128dd534073caedp@chr2:180890942..180890956, -

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