CL:0002504: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002504
|name=enteric smooth muscle cell
|namespace=cell
|def="A smooth muscle cell of the intestine." [GOC:tfm]
|xref=
|is_a=CL:0000192
|synonym="intestina...") |
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|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A smooth muscle cell of the intestine." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002504 | |||
|is_a=CL:0000192 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=enteric smooth muscle cell | ||
|namespace=FANTOM | |||
|obo_creation_date=2011-01-17T03:39:38Z | |||
|part_of=UBERON:0000160 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym="intestinal smooth muscle cell" EXACT [] | |||
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|xref= | |||
}} | }} |
Latest revision as of 16:43, 12 September 2014
Name: | enteric smooth muscle cell |
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Namespace: | FANTOM |
Definition: | "A smooth muscle cell of the intestine." [GOC:tfm] |
Synonyms: | "intestinal smooth muscle cell" EXACT [] |
Created by: | tmeehan |
Creation date: | 2011-01-17T03:39:38Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000192(smooth muscle cell) |
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part_of: | UBERON:0000160(intestine) |
Children
is a: | CL:1000279 (smooth muscle cell of large intestine) |
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derives from: | FF:0000180 (human smooth muscle cell of intestine sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
- 11509-119G6 (Smooth Muscle Cells - Intestinal, donor1)
- 11589-120G5
- 11670-122G5
Mouse (Mus musculus)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
- 11509-119G6 (Smooth Muscle Cells - Intestinal, donor1)
- 11589-120G5
- 11670-122G5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002504 (enteric smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data