FFCP PHASE1:Hg19::chr3:57112801..57112822,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=683 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=20bp_to_ENST00000477440_5end | |||
|description=CAGE_peak_7_at_ARHGEF3_5end | |||
|id=chr3:57112801..57112822,- | |||
|ontology_enrichment_celltype=CL:0000066!3.15e-15!254;CL:0000223!2.66e-11!59;CL:0002076!1.17e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000083;5.33e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.60e-10,253;CL:0000083,3.93e-09,4;CL:0000223,4.87e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.05e-09;13!UBERON:0004161;2.36e-08;11!UBERON:0006595;3.75e-08;86!UBERON:0003104;4.32e-08;31!UBERON:0009117;4.64e-07;10!UBERON:0005564;4.64e-07;10 | |||
|ontology_enrichment_disease=DOID:305!7.23e-30!106;DOID:0050687!5.31e-19!143;DOID:162!1.63e-10!235;DOID:14566!1.72e-10!239;DOID:1749!2.55e-09!14;DOID:299!5.83e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.81e-15;14!DOID:305;1.53e-09;106!DOID:1793;5.33e-09;4!DOID:170;6.65e-09;6!DOID:299;2.21e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.66e-31,106;DOID:0050687,6.31e-21,143;DOID:1749,1.70e-15,14;DOID:14566,2.93e-10,239;DOID:162,3.53e-10,235;DOID:1793,3.93e-09,4;DOID:170,5.95e-09,6;DOID:299,2.30e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0001007!1.86e-12!155;UBERON:0001555!1.86e-12!155;UBERON:0007026!1.86e-12!155;UBERON:0004119!4.91e-12!169;UBERON:0000925!4.91e-12!169;UBERON:0006595!4.91e-12!169;UBERON:0004921!1.81e-11!129;UBERON:0004185!1.81e-11!129;UBERON:0000077!7.10e-11!130;UBERON:0000062!1.00e-10!511;UBERON:0000466!1.82e-09!126;UBERON:0005177!5.15e-09!107;UBERON:0001041!5.49e-09!98;UBERON:0000464!1.52e-08!104;UBERON:0000922!4.80e-08!612;UBERON:0007023!3.17e-07!115;UBERON:0000058!5.52e-07!26;UBERON:0000481!7.54e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;2.47e-08;11!UBERON:0002423;8.20e-08;25!UBERON:0002294;1.37e-07;7!UBERON:0001173;1.37e-07;7!UBERON:0002075;1.70e-07;18!UBERON:0000058;3.82e-07;10!UBERON:0006947;6.49e-07;3!UBERON:0004054;6.49e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,1.10e-10,101;UBERON:0001007,7.35e-09,145;UBERON:0001555,7.35e-09,145;UBERON:0007026,7.35e-09,145;UBERON:0003135,2.39e-08,11;UBERON:0009497,7.09e-08,25;UBERON:0000015,7.09e-08,25;UBERON:0002423,7.09e-08,25;UBERON:0006235,7.09e-08,25;UBERON:0004161,7.09e-08,25;UBERON:0004119,8.06e-08,160;UBERON:0000925,8.06e-08,160;UBERON:0006595,8.06e-08,160;UBERON:0002075,1.00e-07,18;UBERON:0005172,1.44e-07,54;UBERON:0005173,1.44e-07,54;UBERON:0002323,1.45e-07,46;UBERON:0002553,1.97e-07,61;UBERON:0004921,3.30e-07,118;UBERON:0006947,6.75e-07,3;UBERON:0004054,6.75e-07,3;UBERON:0002110,6.89e-07,3;UBERON:0006242,6.89e-07,3;UBERON:0003886,7.15e-07,54;UBERON:0004458,7.22e-07,49;UBERON:0005911,8.77e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0,0,0,0,0,0,0,0,0.123121058076788,0,0,1.43117993565528,0.547497700291537,0.502170558379211,0.152826811495903,0.328402357799783,0.314843125254717,0.393364276848904,0,0,0,0,0.369754010166788,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0.818718450173537,0.449446968890169,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0,0.351339142772504,1.5062593682237,0,0,0.324547393654683,0,0.797747763113191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0.872188104285069,0,0,0,0.286836620748814,0.709336764396714,1.12135520028461,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0.0920498986422993,0.161646056818812,0,0,0,2.12586938479627,0,0.860413786167011,0.609868530647977,0.397589304964456,0.464775771478074,1.24393266018445,1.00928340350251,0.36497735907583,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.110293972732394,0,0.237270619111097,0.269662616320329,0,0.769494313892781,0,0,0,0,0,0,0,0,1.22988438543114,0.171567810298526,0,0,0.100528972411631,0.185176890317059,0,0,0,0.115930404975077,0.117408694235822,0,0,0.190254152234598,0,0,0,1.17002132569619,1.33768046059855,0,0.335964256397719,0.708875486211932,0.0895585227028483,0,0,0,0.352193736052904,7.67114027500857,8.2148373447668,6.18587923789262,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,2.10833939483032,0,0,0,0,0,0,0,0,0.215627574859517,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0.552485933615378,0.229628896329213,0,0.131124414959424,0.902399225814824,0.231046011313244,0.784349769176855,1.46139224653261,0.844413031143006,0,0,0.215915916102139,0,0.270946437543853,0,1.01950509218015,2.49322802678617,0.447749509444357,0,0,1.28225062558195,0.328014645699706,0.325378394664303,0.412164046590889,0,0,0.574265537996172,0,0,0.773365746336976,0,0,0,0,0.145016693914229,0.0852266274161009,0.356128142586949,0.495854746082934,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.0962221127255121,0.670302275535787,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0.270455678475983,0,0,0.37428108081644,0.439524537815682,0,0,0.284136146806413,0,0,0,0,0.281338832821026,0,0,0,0.796991953004279,0.276283915531148,0,3.06806047506464,0,0,4.13394415277704,0.716084698702437,0,0.789147245095469,0,0,0,0.0927680981618513,0,0.520855522170466,0.787139999965761,0.724999575434793,2.84483620713749,1.27126825146383,0.236387681767936,0,0,0,0,0.241192877250816,0,0,0,0,0.10893846351899,8.22600091243759,0.538651809526579,0.569710279235006,0.46112780877612,2.78248697670294,0.54323685961004,0,0.457987967009312,0.533034776018635,0,0,0,0.225595660617181,0,0,0,0,1.26598838716816,6.03961390188847,0.424059214301822,0,1.99052386215701,0.0884575645033392,0,0.296521128680622,0.247127877893006,0.626531697032732,0.337005664903385,0,0,0.364909578431332,2.93496928398135,3.3989253134773,1.57833761139756,0,0,0.189559738885464,0.300646838828985,0.207376382794494,0,0,0,0,2.56148591426813,0,2.2562765983567,3.13575671726008,1.65412492502765,4.36816670605075,0,1.74161396320353,1.46178634172371,1.47807822695777,1.26085721434945,0,0.677942222341597,0,0.19871461170299,0,1.95551382734803,2.08412932653988,2.98834192635094,0.999048047910651,8.64542502924636,0.114536596165916,0,1.4405479798815,1.98804056904692,1.88555227693436,0.407712618220842,0.627617077873999,0.101998217636322,1.73370353940911,0,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0.53746777989381,0,1.16495949527454,3.70280956843951,2.80213918495966,3.50498428041761,2.46068703786872,0,0,0.136203406111576,0.321506296930038,0.275078873194468,0,0,0,0,0.335434687599266,2.44297692627514,2.15063811353492,0.105600336519406,0,3.26255835443057,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0.226624183040251,0,0,0.258565912723101,0.13223260174269,0.513260513652988,6.34333520085005,0.427149650270779,0.314408610199332,0.414239055347196,0,0.592834895693833,0,1.27668251554036,0,0,0,0,0.785270481251171,0,0,0.1251909307065,1.72022758707021,0.443716206147409,0.558867626472451,0.138348634936231,0.37494122388632,0,0.285465333544967,0,0,0,0.149254802886874,0,0,0,0,1.77962244319307,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11881813448034,0,0,0.226705925512272,0.463044948647668,0.489473409012935,0.53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| |||
|short_description=p7@ARHGEF3 | |||
}} |
Revision as of 19:21, 21 January 2014
Short description: | p7@ARHGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_ARHGEF3_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_ENST00000477440_5end |
EntrezGene: | ARHGEF3 |
HGNC: | 683 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.60e-10 | 253 |
epithelial cell of pancreas | 3.93e-09 | 4 |
endodermal cell | 4.87e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 1.10e-10 | 101 |
digestive system | 7.35e-09 | 145 |
digestive tract | 7.35e-09 | 145 |
primitive gut | 7.35e-09 | 145 |
male reproductive organ | 2.39e-08 | 11 |
epithelium of foregut-midgut junction | 7.09e-08 | 25 |
anatomical boundary | 7.09e-08 | 25 |
hepatobiliary system | 7.09e-08 | 25 |
foregut-midgut junction | 7.09e-08 | 25 |
septum transversum | 7.09e-08 | 25 |
endoderm-derived structure | 8.06e-08 | 160 |
endoderm | 8.06e-08 | 160 |
presumptive endoderm | 8.06e-08 | 160 |
viscus | 1.00e-07 | 18 |
abdomen element | 1.44e-07 | 54 |
abdominal segment element | 1.44e-07 | 54 |
body cavity | 1.45e-07 | 46 |
anatomical cavity | 1.97e-07 | 61 |
subdivision of digestive tract | 3.30e-07 | 118 |
male genital duct | 6.75e-07 | 3 |
internal male genitalia | 6.75e-07 | 3 |
gallbladder | 6.89e-07 | 3 |
gall bladder primordium | 6.89e-07 | 3 |
body cavity precursor | 7.15e-07 | 54 |
body cavity or lining | 7.22e-07 | 49 |
endo-epithelium | 8.77e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.66e-31 | 106 |
cell type cancer | 6.31e-21 | 143 |
squamous cell carcinoma | 1.70e-15 | 14 |
disease of cellular proliferation | 2.93e-10 | 239 |
cancer | 3.53e-10 | 235 |
pancreatic cancer | 3.93e-09 | 4 |
endocrine gland cancer | 5.95e-09 | 6 |
adenocarcinoma | 2.30e-08 | 25 |