FFCP PHASE1:Hg19::chr5:138940893..138940983,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7322 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12475 | |||
|TSSclassifier=strong | |||
|UniProt=D6RFM0 | |||
|association_with_transcript=141bp_to_ENST00000505007_5end | |||
|description=CAGE_peak_1_at_UBE2D2_5end | |||
|id=chr5:138940893..138940983,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.33e-24!254;CL:0002321!2.37e-09!248;CL:1000497!2.79e-09!18;CL:0002518!2.79e-09!18;CL:0000220!9.43e-09!246;CL:1000449!3.05e-08!16;CL:0000076!1.21e-07!62;CL:0000945!1.95e-07!24;CL:0000826!1.95e-07!24;CL:0000542!3.29e-07!53;CL:0000051!3.29e-07!53;CL:0000838!5.79e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:1000497;4.90e-10;17!CL:0002518;4.90e-10;17!CL:1000449;5.42e-09;15!CL:0000945;1.77e-07;24!CL:0002681;2.21e-07;12!CL:0002584;2.21e-07;12!CL:1000507;6.48e-07;10!CL:1000494;6.48e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.40e-24,253;CL:1000497,4.70e-10,17;CL:0002518,4.70e-10,17;CL:0002321,1.65e-09,250;CL:1000449,5.23e-09,15;CL:0000945,1.95e-07,24;CL:0000826,1.95e-07,24;CL:0002681,2.12e-07,12;CL:0002584,2.12e-07,12;CL:0000076,2.40e-07,63;CL:0000542,3.29e-07,53;CL:0000051,3.29e-07,53;CL:0000838,5.79e-07,52;CL:1000507,6.35e-07,10;CL:1000494,6.35e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.72e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.72e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004211!3.05e-08!16;UBERON:0001285!3.05e-08!16;UBERON:0007684!3.05e-08!16;UBERON:0003220!3.05e-08!16;UBERON:0004208!3.05e-08!16;UBERON:0001008!7.24e-08!45;UBERON:0006554!1.06e-07!44;UBERON:0000353!1.58e-07!17;UBERON:0006555!3.02e-07!17;UBERON:0005103!3.02e-07!17;UBERON:0000083!3.02e-07!17;UBERON:0009201!3.02e-07!17;UBERON:0004819!3.02e-07!17;UBERON:0006553!3.02e-07!17;UBERON:0003074!3.02e-07!17;UBERON:0003060!3.02e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.43e-09;30!UBERON:0001008;2.43e-09;30!UBERON:0006555;5.42e-09;15!UBERON:0004819;5.42e-09;15!UBERON:0001285;5.42e-09;15!UBERON:0007684;5.42e-09;15!UBERON:0000353;2.03e-08;15!UBERON:0001225;2.21e-07;12!UBERON:0008987;2.21e-07;12!UBERON:0001851;4.86e-07;15!UBERON:0002113;6.25e-07;24!UBERON:0011143;6.25e-07;24!UBERON:0004211;6.48e-07;10!UBERON:0009773;6.48e-07;10!UBERON:0001231;6.48e-07;10!UBERON:0004810;6.48e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,5.23e-09,15;UBERON:0009773,5.23e-09,15;UBERON:0001231,5.23e-09,15;UBERON:0001285,5.23e-09,15;UBERON:0007684,5.23e-09,15;UBERON:0004208,5.23e-09,15;UBERON:0000353,1.88e-08,15;UBERON:0001008,6.27e-08,48;UBERON:0006555,6.84e-08,16;UBERON:0004819,6.84e-08,16;UBERON:0006554,9.22e-08,47;UBERON:0001225,2.12e-07,12;UBERON:0008987,2.12e-07,12;UBERON:0005177,2.45e-07,101;UBERON:0001851,4.82e-07,15;UBERON:0004810,6.35e-07,10 | |||
|phase1_expression=49.4165191615914,49.8854220665991,43.4139564615591,60.0439790118782,58.998864464402,65.4253893075277,63.3249695420776,63.1719873426831,56.677281319365,130.730454218803,281.911671860861,101.13835529627,113.419800638235,64.2347371862642,76.8841911688765,71.2664655238882,67.5017871386854,65.7279081348636,72.214054220995,127.184052993322,120.564408525354,102.499693923335,95.0303477275108,105.803930581339,112.737290356133,117.141751011609,115.433428766624,124.126902131672,32.2558707016101,33.3931576344575,45.2063080082942,57.0041159176935,96.9883058465965,99.4638287348659,102.101770364838,68.5255700589372,46.3888694149059,34.3477153289764,46.9274007080132,41.8830980481594,51.9483900236624,42.1061765824673,55.6363226089843,33.1507984417408,35.5203387067481,34.2043526274821,26.7293392441537,32.8934310417461,34.0677007984614,34.8107794709802,29.2023205443175,25.5400808279672,25.1664346937732,38.0835963314457,46.0450054420762,39.1544066248618,27.8364273059003,23.1465188978437,33.6692281607993,32.7347607617615,25.5734850319616,31.6657248179247,34.5072127685423,32.8193057910174,24.6677852834296,27.2344907851747,24.2900677108274,36.6823051274845,35.9823213709939,36.0533482210494,29.6645756290351,22.0966581592539,25.3169909952708,23.6605920669375,27.0007460955605,30.8198208897313,34.260232499681,33.3392702108144,25.2339171114416,34.4865419926911,34.8104185098408,33.427540138928,139.037033124445,122.335048922717,126.310314048625,139.967513001814,119.318004136732,141.963852668757,147.413006631024,138.337794407628,106.442825223467,85.1493924587861,93.2746676625558,46.2599650026591,51.5667877943013,62.9487962612434,82.4213936776961,70.7419372948496,78.9509756158115,72.5589389995543,93.5396905238404,103.685069455907,91.5685623517183,69.6315355532335,96.9253435592214,108.994676135142,76.0958857179694,78.7761616312902,81.0269735298041,64.9529723184521,64.3895541441027,62.5974665187713,92.8273885394498,87.2183099572465,82.5830638059317,66.852512191564,77.4105397075881,85.2196064796922,53.6401747081346,94.2953626399326,94.4071008091807,94.094752400389,100.283029305797,80.3755918049747,72.4598214003606,66.2976305723247,89.5029516643941,70.5623601286564,67.6623695332273,87.4739399452106,36.5710299470943,56.3388722151054,102.034324351137,70.842073867375,51.6378047954966,71.5541803666469,34.9925816702484,57.9095495660137,76.4786670857309,76.4966421245846,79.6661506236653,77.4086336191482,223.313011723328,176.122610322604,54.5239621339868,46.4926398589043,65.1494006542439,81.8022841367323,59.4874707211333,78.7489902818678,91.8282322034178,67.0982984182777,151.006118199304,80.8390356951334,113.684347212885,121.87729257945,70.640298689442,91.7379495051118,83.6050717313769,84.0148738039322,104.332793131269,69.9450337261032,103.97043651552,118.38751187137,85.8750464754665,96.4437065468062,110.019392586823,142.453522811403,73.591985983624,64.5500648506328,98.9289417224199,43.4875377539009,27.1446184903828,213.686085549842,67.5881854305633,75.9783069987479,36.0152971811955,44.4596762160661,95.7604631935564,68.9633448175038,50.1720279929613,82.6336287197486,71.5785381419463,83.1164846669975,85.6540372314524,111.09635189138,55.8890646745599,213.701145832423,95.2088234332478,69.5975622284228,106.258011872331,119.548319619353,122.699691831044,114.748309075737,77.3744309056045,104.777672666938,102.395849145184,70.0921685796412,81.3508197326452,194.774531454738,125.758174817842,89.049804281701,120.489134636701,101.959594498179,56.6281130936281,56.0872666312206,74.6683152765786,80.3099856772949,37.4924338589721,53.3893472046419,57.8574090165604,38.7117513948879,68.323826885085,38.90372154689,61.9769131584194,30.5485161356692,65.7699784838091,40.6418376533024,60.568833306633,78.7216296707614,40.471093546894,72.3400065274457,61.7200556010175,69.5739071387869,74.7324370418887,64.2442293671369,195.401877219612,170.963401134716,191.255229963227,165.339382749516,165.270157323537,133.581713421754,43.8058690523485,73.3294669539889,56.635317754517,58.9747268600613,62.0816354235844,76.4261928257392,71.9856626633494,75.4364523535299,82.0587157129011,72.3359754386788,68.5712089231069,72.2695811738481,69.6586201194979,66.9460053086719,149.107401834179,179.509470468411,80.6685062209544,89.6753139451806,31.6887587054577,37.3474342337498,54.3526714146892,52.9755719297581,89.2896063823004,107.05831362628,116.884053960186,86.5493500083671,130.285548245474,118.976152028711,183.430075889713,131.031782945227,98.1453125771858,107.583415816871,89.8176510904036,69.1515284775544,96.7639721285116,64.3059034552942,81.3910529898053,86.7071023715821,50.2282692418291,72.7753264583029,81.0039834473569,90.9218189671737,73.9121364074982,84.0726326647352,101.55936474503,96.7811015251493,84.3441894163465,61.5829047369929,69.3821660024221,89.5657459136135,102.325166926043,108.947220046966,85.4681657172595,100.844944347385,59.780898077124,54.7431827272657,94.087155823541,75.6864505766672,70.8849552923834,153.95597880618,122.940739410985,84.4123669799135,48.9939802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| |||
|short_description=p1@UBE2D2 | |||
}} |
Revision as of 07:45, 22 January 2014
Short description: | p1@UBE2D2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UBE2D2_5end |
Coexpression cluster: | NA |
Association with transcript: | 141bp_to_ENST00000505007_5end |
EntrezGene: | UBE2D2 |
HGNC: | 12475 |
UniProt: | D6RFM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.40e-24 | 253 |
kidney cell | 4.70e-10 | 17 |
kidney epithelial cell | 4.70e-10 | 17 |
embryonic cell | 1.65e-09 | 250 |
epithelial cell of nephron | 5.23e-09 | 15 |
lymphocyte of B lineage | 1.95e-07 | 24 |
pro-B cell | 1.95e-07 | 24 |
kidney cortical cell | 2.12e-07 | 12 |
renal cortical epithelial cell | 2.12e-07 | 12 |
squamous epithelial cell | 2.40e-07 | 63 |
lymphocyte | 3.29e-07 | 53 |
common lymphoid progenitor | 3.29e-07 | 53 |
lymphoid lineage restricted progenitor cell | 5.79e-07 | 52 |
kidney tubule cell | 6.35e-07 | 10 |
nephron tubule epithelial cell | 6.35e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 5.23e-09 | 15 |
renal tubule | 5.23e-09 | 15 |
nephron tubule | 5.23e-09 | 15 |
nephron | 5.23e-09 | 15 |
uriniferous tubule | 5.23e-09 | 15 |
nephrogenic mesenchyme | 5.23e-09 | 15 |
parenchyma | 1.88e-08 | 15 |
renal system | 6.27e-08 | 48 |
excretory tube | 6.84e-08 | 16 |
kidney epithelium | 6.84e-08 | 16 |
urinary system structure | 9.22e-08 | 47 |
cortex of kidney | 2.12e-07 | 12 |
renal parenchyma | 2.12e-07 | 12 |
trunk region element | 2.45e-07 | 101 |
cortex | 4.82e-07 | 15 |
nephron tubule epithelium | 6.35e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.72e-07 | 106 |