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{{UBERON
{{UBERON
|id=UBERON:0003296
|alt_id=
|name=gland of diencephalon
|namespace=
|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
|xref=EHDAA:4475;;EHDAA2:0000395;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653
|is_a=UBERON:0002530;;UBERON:0004121
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003296
|is_a=UBERON:0002530 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=gland of diencephalon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001894
|part_of=UBERON:0001894
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA2:0000395;;EHDAA:4475;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:gland of diencephalon
Namespace:FANTOM
Definition:"A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0000395
EHDAA:4475
EMAPA:16646
EMAPA:16897

VHOG:0000653
Synonyms: "between brain gland" EXACT [OBOL:automatic]
"diencephalon gland" EXACT [OBOL:automatic]
"gland of between brain" EXACT [OBOL:automatic]
"gland of interbrain" EXACT [OBOL:automatic]
"gland of mature diencephalon" EXACT [OBOL:automatic]
"interbrain gland" EXACT [OBOL:automatic]
"mature diencephalon gland" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001894(diencephalon)



Children

is a:UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85afp@chr19:7979708..7979734, +
2.57e-195FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85afp@chr19:7979708..7979734, +
1.0e-156FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aeep11@SPOCK1
1.0e-156FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aeep11@SPOCK1
1.5e-156FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262cep@chr12:128210626..128210641, -
1.5e-156FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262cep@chr12:128210626..128210641, -
6.94e-147FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbep@chr19:49519930..49519937, -
6.94e-147FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979644..7979653, +
6.94e-147FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbep@chr19:49519930..49519937, -
6.94e-147FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979644..7979653, +
6.94e-147FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbep1@LHB
6.94e-147FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbep1@LHB
6.94e-147FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979677..7979703, +
6.94e-147FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979677..7979703, +
2.79e-131FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11p@chr1:99693441..99693485, -
2.79e-131FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11p@chr1:99693441..99693485, -
1.07e-130FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51p5@ENST00000513329
1.07e-130FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51p5@ENST00000513329
1.0e-112FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5p3@ENST00000443800
1.0e-112FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5p3@ENST00000443800
1.76e-111FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbcap2@LHX3
1.76e-111FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbcap2@LHX3
8.91e-111FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88bp@chr22:47126639..47126654, +
8.91e-111FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88bp@chr22:47126639..47126654, +
2.76e-110FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93p@chr11:75194071..75194110, -
2.76e-110FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93p17@LRRC49
2.76e-110FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93p17@LRRC49
2.76e-110FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93p@chr4:1233005..1233017, +
2.76e-110FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93p@chr11:75194071..75194110, -
2.76e-110FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93p@chr4:1233005..1233017, +
5.02e-99FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74p@chr12:128210666..128210685, -
5.02e-99FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74p@chr12:128210666..128210685, -
1.38e-98FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88p@chr9:139095116..139095139, +
1.38e-98FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88p@chr9:139095116..139095139, +
1.55e-98FFCP PHASE1:Hg19::chr11:70178863..70178874,+#_86c8842de92bb34e78ab840208c7dc62p@chr11:70178863..70178874, +
1.55e-98FFCP PHASE1:Hg19::chr1:57914399..57914402,+#_86c8842de92bb34e78ab840208c7dc62p@chr1:57914399..57914402, +
1.55e-98FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:9202487..9202498, -
1.55e-98FFCP PHASE2:Hg19::chr5:7338484..7338504,-#_86c8842de92bb34e78ab840208c7dc62p@chr5:7338484..7338504, -
1.55e-98FFCP PHASE2:Hg19::chr3:54952462..54952471,-#_86c8842de92bb34e78ab840208c7dc62p@chr3:54952462..54952471, -
1.55e-98FFCP PHASE2:Hg19::chr2:17185712..17185735,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:17185712..17185735, +
1.55e-98FFCP PHASE2:Hg19::chr8:135473472..135473477,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135473472..135473477, -
1.55e-98FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_86c8842de92bb34e78ab840208c7dc62p@chr15:47662877..47662880, -
1.55e-98FFCP PHASE1:Hg19::chr8:135520309..135520324,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135520309..135520324, -
1.55e-98FFCP PHASE1:Hg19::chr7:32468385..32468392,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:32468385..32468392, -
1.55e-98FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:55422565..55422604, +
1.55e-98FFCP PHASE1:Hg19::chr2:17064630..17064651,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:17064630..17064651, +
1.55e-98FFCP PHASE1:Hg19::chr9:135964996..135965001,+#_86c8842de92bb34e78ab840208c7dc62p@chr9:135964996..135965001, +
1.55e-98FFCP PHASE1:Hg19::chr1:240177602..240177607,+#_86c8842de92bb34e78ab840208c7dc62p17@FMN2
1.55e-98FFCP PHASE1:Hg19::chr6:22290447..22290450,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22290447..22290450, -
1.55e-98FFCP PHASE1:Hg19::chr5:135732714..135732721,-#_86c8842de92bb34e78ab840208c7dc62p2@ENST00000514282
1.55e-98FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135472861..135472868, -
1.55e-98FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_86c8842de92bb34e78ab840208c7dc62p@chr3:139938385..139938390, +
1.55e-98FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:72297717..72297725, -
1.55e-98FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_86c8842de92bb34e78ab840208c7dc62p2@PLCL2-AS1
1.55e-98FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:9178350..9178369, -
1.55e-98FFCP PHASE2:Hg19::chr4:68620100..68620112,-#_86c8842de92bb34e78ab840208c7dc62p1@GNRHR
1.55e-98FFCP PHASE2:Hg19::chr10:123959529..123959547,+#_86c8842de92bb34e78ab840208c7dc62p@chr10:123959529..123959547, +
1.55e-98FFCP PHASE1:Hg19::chr3:133115455..133115457,+#_86c8842de92bb34e78ab840208c7dc62p@chr3:133115455..133115457, +
1.55e-98FFCP PHASE1:Hg19::chr1:99798419..99798422,-#_86c8842de92bb34e78ab840208c7dc62p@chr1:99798419..99798422, -
1.55e-98FFCP PHASE1:Hg19::chr7:31006649..31006651,+#_86c8842de92bb34e78ab840208c7dc62p@chr7:31006649..31006651, +
1.55e-98FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18041194..18041197, -
1.55e-98FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_86c8842de92bb34e78ab840208c7dc62p9@PRR16
1.55e-98FFCP PHASE1:Hg19::chr6:22287695..22287700,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287695..22287700, -
1.55e-98FFCP PHASE2:Hg19::chr8:135504314..135504320,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135504314..135504320, -
1.55e-98FFCP PHASE2:Hg19::chr7:31006831..31006834,+#_86c8842de92bb34e78ab840208c7dc62p@chr7:31006831..31006834, +
1.55e-98FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_86c8842de92bb34e78ab840208c7dc62p@chr3:100942376..100942381, -
1.55e-98FFCP PHASE2:Hg19::chr6:22287710..22287718,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287710..22287718, -
1.55e-98FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_86c8842de92bb34e78ab840208c7dc62p3@NEUROG1
1.55e-98FFCP PHASE2:Hg19::chr19:49519519..49519562,-#_86c8842de92bb34e78ab840208c7dc62p2@CU678753
1.55e-98FFCP PHASE1:Hg19::chr3:130248948..130248959,+#_86c8842de92bb34e78ab840208c7dc62p@chr3:130248948..130248959, +
1.55e-98FFCP PHASE2:Hg19::chr8:130017368..130017390,+#_86c8842de92bb34e78ab840208c7dc62p@chr8:130017368..130017390, +
1.55e-98FFCP PHASE1:Hg19::chrX:38147077..38147085,-#_86c8842de92bb34e78ab840208c7dc62p@chrX:38147077..38147085, -
1.55e-98FFCP PHASE2:Hg19::chr17:61996160..61996176,-#_86c8842de92bb34e78ab840208c7dc62p3@GH1
1.55e-98FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_86c8842de92bb34e78ab840208c7dc62p11@SRRM3
1.55e-98FFCP PHASE1:Hg19::chr6:33087873..33087886,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:33087873..33087886, -
1.55e-98FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_86c8842de92bb34e78ab840208c7dc62p@chr10:80984180..80984190, -
1.55e-98FFCP PHASE1:Hg19::chr17:61995480..61995499,-#_86c8842de92bb34e78ab840208c7dc62p@chr17:61995480..61995499, -
1.55e-98FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18041244..18041266, -
1.55e-98FFCP PHASE2:Hg19::chr9:75733141..75733143,+#_86c8842de92bb34e78ab840208c7dc62p@chr9:75733141..75733143, +
1.55e-98FFCP PHASE2:Hg19::chr8:135473983..135473986,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135473983..135473986, -
1.55e-98FFCP PHASE2:Hg19::chr20:58401898..58401905,+#_86c8842de92bb34e78ab840208c7dc62p@chr20:58401898..58401905, +
1.55e-98FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:17185958..17185998, +
1.55e-98FFCP PHASE1:Hg19::chr16:21049173..21049231,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:21049173..21049231, -
1.55e-98FFCP PHASE1:Hg19::chr13:21399081..21399087,+#_86c8842de92bb34e78ab840208c7dc62p@chr13:21399081..21399087, +
1.55e-98FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_86c8842de92bb34e78ab840208c7dc62p4@CHRNB2
1.55e-98FFCP PHASE1:Hg19::chr11:72297712..72297715,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:72297712..72297715, -
1.55e-98FFCP PHASE2:Hg19::chr17:61995432..61995458,-#_86c8842de92bb34e78ab840208c7dc62p@chr17:61995432..61995458, -
1.55e-98FFCP PHASE2:Hg19::chr5:136699666..136699696,-#_86c8842de92bb34e78ab840208c7dc62p@chr5:136699666..136699696, -
1.55e-98FFCP PHASE2:Hg19::chr4:20985967..20985972,-#_86c8842de92bb34e78ab840208c7dc62p28@KCNIP4
1.55e-98FFCP PHASE2:Hg19::chr8:99033417..99033423,+#_86c8842de92bb34e78ab840208c7dc62p17@MATN2
1.55e-98FFCP PHASE2:Hg19::chr7:9228468..9228494,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:9228468..9228494, -
1.55e-98FFCP PHASE1:Hg19::chr2:108602341..108602352,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:108602341..108602352, +
1.55e-98FFCP PHASE1:Hg19::chr17:61994613..61994649,-#_86c8842de92bb34e78ab840208c7dc62p@chr17:61994613..61994649, -
1.55e-98FFCP PHASE1:Hg19::chr6:13009334..13009341,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:13009334..13009341, -
1.55e-98FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_86c8842de92bb34e78ab840208c7dc62p@chr14:55282406..55282415, -
1.55e-98FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18063669..18063678, -
1.55e-98FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:18036005..18036011, -
1.55e-98FFCP PHASE1:Hg19::chr6:22292828..22292837,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22292828..22292837, -
1.55e-98FFCP PHASE1:Hg19::chr16:51175701..51175708,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:51175701..51175708, -
1.55e-98FFCP PHASE2:Hg19::chr6:22287787..22287798,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287787..22287798, -

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