FFCP PHASE1:Hg19::chr3:53528204..53528230,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=776 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1391 | |||
|TSSclassifier=weak | |||
|UniProt=Q01668 | |||
|association_with_transcript=-452bp_to_ENST00000350061_5end | |||
|description=CAGE_peak_3_at_CACNA1D_5end | |||
|id=chr3:53528204..53528230,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002563;6.78e-12;4!CL:0002253;4.96e-11;2!CL:0002178;5.99e-08;3!CL:0000167;6.40e-07;1!CL:0000164;6.40e-07;1!CL:0000502;6.40e-07;1!CL:0000172;6.40e-07;1!CL:0000173;6.40e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.56e-12,4;CL:0002253,2.97e-11,2;CL:0002178,5.80e-08,3;CL:0000167,6.23e-07,1;CL:0000164,6.23e-07,1;CL:0000502,6.23e-07,1;CL:0000172,6.23e-07,1;CL:0000173,6.23e-07,1;CL:0002351,6.23e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0008425;5.57e-07;1!UBERON:0006595;5.79e-07;86!CL:0002351;6.40e-07;1 | |||
|ontology_enrichment_disease=DOID:305!5.96e-11!106;DOID:0050687!3.23e-08!143;DOID:299!5.24e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;6.95e-12;25!DOID:4362;4.37e-10;5!DOID:3119;4.18e-09;14!DOID:4430;6.40e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:299,6.81e-12,25;DOID:305,2.71e-10,106;DOID:4362,3.21e-10,5;DOID:3119,3.48e-09,14;DOID:0050687,9.25e-08,143;DOID:4430,6.23e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.51e-13!115;UBERON:0004921!2.80e-11!129;UBERON:0004185!2.80e-11!129;UBERON:0005409!3.12e-11!35;UBERON:0004119!4.21e-11!169;UBERON:0000925!4.21e-11!169;UBERON:0006595!4.21e-11!169;UBERON:0001007!4.67e-11!155;UBERON:0001555!4.67e-11!155;UBERON:0007026!4.67e-11!155;UBERON:0000160!5.86e-09!27;UBERON:0000059!3.58e-08!11;UBERON:0001155!1.42e-07!9;UBERON:0000002!1.53e-07!6;UBERON:0001560!1.53e-07!6;UBERON:0000481!8.35e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.36e-35;22!UBERON:0000160;1.69e-32;17!UBERON:0004921;4.08e-28;33!UBERON:0000059;1.10e-21;11!UBERON:0001155;1.45e-19;9!UBERON:0004907;1.50e-16;5!UBERON:0001052;3.90e-12;4!UBERON:0001242;6.78e-12;4!UBERON:0001262;6.78e-12;4!UBERON:0004786;6.78e-12;4!UBERON:0004808;6.78e-12;4!UBERON:0001277;6.78e-12;4!UBERON:0000007;1.24e-11;2!UBERON:0002108;2.00e-10;4!UBERON:0001555;2.44e-10;54!UBERON:0000002;1.77e-08;6!UBERON:0001560;1.77e-08;6!UBERON:0001007;1.65e-07;81!UBERON:0000485;5.39e-07;7!UBERON:0003929;5.39e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.25e-33,17;UBERON:0005409,3.90e-31,25;UBERON:0000059,4.21e-22,11;UBERON:0001155,5.70e-20,9;UBERON:0004907,1.36e-16,5;UBERON:0004921,4.84e-16,118;UBERON:0001007,1.38e-13,145;UBERON:0001555,1.38e-13,145;UBERON:0007026,1.38e-13,145;UBERON:0001052,2.46e-12,4;UBERON:0001242,4.56e-12,4;UBERON:0001262,4.56e-12,4;UBERON:0004786,4.56e-12,4;UBERON:0004808,4.56e-12,4;UBERON:0001277,4.56e-12,4;UBERON:0004119,7.47e-12,160;UBERON:0000925,7.47e-12,160;UBERON:0006595,7.47e-12,160;UBERON:0000007,8.83e-12,2;UBERON:0002108,2.21e-10,4;UBERON:0011216,9.51e-09,223;UBERON:0000002,1.38e-08,6;UBERON:0001560,1.38e-08,6;UBERON:0001831,9.67e-07,1;UBERON:0001567,9.67e-07,1;UBERON:0008801,9.67e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.487894824518382,0.397589304964456,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0,1.59884970106048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32945394550784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49712432326576,0,0,0,0,0,0,0,0,0,0,0,0.844501632511974,0.19924798825107,1.10513566212459,2.51932747854276,0,0,0,0,3.9384658428634,0,0,0,0,0,0,0,2.08342208868187,7.78393999966142,0.724999575434793,0.1137934482855,1.01701460117107,0.236387681767936,0,0,0,0,0.120596438625408,0,0.774054819518572,0,0,1.85195387982283,0,0.153900517007594,0,0.69169171316418,0,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,1.63232808159148,1.69623685720729,1.73110911793673,1.99052386215701,1.85760885457012,1.83309043480088,0,0,0,0,0,0,0,0.391329237864179,0,0,1.20990716048664,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0.52418000472609,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.0633107959558787,0,0,2.34798294213288,0,3.74635084600676,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0.0984274815147488,0,0,0.136203406111576,0.482259445395058,0.137539436597234,0,0,0,0,0,1.65491985328316,0.996637174564964,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0.427149650270779,0,0,0,0,0,0,0,0,0,0,2.04170325125305,0,0.122026264901963,0.250381861413,0,0,0,0,0,0,0,0,0.468334905806882,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0,0.0642292250964595,0,0,0,0.252071696221718,0.0691572524642179,0,0,0,0.235939446695481,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,2.74128883428591,0,0,0.383287282918786,0,0,1.82089681270989,5.23623040107984,0,0,0,0.271878931907327,0.0657727735628491,0,0,0.863424021355654,0,0,2.73947616152849,0,0,0.428859265059938,0.158013611732727,0,0,0,0,0,0,1.29068207646083,0,0,0.423387050190929,1.14553434272025,0,0,0.671132590786754,1.57040373784389,0.365753774946808,0,0,0,0,3.50909195193158,0.994753875806841,0,0.33883824611688,0,3.01925687133347,3.24131464053368,4.15263164957519,3.29222107453066,0,4.47785439493089,0,0,0,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0,0,2.1161073620616,0,0,0,0,0,0,0.101988829741982,0.26721740526556,0.18378979906969,0,0.378893491091197,0,0,0,0.426467963801962,0.476128862927481,0,0,0,0.636471582781649,0.808468755832877,0.217716747896961,0,0.404112318087525,1.2192774916755,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@CACNA1D | |||
}} |
Revision as of 19:16, 21 January 2014
Short description: | p3@CACNA1D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CACNA1D_5end |
Coexpression cluster: | NA |
Association with transcript: | -452bp_to_ENST00000350061_5end |
EntrezGene: | CACNA1D |
HGNC: | 1391 |
UniProt: | Q01668 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.56e-12 | 4 |
epithelial cell of large intestine | 2.97e-11 | 2 |
epithelial cell of stomach | 5.80e-08 | 3 |
peptide hormone secreting cell | 6.23e-07 | 1 |
enteroendocrine cell | 6.23e-07 | 1 |
type D enteroendocrine cell | 6.23e-07 | 1 |
somatostatin secreting cell | 6.23e-07 | 1 |
pancreatic D cell | 6.23e-07 | 1 |
progenitor cell of endocrine pancreas | 6.23e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.25e-33 | 17 |
gastrointestinal system | 3.90e-31 | 25 |
large intestine | 4.21e-22 | 11 |
colon | 5.70e-20 | 9 |
lower digestive tract | 1.36e-16 | 5 |
subdivision of digestive tract | 4.84e-16 | 118 |
digestive system | 1.38e-13 | 145 |
digestive tract | 1.38e-13 | 145 |
primitive gut | 1.38e-13 | 145 |
rectum | 2.46e-12 | 4 |
intestinal mucosa | 4.56e-12 | 4 |
wall of intestine | 4.56e-12 | 4 |
gastrointestinal system mucosa | 4.56e-12 | 4 |
gastrointestinal system epithelium | 4.56e-12 | 4 |
intestinal epithelium | 4.56e-12 | 4 |
endoderm-derived structure | 7.47e-12 | 160 |
endoderm | 7.47e-12 | 160 |
presumptive endoderm | 7.47e-12 | 160 |
pituitary gland | 8.83e-12 | 2 |
small intestine | 2.21e-10 | 4 |
organ system subdivision | 9.51e-09 | 223 |
uterine cervix | 1.38e-08 | 6 |
neck of organ | 1.38e-08 | 6 |
parotid gland | 9.67e-07 | 1 |
cheek | 9.67e-07 | 1 |
parotid gland primordium | 9.67e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 6.81e-12 | 25 |
carcinoma | 2.71e-10 | 106 |
cervical cancer | 3.21e-10 | 5 |
gastrointestinal system cancer | 3.48e-09 | 14 |
cell type cancer | 9.25e-08 | 143 |
somatostatinoma | 6.23e-07 | 1 |