FFCP PHASE1:Hg19::chr6:31689515..31689539,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80740 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13936 | |||
|TSSclassifier=weak | |||
|UniProt=O95867,Q5SRS8 | |||
|association_with_transcript=-4bp_to_NM_025261_5end | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_1_at_LY6G6C_5end | |||
|id=chr6:31689515..31689539,- | |||
|ontology_enrichment_celltype=CL:0000622!1.91e-10!5;CL:0000154!1.31e-08!6;CL:0002251!1.58e-08!21;CL:0000150!1.00e-07!9;CL:0002541!1.80e-07!3;CL:0000349!6.18e-07!3;CL:0002577!6.18e-07!3;CL:0002623!7.68e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;3.71e-19;19!CL:0002541;5.14e-13;3!CL:0000622;9.35e-13;5!CL:0000154;1.22e-10;6!CL:0000150;1.77e-10;9!CL:0000317;1.03e-08;2!CL:1000448;1.03e-08;2!CL:0002308;1.03e-08;2!CL:0002140;1.03e-08;2!CL:0001014;2.10e-08;2!CL:0001016;2.10e-08;2!CL:0002537;2.91e-08;5!CL:0002536;4.71e-08;2!CL:0000362;3.70e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.27e-19,19;CL:0002541,5.35e-13,3;CL:0000622,9.35e-13,5;CL:0000154,1.22e-10,6;CL:0000150,1.82e-10,9;CL:0000317,1.12e-08,2;CL:1000448,1.12e-08,2;CL:0002308,1.12e-08,2;CL:0002140,1.12e-08,2;CL:0001014,1.84e-08,2;CL:0001016,1.84e-08,2;CL:0002537,2.91e-08,5;CL:0002536,3.50e-08,2;CL:0000362,3.76e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.91e-20!14;UBERON:0000158!3.91e-20!14;UBERON:0003124!1.07e-14!7;UBERON:0004923!9.13e-11!57;UBERON:0000478!2.43e-10!24;UBERON:0001987!6.71e-09!4;UBERON:0004340!6.71e-09!4;UBERON:0000305!1.01e-07!7;UBERON:0000166!1.70e-07!21;UBERON:0000476!1.80e-07!3;UBERON:0000920!1.80e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.40e-24;10!UBERON:0000158;1.40e-24;10!UBERON:0000478;5.71e-18;24!UBERON:0000305;4.58e-14;7!UBERON:0003124;5.14e-13;3!UBERON:0000920;5.14e-13;3!UBERON:0001987;1.23e-09;4!UBERON:0002419;1.03e-08;2!UBERON:0007771;1.03e-08;2!UBERON:0003297;1.03e-08;2!UBERON:0001821;1.03e-08;2!UBERON:0003487;1.03e-08;2!UBERON:0001820;1.03e-08;2!UBERON:0002370;3.31e-08;2!UBERON:0005058;3.31e-08;2!UBERON:0009113;3.31e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.26e-32,14;UBERON:0000158,1.26e-32,14;UBERON:0003124,1.96e-20,7;UBERON:0000478,5.08e-18,24;UBERON:0000305,3.68e-14,7;UBERON:0000920,5.35e-13,3;UBERON:0004871,2.38e-12,8;UBERON:0004923,7.14e-10,66;UBERON:0001042,1.04e-09,10;UBERON:0009145,1.04e-09,10;UBERON:0001987,1.23e-09,4;UBERON:0004340,1.23e-09,4;UBERON:0006562,8.55e-09,11;UBERON:0002419,1.12e-08,2;UBERON:0007771,1.12e-08,2;UBERON:0003297,1.12e-08,2;UBERON:0001821,1.12e-08,2;UBERON:0003487,1.12e-08,2;UBERON:0001820,1.12e-08,2;UBERON:0005089,1.12e-08,2;UBERON:0005088,1.12e-08,2 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,1.74753097704138,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,3.71558695958582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,1.09098448236334,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45976877086227,0,13.7187856760782,6.74410519545717,0.603173834469785,0,0,0,0,0,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,0,0,0.141775097242386,0,0,0,64.0462209264727,0,0.207328115540772,0.144119953416961,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,24.8564608585933,3.32870879020994,0.907170879989041,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,3.19427136107939,0,0,2.29706215198469,10.4009639365843,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95403963262472,0,0,4.43430153536676,0.229723400206959,0,0,0,0.476463550915578,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.556812347790485,0,0.540911356951966,0,0,0,0,0,0,0,830.353317917686,120.567660418051,649.030563535677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,4.0432885840795,4.15531395920504,0,1.1528195219403,2.42345639906385,5.64966333994442,200.013727151914,6.04544116452291,17.0571128325963,0,0,0,0,0,0,0,0,0,0,1.13082457147153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.293977192243133,0,0,0.171986032471617,0,0,0,7.85611033556197,0,0.677942222341597,0,0,0.0633107959558787,1.17330829640882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0.0671834724867263,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,1.349843349309,4.6428117273477,0.0607495566580247,5.70238968918752,0,0,0,0,0,0,0,0,0,0,0,0,0.492555124496034,0,0,0,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28664954824955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,3.73246356019784,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0.11796972334774,0.183428598521679,0,0,0,0,0,0,0,4.45241380618418,0.163771917510097,0,0,0,0,0.0634158101939068,0,0,11.4128571029538,0,0,0,0,0,0,36.9001859876578,0,0,0,0.131545547125698,0,0,0,0.157115589916002,6.16598759290336,0,0,0,0,0,0,0,0,0.414432328326074,2.90221411059715,111.292805552069,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,54.3996312226236,0,2.98426162742052,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0.61193297845189,0,0,0,0.0757786982182394,0,0,0,15.1396127149696,0,2.38978966393223,1.98639085746745,0,0,0,84.474098184021,48.9393620551952,36.1680524688335,0.143444410785353,0,0,0,0,0,0,0.733448665097199,3.25516942652591,0,0,0 | |||
|short_description=p1@LY6G6C | |||
}} |
Revision as of 11:06, 22 January 2014
Short description: | p1@LY6G6C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LY6G6C_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -4bp_to_NM_025261_5end |
EntrezGene: | LY6G6C |
HGNC: | 13936 |
UniProt: | O95867Q5SRS8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.27e-19 | 19 |
chorionic membrane mesenchymal stem cell | 5.35e-13 | 3 |
acinar cell | 9.35e-13 | 5 |
protein secreting cell | 1.22e-10 | 6 |
glandular epithelial cell | 1.82e-10 | 9 |
sebum secreting cell | 1.12e-08 | 2 |
epithelial cell of sweat gland | 1.12e-08 | 2 |
epithelial cell of skin gland | 1.12e-08 | 2 |
acinar cell of sebaceous gland | 1.12e-08 | 2 |
CD1a-positive Langerhans cell | 1.84e-08 | 2 |
immature CD1a-positive Langerhans cell | 1.84e-08 | 2 |
amnion mesenchymal stem cell | 2.91e-08 | 5 |
amniotic epithelial cell | 3.50e-08 | 2 |
epidermal cell | 3.76e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.26e-32 | 14 |
membranous layer | 1.26e-32 | 14 |
chorion | 1.96e-20 | 7 |
extraembryonic structure | 5.08e-18 | 24 |
amnion | 3.68e-14 | 7 |
egg chorion | 5.35e-13 | 3 |
somatic layer of lateral plate mesoderm | 2.38e-12 | 8 |
organ component layer | 7.14e-10 | 66 |
chordate pharynx | 1.04e-09 | 10 |
pharyngeal region of foregut | 1.04e-09 | 10 |
placenta | 1.23e-09 | 4 |
allantois | 1.23e-09 | 4 |
pharynx | 8.55e-09 | 11 |
skin gland | 1.12e-08 | 2 |
epidermis gland | 1.12e-08 | 2 |
gland of integumental system | 1.12e-08 | 2 |
sebaceous gland | 1.12e-08 | 2 |
skin sebaceous gland | 1.12e-08 | 2 |
sweat gland | 1.12e-08 | 2 |
sweat gland placode | 1.12e-08 | 2 |
sebaceous gland placode | 1.12e-08 | 2 |