FFCP PHASE1:Hg19::chr13:30951150..30951161,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42761 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-49bp_to_ENST00000416261_5end | |||
|coexpression_cluster_id=C900 | |||
|description=CAGE_peak_5_at_LINC00426_5end | |||
|id=chr13:30951150..30951161,- | |||
|ontology_enrichment_celltype=CL:0000542!1.09e-44!53;CL:0000051!1.09e-44!53;CL:0000838!1.72e-42!52;CL:0000084!2.70e-32!25;CL:0000827!2.70e-32!25;CL:0000791!4.62e-24!18;CL:0000789!4.62e-24!18;CL:0002420!4.62e-24!18;CL:0002419!4.62e-24!18;CL:0000790!4.62e-24!18;CL:0002087!2.04e-21!119;CL:0000037!1.14e-20!172;CL:0000566!1.14e-20!172;CL:0000738!1.19e-20!140;CL:0000988!6.51e-19!182;CL:0002032!3.13e-18!165;CL:0000837!3.13e-18!165;CL:0002031!1.76e-17!124;CL:0000624!5.67e-17!6;CL:0000945!3.78e-13!24;CL:0000826!3.78e-13!24;CL:0000625!7.19e-12!11;CL:0000898!8.72e-10!3;CL:0000817!1.55e-08!3;CL:0000815!5.88e-07!2;CL:0000792!5.88e-07!2;CL:0002677!5.88e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000898;4.59e-15;3!CL:0000895;1.07e-11;1!CL:0000084;1.58e-10;25!CL:0000791;1.32e-09;18!CL:0000789;1.32e-09;18!CL:0002419;1.32e-09;18!CL:0000624;5.54e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000898,3.22e-15,3;CL:0000810,6.26e-12,1;CL:0000895,6.26e-12,1;CL:0002436,6.26e-12,1;CL:0002427,6.26e-12,1;CL:0002428,6.26e-12,1;CL:0002429,6.26e-12,1;CL:0002433,6.26e-12,1;CL:0002431,6.26e-12,1;CL:0002432,6.26e-12,1;CL:0000084,1.35e-10,25;CL:0000827,1.35e-10,25;CL:0000791,1.09e-09,18;CL:0000789,1.09e-09,18;CL:0002420,1.09e-09,18;CL:0002419,1.09e-09,18;CL:0000790,1.09e-09,18;CL:0000624,4.66e-08,6;CL:0000838,6.00e-07,52;CL:0000542,8.27e-07,53;CL:0000051,8.27e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002427;1.07e-11;1!CL:0000790;1.32e-09;18 | |||
|ontology_enrichment_disease=DOID:0060058!5.03e-12!10;DOID:2531!3.70e-11!51;DOID:0060083!3.70e-11!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!8.73e-08!4;UBERON:0005058!8.73e-08!4;UBERON:0009113!8.73e-08!4;UBERON:0003295!8.73e-08!4;UBERON:0005562!8.73e-08!4;UBERON:0004177!4.22e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.49e-22;2!UBERON:0005058;1.49e-22;2!UBERON:0009113;1.49e-22;2!UBERON:0002372;1.07e-11;1!UBERON:0001961;1.07e-11;1!UBERON:0001744;1.07e-11;1!UBERON:0001042;1.07e-11;1!UBERON:0001735;1.07e-11;1!UBERON:0004177;1.36e-09;5!UBERON:0005057;1.36e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,9.36e-25,4;UBERON:0005058,9.36e-25,4;UBERON:0009113,9.36e-25,4;UBERON:0003295,9.36e-25,4;UBERON:0005562,9.36e-25,4;UBERON:0001042,2.70e-17,10;UBERON:0009145,2.70e-17,10;UBERON:0003351,1.01e-16,6;UBERON:0006562,9.53e-16,11;UBERON:0004177,2.02e-14,7;UBERON:0005057,2.02e-14,7;UBERON:0002372,9.61e-12,1;UBERON:0001961,9.61e-12,1;UBERON:0001744,9.61e-12,1;UBERON:0001735,9.61e-12,1;UBERON:0000974,2.92e-10,10;UBERON:0003408,2.92e-10,10;UBERON:0009722,2.25e-09,11;UBERON:0007690,2.25e-09,11;UBERON:0001557,3.30e-09,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.157421562627358,0,0.767658796194425,0,0,0,0,0.309868802321207,0.142169232487422,0.587200878669695,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32208974556972,0.954053754535364,0,0,0,0,0,0.790152254325231,0.393419540227666,0.393010762749165,0.205601498999509,1.83905144929746,0.32592226663359,0,0,1.33692548262208,3.24066498222321,2.21533894583621,4.06205795647523,1.28091319725675,1.1705341280389,0.493313713811028,0.276350017785848,0.869409257205157,0,0,0,0.793165398882963,1.91610246800961,0.34362744548263,0.506039384039006,0.95569624297229,0,0.950452044448374,0.150575119077773,0,2.49861453104692,0.236777252044017,1.64225599384209,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0.822724546172388,1.29694662238543,1.08006287447623,0,0,0,0,0.929015875628594,0.144269212976445,0.426851060090485,0.318852545457645,0,0,0,0,0,1.59764275323235,0.156679895773023,0,0,0,0,0,0.343505344755765,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.123084805461069,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0.19998739585493,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64814530327625,5.27635071514792,0,0,0,0,0,1.34704106029175,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | |||
|short_description=p5@LINC00426 | |||
}} |
Revision as of 17:10, 11 January 2014
Short description: | p5@LINC00426 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LINC00426_5end |
Coexpression cluster: | C900_CD4_thymus_Hodgkin_CD8_CD34_chronic_CD133 |
Association with transcript: | -49bp_to_ENST00000416261_5end |
EntrezGene: | NA |
HGNC: | 42761 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
naive T cell | 3.22e-15 | 3 |
CD4-positive, alpha-beta thymocyte | 6.26e-12 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 6.26e-12 | 1 |
mature CD4 single-positive thymocyte | 6.26e-12 | 1 |
resting double-positive thymocyte | 6.26e-12 | 1 |
double-positive blast | 6.26e-12 | 1 |
CD69-positive double-positive thymocyte | 6.26e-12 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 6.26e-12 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 6.26e-12 | 1 |
CD24-positive, CD4 single-positive thymocyte | 6.26e-12 | 1 |
T cell | 1.35e-10 | 25 |
pro-T cell | 1.35e-10 | 25 |
mature alpha-beta T cell | 1.09e-09 | 18 |
alpha-beta T cell | 1.09e-09 | 18 |
immature T cell | 1.09e-09 | 18 |
mature T cell | 1.09e-09 | 18 |
immature alpha-beta T cell | 1.09e-09 | 18 |
CD4-positive, alpha-beta T cell | 4.66e-08 | 6 |
lymphoid lineage restricted progenitor cell | 6.00e-07 | 52 |
lymphocyte | 8.27e-07 | 53 |
common lymphoid progenitor | 8.27e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 9.36e-25 | 4 |
hemolymphoid system gland | 9.36e-25 | 4 |
thymic region | 9.36e-25 | 4 |
pharyngeal gland | 9.36e-25 | 4 |
thymus primordium | 9.36e-25 | 4 |
chordate pharynx | 2.70e-17 | 10 |
pharyngeal region of foregut | 2.70e-17 | 10 |
pharyngeal epithelium | 1.01e-16 | 6 |
pharynx | 9.53e-16 | 11 |
hemopoietic organ | 2.02e-14 | 7 |
immune organ | 2.02e-14 | 7 |
tonsil | 9.61e-12 | 1 |
mucosa-associated lymphoid tissue | 9.61e-12 | 1 |
lymphoid tissue | 9.61e-12 | 1 |
tonsillar ring | 9.61e-12 | 1 |
neck | 2.92e-10 | 10 |
gland of gut | 2.92e-10 | 10 |
entire pharyngeal arch endoderm | 2.25e-09 | 11 |
early pharyngeal endoderm | 2.25e-09 | 11 |
upper respiratory tract | 3.30e-09 | 19 |