FFCP PHASE1:Hg19::chr11:119999539..119999579,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z8U9 | |||
|association_with_transcript=0bp_to_ENST00000541857,uc010rzi.1,uc010rzj.1_5end | |||
|coexpression_cluster_id=C2102 | |||
|description=CAGE_peak_3_at_TRIM29_5end | |||
|id=chr11:119999539..119999579,- | |||
|ontology_enrichment_celltype=CL:0000066!1.36e-16!254;CL:0002076!1.07e-12!43;CL:0000223!1.02e-08!59;CL:0002251!1.63e-08!21;CL:0002159!3.85e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;9.39e-14;42!CL:0002251;1.81e-11;20!CL:0002159;1.15e-09;14!CL:0000622;6.29e-09;5!CL:0000349;1.41e-08;19!CL:0002368;3.13e-08;13!CL:0000150;4.67e-08;9!CL:0000154;2.68e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.52e-24,253;CL:0002076,1.72e-18,42;CL:0000223,3.30e-12,58;CL:0002251,1.55e-11,20;CL:0002159,1.25e-09,14;CL:0000622,6.36e-09,5;CL:0000349,1.41e-08,19;CL:0002368,3.82e-08,13;CL:0000150,3.95e-08,9;CL:0000154,2.70e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.94e-08;29!CL:0000223;4.36e-07;58 | |||
|ontology_enrichment_disease=DOID:305!5.19e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.61e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.45e-20!169;UBERON:0000925!7.45e-20!169;UBERON:0006595!7.45e-20!169;UBERON:0001004!7.10e-18!72;UBERON:0001007!2.46e-14!155;UBERON:0001555!2.46e-14!155;UBERON:0007026!2.46e-14!155;UBERON:0000161!5.88e-13!35;UBERON:0000077!5.10e-12!130;UBERON:0000065!9.12e-12!53;UBERON:0004921!1.81e-11!129;UBERON:0004185!1.81e-11!129;UBERON:0000062!4.14e-11!511;UBERON:0000166!2.86e-10!21;UBERON:0001737!3.50e-10!9;UBERON:0005631!4.75e-10!14;UBERON:0000158!4.75e-10!14;UBERON:0008947!2.86e-09!38;UBERON:0003258!2.86e-09!38;UBERON:0001557!3.16e-09!19;UBERON:0000064!3.30e-09!219;UBERON:0003102!1.20e-08!95;UBERON:0000072!1.26e-08!46;UBERON:0001041!2.84e-08!98;UBERON:0003124!7.65e-08!7;UBERON:0000165!2.89e-07!28;UBERON:0000930!2.89e-07!28;UBERON:0000468!5.99e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;9.11e-15;9!UBERON:0001557;9.11e-15;9!UBERON:0000065;3.87e-11;44!UBERON:0005631;1.00e-09;10!UBERON:0000158;1.00e-09;10!UBERON:0000486;1.43e-09;12!UBERON:0001004;2.16e-09;65!UBERON:0001041;6.95e-09;14!UBERON:0000072;7.54e-09;37!UBERON:0001044;8.68e-09;6!UBERON:0003293;8.68e-09;6!UBERON:0003294;8.68e-09;6!UBERON:0010047;8.68e-09;6!UBERON:0003408;8.68e-09;6!UBERON:0000167;8.68e-09;6!UBERON:0000478;9.92e-09;24!UBERON:0000161;1.27e-08;19!UBERON:0000166;1.27e-08;19!UBERON:0000165;3.05e-08;28!UBERON:0001987;2.51e-07;4!UBERON:0000365;3.01e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.27e-21,160;UBERON:0000925,7.27e-21,160;UBERON:0006595,7.27e-21,160;UBERON:0001004,1.38e-19,74;UBERON:0005631,3.35e-15,14;UBERON:0000158,3.35e-15,14;UBERON:0001737,9.39e-15,9;UBERON:0000065,4.31e-14,54;UBERON:0001007,1.23e-13,145;UBERON:0001555,1.23e-13,145;UBERON:0007026,1.23e-13,145;UBERON:0001041,3.08e-12,87;UBERON:0001557,1.08e-11,19;UBERON:0008947,1.35e-11,38;UBERON:0003258,1.35e-11,38;UBERON:0004921,2.86e-11,118;UBERON:0003124,3.53e-11,7;UBERON:0000072,1.48e-10,47;UBERON:0000166,5.44e-10,22;UBERON:0000161,2.57e-09,36;UBERON:0001044,9.34e-09,6;UBERON:0003293,9.34e-09,6;UBERON:0003294,9.34e-09,6;UBERON:0010047,9.34e-09,6;UBERON:0000167,9.34e-09,6;UBERON:0000478,9.71e-09,24;UBERON:0000165,7.36e-08,29;UBERON:0000930,7.36e-08,29;UBERON:0004175,9.26e-08,25;UBERON:0003100,2.06e-07,41;UBERON:0001987,2.36e-07,4;UBERON:0004340,2.36e-07,4;UBERON:0000365,3.13e-07,5;UBERON:0005795,5.65e-07,22;UBERON:0003975,7.75e-07,22;UBERON:0003102,9.57e-07,99 | |||
|phase1_expression=0,0,0.140954404095971,0,0,2.61701557230111,0,0,0,0,0.697801167972428,18.3490752589345,14.2434168243365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,3.67768489791571,3.31326510656075,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.42158728576849,0.50133791063589,5.21447468258965,0,1.45990461090791,0,0,0,0.523916301990851,21.49342200926,12.2358866118862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.082821564276,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0.717558542755448,0.85422955527427,0,0,0,0.515281080091258,1.48893485065272,0.168776332241266,0.194874010322397,0,0.184099797284599,0,0,0.201504196455281,0.339121184620975,4.63826047591912,5.72766853240753,4.87567812161307,0,0,0,0,0,0,0,0,0,0,0,27.3288708092039,22.2531790903094,21.4499816596299,24.5955559193238,21.7879444092406,18.2698376715544,28.3145747136345,24.3314616755429,15.3898862778556,0,0,0.4115740113314,0,0,0,0,0,2.09080345523293,0,19.3160502319181,11.240175325762,4.12168786887686,7.59225250299943,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3107217385455,10.0789276919316,5.38745369521069,13.7024539735358,7.55648240136301,6.9008882249738,0,0,0.829312462163088,0.144119953416961,1.00993946741104,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.499864955910285,0,0,0,0,0,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,1.20378439891088,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,29.1002468588409,49.9306318531491,40.5202993061772,0.248107807818777,0.153461973288062,0.841980283299221,0.384417447767103,0,0.160853921143607,1.48418066444991,0,0.177561725313127,0,0,0,0.120859449591622,5.21316822788541,8.01104603742298,0.803701137152247,0,0.262248829918848,0.451199612907412,0.15403067420883,0,1.46139224653261,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,17.8022316778813,16.9015663969496,0,0,0,0,0,0.107420244868274,0,0,0,4.29740779938543,2.11409074101617,1.02090169995667,2.4277867405332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.424216295861138,0,0,0,0,0,0,0,0,0,0,0.491245205065606,0,0,1.89996871767898,1.97576935775941,0,0,5.86954887625624,4.69211592875051,4.3556393944529,1.03558180854457,8.6101074534246,11.7930032967338,15.9634855273203,3.67557440331135,0,0,0,0,0,0,0,0,0,0,7.59624669541198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0.439524537815682,0,0,0,71.1458564518316,12.1755519141382,130.850459094273,0,0,0,0,0,2.39097585901284,0,0,0.306806047506464,0,0.311039587661807,0,4.47552936689023,0,0.887790650732402,0,0,0,0.278304294485554,0,0.520855522170466,2.79871999987826,0,3.18621655199399,0,13.0013224972365,0,0,0,0.885741385813839,0.120596438625408,1.52581736317083,0,0,0,3.2681539055697,50.0531241960186,7.00247352384553,0.113942055847001,0,0,0,29.9861090148004,2.38153742844842,22.9204953688013,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0.611030144933625,0,0,0,0.404406797884062,0,0,0,8.60924323301195,0,0,0,0,1.26373159256976,0,0,0,0,0,0,0,2.77349346026277,3.99187398170801,4.11568069140386,1.48000651186684,1.92199335066233,0,5.80537987734511,6.28568126941196,6.73346747836316,14.1603964073092,0,0.451961481561065,0,0,0.0633107959558787,15.4485592360494,0.240476460754601,1.70762395791482,5.99428828746391,0,0,0,0,0,10.370537523139,2.17446729717782,1.35983700206033,0,0,0,0,0,0,0,0.558564802544508,0.687481272035051,0,14.9759250374243,0,0,0.201550417460179,0,0,0.0787831823072236,0,0.0674035438541849,0,0,0,0.136203406111576,0,0,0,0.449947783103001,11.6070293183692,0.121499113316049,4.69608562638973,0.157611414598396,0.0524545881349981,0,0,0.575745591958336,0.714695326373367,0,0,0.542999601753713,0,0,0,0,0,1.01980882368113,0,0,0.258565912723101,0,1.71086837884329,1.40963004463334,1.70859860108311,1.25763444079733,0.828478110694391,0,0,0,8.29843635101236,0,0,0.306345576763462,0,0.785270481251171,0,0,0,1.14681839138014,1.33114861844223,0.620964029413834,0,1.24980407962107,0,0,0,0,0.579684114443301,0.298509605773748,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,1.22061219961398,0,0.107410557042488,0,0,0,0.343395705182793,0,0,1.92619830407303,7.5054556981224,0.260994291965212,0,0,0,0.179088841081487,5.5584260488975,4.82424909073156,0,0.38582807654183,0,0,3.79973375904318,0.303859956177382,0,0,0,0,0,0,1.47918486351039,0,0,0,0,0,4.19638523158333,6.22077260032973,0,0,0,0,0.33946505990805,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.138314504928436,0.161475645631851,0,4.90738592505128,0.707818340086442,11.3725731083441,0.346576998451015,3.4324388592045,0,0,0.902523940191087,0.20170506870352,0,0,16.7047355860299,1.77427303460454,0.0675375846183947,0,0,0,0,2.19303106742873,6.94695649745012,0.351742488719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| |||
|short_description=p3@TRIM29 | |||
}} |
Revision as of 10:48, 11 January 2014
Short description: | p3@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRIM29_5end |
Coexpression cluster: | C2102_amniotic_cervical_Placental_chorionic_Hep2_salivary_Corneal |
Association with transcript: | 0bp_to_ENST00000541857, uc010rzi.1, uc010rzj.1_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | B7Z8U9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.52e-24 | 253 |
endo-epithelial cell | 1.72e-18 | 42 |
endodermal cell | 3.30e-12 | 58 |
epithelial cell of alimentary canal | 1.55e-11 | 20 |
general ecto-epithelial cell | 1.25e-09 | 14 |
acinar cell | 6.36e-09 | 5 |
extraembryonic cell | 1.41e-08 | 19 |
respiratory epithelial cell | 3.82e-08 | 13 |
glandular epithelial cell | 3.95e-08 | 9 |
protein secreting cell | 2.70e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.27e-21 | 160 |
endoderm | 7.27e-21 | 160 |
presumptive endoderm | 7.27e-21 | 160 |
respiratory system | 1.38e-19 | 74 |
extraembryonic membrane | 3.35e-15 | 14 |
membranous layer | 3.35e-15 | 14 |
larynx | 9.39e-15 | 9 |
respiratory tract | 4.31e-14 | 54 |
digestive system | 1.23e-13 | 145 |
digestive tract | 1.23e-13 | 145 |
primitive gut | 1.23e-13 | 145 |
foregut | 3.08e-12 | 87 |
upper respiratory tract | 1.08e-11 | 19 |
respiratory primordium | 1.35e-11 | 38 |
endoderm of foregut | 1.35e-11 | 38 |
subdivision of digestive tract | 2.86e-11 | 118 |
chorion | 3.53e-11 | 7 |
segment of respiratory tract | 1.48e-10 | 47 |
oral opening | 5.44e-10 | 22 |
orifice | 2.57e-09 | 36 |
saliva-secreting gland | 9.34e-09 | 6 |
gland of oral region | 9.34e-09 | 6 |
gland of foregut | 9.34e-09 | 6 |
oral gland | 9.34e-09 | 6 |
oral cavity | 9.34e-09 | 6 |
extraembryonic structure | 9.71e-09 | 24 |
mouth | 7.36e-08 | 29 |
stomodeum | 7.36e-08 | 29 |
internal genitalia | 9.26e-08 | 25 |
female organism | 2.06e-07 | 41 |
placenta | 2.36e-07 | 4 |
allantois | 2.36e-07 | 4 |
urothelium | 3.13e-07 | 5 |
embryonic uterus | 5.65e-07 | 22 |
internal female genitalia | 7.75e-07 | 22 |
surface structure | 9.57e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.61e-09 | 106 |