FFCP PHASE1:Hg19::chrX:9754429..9754449,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=357 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=630 | |||
|TSSclassifier=strong | |||
|UniProt=Q13796 | |||
|association_with_transcript=-46bp_to_ENST00000380913,NM_001649,uc004csu.1_5end | |||
|description=CAGE_peak_4_at_SHROOM2_5end | |||
|id=chrX:9754429..9754449,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.28e-22!254;CL:0002139!1.57e-14!24;CL:0000115!2.98e-14!35;CL:0002078!8.42e-14!44;CL:0000213!8.89e-14!57;CL:0000215!8.89e-14!57;CL:0000071!2.75e-11!18;CL:0002546!2.75e-11!18;CL:0000076!1.18e-10!62;CL:0002321!9.92e-09!248;CL:0000220!4.36e-08!246 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.48e-19;24!CL:0000115;1.74e-18;36!CL:0000071;1.69e-12;18!CL:0002078;2.78e-11;45!CL:0002543;1.46e-10;6!CL:0000213;4.49e-10;58!CL:0000215;4.49e-10;58!CL:0002322;2.76e-09;5!CL:0002138;1.11e-08;6!CL:0000147;1.15e-07;14!CL:0000148;4.20e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,9.77e-22,36;CL:0002139,7.15e-20,24;CL:0002078,3.62e-19,45;CL:0000213,6.63e-17,58;CL:0000215,6.63e-17,58;CL:0000066,1.17e-16,253;CL:0000071,2.30e-13,18;CL:0002546,2.30e-13,18;CL:0002543,8.01e-11,6;CL:0002322,1.90e-09,5;CL:0005020,2.32e-08,6;CL:0002138,2.32e-08,6;CL:0005022,2.32e-08,6;CL:0000147,1.03e-07,14;CL:0000222,2.44e-07,121;CL:0000148,3.86e-07,10;CL:0000541,3.86e-07,10;CL:0002321,4.61e-07,250;CL:0000076,5.81e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;1.69e-12;18!CL:0005022;1.11e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!1.22e-18!241;UBERON:0000477!9.55e-16!286;UBERON:0000025!1.81e-14!194;UBERON:0000483!1.79e-13!309;UBERON:0000119!1.99e-13!312;UBERON:0000468!3.99e-12!659;UBERON:0000922!1.20e-11!612;UBERON:0001986!2.75e-11!18;UBERON:0004638!2.75e-11!18;UBERON:0004852!2.75e-11!18;UBERON:0000487!4.42e-10!22;UBERON:0007023!4.61e-10!115;UBERON:0005172!1.01e-09!55;UBERON:0005173!1.01e-09!55;UBERON:0000467!1.51e-09!625;UBERON:0000480!2.10e-09!626;UBERON:0003064!2.27e-09!37;UBERON:0005177!2.59e-09!107;UBERON:0002050!2.62e-09!605;UBERON:0005423!2.62e-09!605;UBERON:0000466!2.77e-09!126;UBERON:0000923!5.10e-09!604;UBERON:0005291!5.10e-09!604;UBERON:0006598!5.10e-09!604;UBERON:0002532!5.10e-09!604;UBERON:0006914!1.46e-08!25;UBERON:0001008!1.84e-08!45;UBERON:0005743!2.61e-08!86;UBERON:0005156!2.68e-08!59;UBERON:0000990!2.68e-08!59;UBERON:0000489!5.78e-08!32;UBERON:0000481!6.00e-08!347;UBERON:0006554!6.63e-08!44;UBERON:0009569!6.90e-08!113;UBERON:0002417!7.79e-08!61;UBERON:0000916!7.79e-08!61;UBERON:0003914!8.74e-08!118;UBERON:0000064!9.67e-08!219;UBERON:0004119!2.39e-07!169;UBERON:0000925!2.39e-07!169;UBERON:0006595!2.39e-07!169;UBERON:0000062!2.77e-07!511;UBERON:0003133!3.63e-07!48;UBERON:0005911!4.12e-07!82;UBERON:0001017!5.05e-07!82;UBERON:0000058!6.89e-07!26;UBERON:0004876!7.58e-07!20;UBERON:0000073!8.16e-07!94;UBERON:0001016!8.16e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.69e-12;18!UBERON:0001986;1.69e-12;18!UBERON:0004852;1.69e-12;18!UBERON:0000487;3.26e-11;22!UBERON:0006914;2.01e-09;25!UBERON:0000490;9.57e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.30e-13,18;UBERON:0001986,2.30e-13,18;UBERON:0004852,2.30e-13,18;UBERON:0000487,4.76e-12,22;UBERON:0006914,3.91e-10,25;UBERON:0004111,4.00e-08,240;UBERON:0001008,4.41e-08,48;UBERON:0006554,2.96e-07,47;UBERON:0000058,5.45e-07,19;UBERON:0001638,7.50e-07,9;UBERON:0003920,7.50e-07,9;UBERON:0004582,7.50e-07,9;UBERON:0003914,8.76e-07,117 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,1.39560233594486,1.31064823278103,1.84636884759917,0,0.994192127183747,0.672325146451775,0,0,0,0,0,0.313454721478088,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15076305659177,0,0,0,0,0,0.0945348171640679,0,0.351339142772504,1.11332214173056,2.18577172975525,0.370784442784429,0.324547393654683,0.696518949197069,0.664789802594326,0,0.571994910780128,0,1.78886166630035,0.860234595106124,1.73570250803797,0.56530794192401,0.838998872419812,1.37559020970034,1.67195973229448,1.29208379584664,1.06729878806013,1.33888245105868,0.402829317109147,0.760272105718513,1.46437234528902,1.47065232138347,1.62028389576352,1.51809538082936,2.02076435363553,2.0270066486998,4.5994991239765,1.89853131913626,2.38162267109529,0,0,1.3082821564276,0,0,0,0,0,0.560677600142307,1.06748995729705,0.24666754841716,0,0.404132016209064,0.490385709340376,0.302714855289863,0.576175924479999,0,0,0,0,0,0,0,0,0.245668634623536,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.545492241181669,1.14721838155602,2.31750041646231,2.38553582978673,1.62671520017326,2.69518743039963,2.01856680700503,1.45990943630332,0,0,0,0,0,0.354920400119532,0,0.241011029883482,0.220587945464788,0,0,0,0,0,2.21446636387394,2.80483547606892,2.057870056657,1.47008711385542,2.53510069643662,0.982827216677626,0.590789906681404,0,1.22988438543114,0,0.109750285408626,1.1240175325762,0.100528972411631,0.648119116109707,0,0,0,0.115930404975077,0.234817388471643,1.15493158208859,1.38895653772983,1.71228737011138,0.790204397959275,0,0,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0.144119953416961,0,0.380987365753014,1.14596527667483,1.17217447210047,1.71072446022705,0,0.300343057843917,1.42913216315289,0.112131084345361,0,0.2933531432838,0.387815147273333,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0.823240336780769,0,1.06617584622764,0,1.80863626235752,0,1.89948683245908,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0.36807447515742,0,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,3.32629322662648,0,0,0,0,0,0.321707842287215,1.48418066444991,0,0,0,0,0,1.0877350463246,0.802025881213139,1.01289087829486,0,0,0.262248829918848,0.451199612907412,0.462092022626489,2.35304930753057,1.46139224653261,0.422206515571503,1.13733384070897,1.19065593693561,0.647747748306418,3.08454505380579,1.89662506280697,0.501689773854853,1.78413391131527,0,0.447749509444357,0,0,1.02580050046556,1.96808787419823,0.650756789328606,0.9273691048295,0,0,2.87132768998086,0,1.6068392984416,0,0,0,0,0,0,0,0,0.826424576804891,0.384380134730212,1.53135254993501,1.71968227454435,0,0,0,0.616067160352178,0.532306030317022,0,0,0,0,0.316379424718726,1.5250415513906,0.255897791311334,0,0,0,0.359744915166629,0,0,0.202182481573316,0,0,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0.655894752046633,1.42037263873893,0,0.845086807596724,0.430234056612155,0.88424136911809,1.78335525740625,0,0,0,0,0,0.384888450902048,0,0,1.60044461320525,0,0,2.21715076768338,1.37834040124176,0,0,0,0,0,0,0,0,0.213648142254946,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0.242721043499027,0,0,1.90995587790152,0.593929361665277,0.921482106297696,0.994147647766298,0.844016498463076,0,0,0.422250816255987,0.398495976502139,0.552567831062295,0,0.102268682502155,0,0,0.629078458031288,0.358042349351218,0,0.690503839458535,0,0,0.969332746095218,0.371072392647405,0,2.3438498497671,1.22443999994674,0.724999575434793,0.227586896570999,0,0.236387681767936,0.344743373241465,0,0.173624994933292,1.77148277162768,1.08536794762867,0,0.552896299656123,0,0.219385397153973,0,2.50962739701486,1.30815439456455,0.113942055847001,1.1528195219403,0.897576444097721,1.19512109114209,2.23300811812344,1.55715908783166,0,0,0,0,0,0,0,0,0,0.210998064528027,1.30586246527318,0.989471500037586,0.216388639742091,0,0.442287822516696,0.611030144933625,0,0,0,0.808813595768125,1.60515529459758,0,0,0.586993856796269,0,1.57833761139756,2.41981432097328,0,0.442306057399416,0,0.207376382794494,0,0,0,0,1.13843818411917,0,0.173559738335131,0.587954384486266,0,0.873633341210151,0,0,0,0,1.26085721434945,0.529536760149002,0.677942222341597,0,0.19871461170299,0.379864775735272,0.195551382734803,0,0.426905989478705,0.599428828746391,0.72045208577053,0.458146384663663,0,0,0.49701014226173,0.235694034616795,0.543616824294456,0.209205692624666,0,0,0.600420288709789,0.958337652243951,0,1.71906176567983,0,0,0,0,0.399358000997982,0,0.223171457441873,1.00775208730089,0.360299883542404,0,0.709048640765013,0.329663433524666,0.674035438541849,0.295282444544246,0,0,0.9534238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| |||
|short_description=p4@SHROOM2 | |||
}} |
Revision as of 04:45, 23 January 2014
Short description: | p4@SHROOM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SHROOM2_5end |
Coexpression cluster: | NA |
Association with transcript: | -46bp_to_ENST00000380913, NM_001649, uc004csu.1_5end |
EntrezGene: | SHROOM2 |
HGNC: | 630 |
UniProt: | Q13796 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 9.77e-22 | 36 |
endothelial cell of vascular tree | 7.15e-20 | 24 |
meso-epithelial cell | 3.62e-19 | 45 |
lining cell | 6.63e-17 | 58 |
barrier cell | 6.63e-17 | 58 |
epithelial cell | 1.17e-16 | 253 |
blood vessel endothelial cell | 2.30e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.30e-13 | 18 |
vein endothelial cell | 8.01e-11 | 6 |
embryonic stem cell | 1.90e-09 | 5 |
lymphangioblast | 2.32e-08 | 6 |
endothelial cell of lymphatic vessel | 2.32e-08 | 6 |
vascular lymphangioblast | 2.32e-08 | 6 |
pigment cell | 1.03e-07 | 14 |
mesodermal cell | 2.44e-07 | 121 |
melanocyte | 3.86e-07 | 10 |
melanoblast | 3.86e-07 | 10 |
embryonic cell | 4.61e-07 | 250 |
squamous epithelial cell | 5.81e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.30e-13 | 18 |
endothelium | 2.30e-13 | 18 |
cardiovascular system endothelium | 2.30e-13 | 18 |
simple squamous epithelium | 4.76e-12 | 22 |
squamous epithelium | 3.91e-10 | 25 |
anatomical conduit | 4.00e-08 | 240 |
renal system | 4.41e-08 | 48 |
urinary system structure | 2.96e-07 | 47 |
duct | 5.45e-07 | 19 |
vein | 7.50e-07 | 9 |
venous blood vessel | 7.50e-07 | 9 |
venous system | 7.50e-07 | 9 |
epithelial tube | 8.76e-07 | 117 |