MCL coexpression mm9:1543: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0.0134795900873983,0,0,0,0,0.0537197987474336,0.0339720761992606,0,0,0.0249731817189904,0.0572414175627877,0.0460673962245798,0,0,0,0.0136435996921853,0,0,0,0.0179392974753741,0,0,0.0169489369166406,0.0151111016634793,0,0,0,0,0,0.0220405843345282,0.0133571877744951,0.0161375142145691,0,0,0,0,0,0,0,0.0230642299533584,0,0,0,0.0172496207843942,0,0.0304551771451622,0,0,0,0,0,0.0663313572550808,0.0361210508241096,0,0.036880984634598,0,0,0,0.0322705967929012,0.0597211205314168,0,0.0227619479210974,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0076037647116125,0,0,0,0,0,0,0,0.0177815532406058,0.0063278620475563,0,0.414198905632428,0.249287033306476,0.465166681354436,0.631990691586899,0.506548287899718,0.232467851321823,0.0807569654542266,0.0500526677256706,0.026281356338376,0,0,0,0,0,0,0,0.205711826254329,0,0,0,0.023086518062959,0.0180244759794956,0.012194131590756,0.00965640094523602,0.0400385029943536,0.0191868699727828,0.08279800733154,0,0.0260475920338031,0.017331858075575,0,0,0,0.0165173472643813,0,0,0,0.0103901955038261,0,0,0,0,0,0,0,0,0.0101847058588194,0,0.030511707154542,0,0,0,0,0,0,0,0.0199846790430858,0,0,0,0.0172146867659031,0,0,0,0,0,0.0559561777009181,0,0,0.0183000524034538,0,0,0.0402954128175414,0.0124612644033474,0,0.0206425768795302,0,0.0132323626049244,0.013203091508521,0.0067706674964915,0.0118520798714393,0,0,0,0,0.0247976735334282,0,0,0,0,0,0,0,0,0,0.0194747328949653,0.0157606832760691,0.0154709706802017,0.0556967324361394,0,0.0157740702445469,0.0150851487637871,0,0,0,0,0.0114016645839357,0.00532597846255668,0,0,0.019158963566673,0.500791990142696,0,0,0.0176174402379168,0.0295797797687402,0.0341904046441628,0.0394056928023968,0.157176037151828,0.289229276807895,1.00711835743405,0.555985956244838,0.510468752230324,0.461677253841902,0.577216673192492,0.582354186885023,0.640464439934705,0,0,0,0.0136182458700521,0,0.0134518433834191,0.0370943815123899,0,0,0,0,0.013180395865124,0,0,0,0,0.0347400403625538,0,0,0,0.0519987526580424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0399313895767669,0,0,0,0.062527956630613,0,0,0,0,0,0,0,0,0,0,0.0594183969122306,0,0.0132567040197682,0,0,0.00979491454394344,0,0,0,0.013701801072748,0,0.0147579274919735,0.0149902231516349,0.0111287309194428,0.0178946976761341,0,0.0214354049334312,0.0112437142554111,0.0582147169673092,0,0,0,0,0.0171553092198588,0.160725008969851,0.138991429107665,0,0.0200210086766564,0,0,0,0,0,0,0,0,0.0106313975787212,0,0,0,0,0,0,0,0,0,0,0,0,0.0063791468978576,0,0,0,0.00960106190167404,0.074596469921859,0,0,0,0,0.0276835905616708,0.0146080808550889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0189016826300935,0,0,0.0552457897410102,0.0162719864271808,0.0241752511986906,0.0490083015268724,0.0196234332723016,0.0278027254030464,0.0077749969694221,0.0263217657517517,0.0274077113351082,0.0338345527732368,0.038095341912391,0.030642958171656,0.02997222335309,0.0224135559277854,0.0256067459839642,0.0141903984706849,0.0185747269211186,0.0221645797173144,0.0433755971941005,0.0332286207253078,0.0145916603480351,0.0505322213353838,0.0110606874701786,0,0,0.0163207333481288,0.0817372904392906,0.0359575303145864,0.0153212890822472,0,0.0333371175305548,0.077024826147024,0.0304067552635962,0.0173140624994805,0|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434704241352084,0.225301871178984,0.499523884574521,0.690077164971779,0.44593214273782,0.327063587524422,0,0,0,0,0,0,0,0,0,0,0.255100480297832,0,0,0,0,0,0,0,0.0514097768499148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56443804640041,0,0,0,0,0,0,0,0.121976689400977,0.965523533501961,0.58831251521849,0.395948777723257,0.458218615059025,0.514973856255353,0.709790506319026,0.686595891483703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187367671491058,0.150224303855383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0,0,0.0476191773904887,0,0,0,0,0,0,0,0.0390607415003592,0,0,0,0,0,0,0,0,0,0,0,0,0.0845301845292944,0,0,0|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=CL:0000181!3.79e-13!5;CL:0000417!3.79e-13!5;CL:0000668!3.79e-13!5;CL:0000412!3.79e-13!5;CL:0000182!3.79e-13!5|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002107!8.03e-34!22;UBERON:0007499!8.03e-34!22;UBERON:0006925!8.03e-34!22;UBERON:0009497!8.03e-34!22;UBERON:0000015!8.03e-34!22;UBERON:0002423!8.03e-34!22;UBERON:0006235!8.03e-34!22;UBERON:0008835!8.03e-34!22;UBERON:0003894!8.03e-34!22;UBERON:0004161!8.03e-34!22;UBERON:0008836!8.03e-34!22;UBERON:0009854!3.04e-32!23;UBERON:0009856!3.04e-32!23;UBERON:0002365!1.82e-29!25;UBERON:0002330!1.82e-29!25;UBERON:0005256!1.52e-17!45;UBERON:0005172!6.90e-16!49;UBERON:0005173!6.90e-16!49;UBERON:0002417!6.90e-16!49;UBERON:0000916!6.90e-16!49;UBERON:0003914!1.75e-14!47;UBERON:0002368!1.81e-12!60;UBERON:0003104!3.21e-12!61;UBERON:0009142!3.21e-12!61;UBERON:0003929!5.32e-12!55;UBERON:0002530!2.69e-11!65;UBERON:0009569!4.40e-11!66;UBERON:0001041!4.91e-10!80;UBERON:0000949!6.29e-10!72;UBERON:0000490!1.44e-09!66;UBERON:0005911!4.87e-09!69;UBERON:0005177!8.41e-09!79;UBERON:0000466!1.45e-07!79;UBERON:0002100!2.19e-07!90|tfbs_overrepresentation_for_novel_motifs=0.557864,0.087078,0.529553,0.603273,0.406364,0.618805,0.715644,0.300268,0.310789,0.370407,0.668936,0.702872,0.300533,0.728641,1.0876,0,0.930881,1.02841,0.775038,0.185796,1.22707,0.874994,0.727684,1.04384,0.537749,0.757752,0.754069,0.641282,0.456327,0.645258,0.626183,1.03545,0.395107,0.253145,0.425309,0.0566307,0.384813,0.699032,0.360612,0.328675,0.401916,0.631725,0.134724,0.426986,0.0637209,0.591277,0.847828,0.658142,0.746467,0.459555,0.912738,0.786094,0.220111,1.18062,1.19842,0.73621,0.469329,0.689304,0.26467,0.734051,1.01481,0.796017,1.5593,0.901018,0.747985,0.943088,1.33705,1.68977,1.00999,1.54147,0.509047,0.30684,0.152094,1.23259,0.257421,0.686172,0.253065,1.95065,0.997094,0.494135,0.830212,0.948899,0.794502,0.293164,1.1148,0.0793594,0.0882907,1.20595,0.852952,1.85284,1.40768,1.11989,1.04863,0.412897,0.937248,0.3366,0.297538,1.05152,0.848095,0.20438,1.7727,2.35758,1.16282,0.913356,0.91226,0.631253,0.97421,1.5739,1.24825,0.491483,0.550229,1.16464,0.495367,0.674448,1.41481,0.399936,0.0998646,0.607321,0.932233,0.380707,1.23809,0.879184,0.759676,0.834976,1.46955,1.00091,0.724289,1.04166,1.33551,0.416189,1.14546,0.595426,1.3055,1.77493,1.43666,0.44142,1.39156,0.633235,1.3869,2.2222,1.82084,1.34183,0.772375,1.04623,0.905521,0.632211,0.851091,2.18247,0.569503,0.408309,0.230371,0.133815,1.18223,0.343194,0.749664,1.26545,0.787153,0.438007,1.36673,0.566652,1.39653,1.11392,1.00137,0.547782,0.90208,0.741834,0.383572,0.701187,0.0513167|tfbs_overrepresentation_jaspar=MA0003.1;0.211284,MA0004.1;0.603793,MA0006.1;0.419915,MA0007.1;0.587678,MA0009.1;1.06266,MA0014.1;0.0502051,MA0017.1;1.14026,MA0019.1;2.02888,MA0024.1;1.01759,MA0025.1;1.30092,MA0027.1;2.72141,MA0028.1;0.43138,MA0029.1;0.995171,MA0030.1;1.00195,MA0031.1;0.965177,MA0038.1;0.757669,MA0040.1;1.07552,MA0041.1;0.522007,MA0042.1;0.507715,MA0043.1;1.1618,MA0046.1;1.09955,MA0048.1;0.205696,MA0050.1;0.645342,MA0051.1;0.767098,MA0052.1;1.08379,MA0055.1;0.602741,MA0056.1;0,MA0057.1;0.192781,MA0058.1;1.25013,MA0059.1;1.27866,MA0060.1;0.330907,MA0061.1;0.364227,MA0063.1;0,MA0066.1;0.746072,MA0067.1;1.41352,MA0068.1;0.197245,MA0069.1;1.08414,MA0070.1;1.07418,MA0071.1;1.55428,MA0072.1;1.06547,MA0073.1;0.000589538,MA0074.1;0.708108,MA0076.1;0.470037,MA0077.1;1.04318,MA0078.1;0.801834,MA0081.1;0.53877,MA0083.1;1.16099,MA0084.1;1.74401,MA0087.1;1.11687,MA0088.1;0.888325,MA0089.1;0,MA0090.1;0.566938,MA0091.1;0.617887,MA0092.1;0.567278,MA0093.1;1.12162,MA0095.1;0,MA0098.1;0,MA0100.1;0.695835,MA0101.1;0.523409,MA0103.1;0.460936,MA0105.1;0.248108,MA0106.1;0.809991,MA0107.1;0.454197,MA0108.2;0.897859,MA0109.1;0,MA0111.1;0.582193,MA0113.1;0.780358,MA0114.1;2.55088,MA0115.1;2.6202,MA0116.1;0.419688,MA0117.1;1.13165,MA0119.1;0.524046,MA0122.1;1.15196,MA0124.1;1.35963,MA0125.1;1.28445,MA0130.1;0,MA0131.1;0.869325,MA0132.1;0,MA0133.1;0,MA0135.1;1.19898,MA0136.1;0.729175,MA0139.1;0.295945,MA0140.1;0.695713,MA0141.1;3.11252,MA0142.1;0.950155,MA0143.1;0.797553,MA0144.1;0.956957,MA0145.1;0.157686,MA0146.1;0.21827,MA0147.1;0.986917,MA0148.1;0.621195,MA0149.1;0.529387,MA0062.2;0.254018,MA0035.2;0.700704,MA0039.2;0.0511423,MA0138.2;0.861035,MA0002.2;0.809945,MA0137.2;0.479301,MA0104.2;1.52809,MA0047.2;0.75686,MA0112.2;0.927461,MA0065.2;0.929207,MA0150.1;1.43499,MA0151.1;0,MA0152.1;0.756973,MA0153.1;1.21594,MA0154.1;0.203217,MA0155.1;0.515751,MA0156.1;0.469089,MA0157.1;0.91689,MA0158.1;0,MA0159.1;1.01146,MA0160.1;1.51238,MA0161.1;0,MA0162.1;0.245828,MA0163.1;0.0644585,MA0164.1;1.7313,MA0080.2;0.455167,MA0018.2;0.739807,MA0099.2;0.854449,MA0079.2;0.000313198,MA0102.2;1.79669,MA0258.1;0.91616,MA0259.1;0.960816,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0.0134795900873983,0,0,0,0,0.0537197987474336,0.0339720761992606,0,0,0.0249731817189904,0.0572414175627877,0.0460673962245798,0,0,0,0.0136435996921853,0,0,0,0.0179392974753741,0,0,0.0169489369166406,0.0151111016634793,0,0,0,0,0,0.0220405843345282,0.0133571877744951,0.0161375142145691,0,0,0,0,0,0,0,0.0230642299533584,0,0,0,0.0172496207843942,0,0.0304551771451622,0,0,0,0,0,0.0663313572550808,0.0361210508241096,0,0.036880984634598,0,0,0,0.0322705967929012,0.0597211205314168,0,0.0227619479210974,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0076037647116125,0,0,0,0,0,0,0,0.0177815532406058,0.0063278620475563,0,0.414198905632428,0.249287033306476,0.465166681354436,0.631990691586899,0.506548287899718,0.232467851321823,0.0807569654542266,0.0500526677256706,0.026281356338376,0,0,0,0,0,0,0,0.205711826254329,0,0,0,0.023086518062959,0.0180244759794956,0.012194131590756,0.00965640094523602,0.0400385029943536,0.0191868699727828,0.08279800733154,0,0.0260475920338031,0.017331858075575,0,0,0,0.0165173472643813,0,0,0,0.0103901955038261,0,0,0,0,0,0,0,0,0.0101847058588194,0,0.030511707154542,0,0,0,0,0,0,0,0.0199846790430858,0,0,0,0.0172146867659031,0,0,0,0,0,0.0559561777009181,0,0,0.0183000524034538,0,0,0.0402954128175414,0.0124612644033474,0,0.0206425768795302,0,0.0132323626049244,0.013203091508521,0.0067706674964915,0.0118520798714393,0,0,0,0,0.0247976735334282,0,0,0,0,0,0,0,0,0,0.0194747328949653,0.0157606832760691,0.0154709706802017,0.0556967324361394,0,0.0157740702445469,0.0150851487637871,0,0,0,0,0.0114016645839357,0.00532597846255668,0,0,0.019158963566673,0.500791990142696,0,0,0.0176174402379168,0.0295797797687402,0.0341904046441628,0.0394056928023968,0.157176037151828,0.289229276807895,1.00711835743405,0.555985956244838,0.510468752230324,0.461677253841902,0.577216673192492,0.582354186885023,0.640464439934705,0,0,0,0.0136182458700521,0,0.0134518433834191,0.0370943815123899,0,0,0,0,0.013180395865124,0,0,0,0,0.0347400403625538,0,0,0,0.0519987526580424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0399313895767669,0,0,0,0.062527956630613,0,0,0,0,0,0,0,0,0,0,0.0594183969122306,0,0.0132567040197682,0,0,0.00979491454394344,0,0,0,0.013701801072748,0,0.0147579274919735,0.0149902231516349,0.0111287309194428,0.0178946976761341,0,0.0214354049334312,0.0112437142554111,0.0582147169673092,0,0,0,0,0.0171553092198588,0.160725008969851,0.138991429107665,0,0.0200210086766564,0,0,0,0,0,0,0,0,0.0106313975787212,0,0,0,0,0,0,0,0,0,0,0,0,0.0063791468978576,0,0,0,0.00960106190167404,0.074596469921859,0,0,0,0,0.0276835905616708,0.0146080808550889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0189016826300935,0,0,0.0552457897410102,0.0162719864271808,0.0241752511986906,0.0490083015268724,0.0196234332723016,0.0278027254030464,0.0077749969694221,0.0263217657517517,0.0274077113351082,0.0338345527732368,0.038095341912391,0.030642958171656,0.02997222335309,0.0224135559277854,0.0256067459839642,0.0141903984706849,0.0185747269211186,0.0221645797173144,0.0433755971941005,0.0332286207253078,0.0145916603480351,0.0505322213353838,0.0110606874701786,0,0,0.0163207333481288,0.0817372904392906,0.0359575303145864,0.0153212890822472,0,0.0333371175305548,0.077024826147024,0.0304067552635962,0.0173140624994805,0 | |||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434704241352084,0.225301871178984,0.499523884574521,0.690077164971779,0.44593214273782,0.327063587524422,0,0,0,0,0,0,0,0,0,0,0.255100480297832,0,0,0,0,0,0,0,0.0514097768499148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56443804640041,0,0,0,0,0,0,0,0.121976689400977,0.965523533501961,0.58831251521849,0.395948777723257,0.458218615059025,0.514973856255353,0.709790506319026,0.686595891483703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187367671491058,0.150224303855383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0,0,0.0476191773904887,0,0,0,0,0,0,0,0.0390607415003592,0,0,0,0,0,0,0,0,0,0,0,0,0.0845301845292944,0,0,0 | |||
|gostat_on_MCL_coexpression= | |||
|ontology_enrichment_celltype=CL:0000181!3.79e-13!5;CL:0000417!3.79e-13!5;CL:0000668!3.79e-13!5;CL:0000412!3.79e-13!5;CL:0000182!3.79e-13!5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0002107!8.03e-34!22;UBERON:0007499!8.03e-34!22;UBERON:0006925!8.03e-34!22;UBERON:0009497!8.03e-34!22;UBERON:0000015!8.03e-34!22;UBERON:0002423!8.03e-34!22;UBERON:0006235!8.03e-34!22;UBERON:0008835!8.03e-34!22;UBERON:0003894!8.03e-34!22;UBERON:0004161!8.03e-34!22;UBERON:0008836!8.03e-34!22;UBERON:0009854!3.04e-32!23;UBERON:0009856!3.04e-32!23;UBERON:0002365!1.82e-29!25;UBERON:0002330!1.82e-29!25;UBERON:0005256!1.52e-17!45;UBERON:0005172!6.90e-16!49;UBERON:0005173!6.90e-16!49;UBERON:0002417!6.90e-16!49;UBERON:0000916!6.90e-16!49;UBERON:0003914!1.75e-14!47;UBERON:0002368!1.81e-12!60;UBERON:0003104!3.21e-12!61;UBERON:0009142!3.21e-12!61;UBERON:0003929!5.32e-12!55;UBERON:0002530!2.69e-11!65;UBERON:0009569!4.40e-11!66;UBERON:0001041!4.91e-10!80;UBERON:0000949!6.29e-10!72;UBERON:0000490!1.44e-09!66;UBERON:0005911!4.87e-09!69;UBERON:0005177!8.41e-09!79;UBERON:0000466!1.45e-07!79;UBERON:0002100!2.19e-07!90 | |||
|tfbs_overrepresentation_for_novel_motifs=0.557864,0.087078,0.529553,0.603273,0.406364,0.618805,0.715644,0.300268,0.310789,0.370407,0.668936,0.702872,0.300533,0.728641,1.0876,0,0.930881,1.02841,0.775038,0.185796,1.22707,0.874994,0.727684,1.04384,0.537749,0.757752,0.754069,0.641282,0.456327,0.645258,0.626183,1.03545,0.395107,0.253145,0.425309,0.0566307,0.384813,0.699032,0.360612,0.328675,0.401916,0.631725,0.134724,0.426986,0.0637209,0.591277,0.847828,0.658142,0.746467,0.459555,0.912738,0.786094,0.220111,1.18062,1.19842,0.73621,0.469329,0.689304,0.26467,0.734051,1.01481,0.796017,1.5593,0.901018,0.747985,0.943088,1.33705,1.68977,1.00999,1.54147,0.509047,0.30684,0.152094,1.23259,0.257421,0.686172,0.253065,1.95065,0.997094,0.494135,0.830212,0.948899,0.794502,0.293164,1.1148,0.0793594,0.0882907,1.20595,0.852952,1.85284,1.40768,1.11989,1.04863,0.412897,0.937248,0.3366,0.297538,1.05152,0.848095,0.20438,1.7727,2.35758,1.16282,0.913356,0.91226,0.631253,0.97421,1.5739,1.24825,0.491483,0.550229,1.16464,0.495367,0.674448,1.41481,0.399936,0.0998646,0.607321,0.932233,0.380707,1.23809,0.879184,0.759676,0.834976,1.46955,1.00091,0.724289,1.04166,1.33551,0.416189,1.14546,0.595426,1.3055,1.77493,1.43666,0.44142,1.39156,0.633235,1.3869,2.2222,1.82084,1.34183,0.772375,1.04623,0.905521,0.632211,0.851091,2.18247,0.569503,0.408309,0.230371,0.133815,1.18223,0.343194,0.749664,1.26545,0.787153,0.438007,1.36673,0.566652,1.39653,1.11392,1.00137,0.547782,0.90208,0.741834,0.383572,0.701187,0.0513167 | |||
|tfbs_overrepresentation_jaspar=MA0003.1;0.211284,MA0004.1;0.603793,MA0006.1;0.419915,MA0007.1;0.587678,MA0009.1;1.06266,MA0014.1;0.0502051,MA0017.1;1.14026,MA0019.1;2.02888,MA0024.1;1.01759,MA0025.1;1.30092,MA0027.1;2.72141,MA0028.1;0.43138,MA0029.1;0.995171,MA0030.1;1.00195,MA0031.1;0.965177,MA0038.1;0.757669,MA0040.1;1.07552,MA0041.1;0.522007,MA0042.1;0.507715,MA0043.1;1.1618,MA0046.1;1.09955,MA0048.1;0.205696,MA0050.1;0.645342,MA0051.1;0.767098,MA0052.1;1.08379,MA0055.1;0.602741,MA0056.1;0,MA0057.1;0.192781,MA0058.1;1.25013,MA0059.1;1.27866,MA0060.1;0.330907,MA0061.1;0.364227,MA0063.1;0,MA0066.1;0.746072,MA0067.1;1.41352,MA0068.1;0.197245,MA0069.1;1.08414,MA0070.1;1.07418,MA0071.1;1.55428,MA0072.1;1.06547,MA0073.1;0.000589538,MA0074.1;0.708108,MA0076.1;0.470037,MA0077.1;1.04318,MA0078.1;0.801834,MA0081.1;0.53877,MA0083.1;1.16099,MA0084.1;1.74401,MA0087.1;1.11687,MA0088.1;0.888325,MA0089.1;0,MA0090.1;0.566938,MA0091.1;0.617887,MA0092.1;0.567278,MA0093.1;1.12162,MA0095.1;0,MA0098.1;0,MA0100.1;0.695835,MA0101.1;0.523409,MA0103.1;0.460936,MA0105.1;0.248108,MA0106.1;0.809991,MA0107.1;0.454197,MA0108.2;0.897859,MA0109.1;0,MA0111.1;0.582193,MA0113.1;0.780358,MA0114.1;2.55088,MA0115.1;2.6202,MA0116.1;0.419688,MA0117.1;1.13165,MA0119.1;0.524046,MA0122.1;1.15196,MA0124.1;1.35963,MA0125.1;1.28445,MA0130.1;0,MA0131.1;0.869325,MA0132.1;0,MA0133.1;0,MA0135.1;1.19898,MA0136.1;0.729175,MA0139.1;0.295945,MA0140.1;0.695713,MA0141.1;3.11252,MA0142.1;0.950155,MA0143.1;0.797553,MA0144.1;0.956957,MA0145.1;0.157686,MA0146.1;0.21827,MA0147.1;0.986917,MA0148.1;0.621195,MA0149.1;0.529387,MA0062.2;0.254018,MA0035.2;0.700704,MA0039.2;0.0511423,MA0138.2;0.861035,MA0002.2;0.809945,MA0137.2;0.479301,MA0104.2;1.52809,MA0047.2;0.75686,MA0112.2;0.927461,MA0065.2;0.929207,MA0150.1;1.43499,MA0151.1;0,MA0152.1;0.756973,MA0153.1;1.21594,MA0154.1;0.203217,MA0155.1;0.515751,MA0156.1;0.469089,MA0157.1;0.91689,MA0158.1;0,MA0159.1;1.01146,MA0160.1;1.51238,MA0161.1;0,MA0162.1;0.245828,MA0163.1;0.0644585,MA0164.1;1.7313,MA0080.2;0.455167,MA0018.2;0.739807,MA0099.2;0.854449,MA0079.2;0.000313198,MA0102.2;1.79669,MA0258.1;0.91616,MA0259.1;0.960816,MA0442.1;0 | |||
}} |
Latest revision as of 17:06, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr11:102269213..102269227,- | p12@Slc25a39 |
Mm9::chr15:82612609..82612614,- | p1@ENSMUST00000075786 |
Mm9::chr16:35932853..35932864,- | p@chr16:35932853..35932864 - |
Mm9::chr16:44061582..44061592,- | p@chr16:44061582..44061592 - |
Mm9::chr16:44061594..44061597,- | p@chr16:44061594..44061597 - |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
no results for this coexpression
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
metabolising cell | 3.79e-13 | 5 |
endopolyploid cell | 3.79e-13 | 5 |
parenchymal cell | 3.79e-13 | 5 |
polyploid cell | 3.79e-13 | 5 |
hepatocyte | 3.79e-13 | 5 |
Ontology term | p-value | n |
---|---|---|
liver | 8.03e-34 | 22 |
epithelial sac | 8.03e-34 | 22 |
digestive gland | 8.03e-34 | 22 |
epithelium of foregut-midgut junction | 8.03e-34 | 22 |
anatomical boundary | 8.03e-34 | 22 |
hepatobiliary system | 8.03e-34 | 22 |
foregut-midgut junction | 8.03e-34 | 22 |
hepatic diverticulum | 8.03e-34 | 22 |
liver primordium | 8.03e-34 | 22 |
septum transversum | 8.03e-34 | 22 |
liver bud | 8.03e-34 | 22 |
digestive tract diverticulum | 3.04e-32 | 23 |
sac | 3.04e-32 | 23 |
exocrine gland | 1.82e-29 | 25 |
exocrine system | 1.82e-29 | 25 |
trunk mesenchyme | 1.52e-17 | 45 |
abdomen element | 6.90e-16 | 49 |
abdominal segment element | 6.90e-16 | 49 |
abdominal segment of trunk | 6.90e-16 | 49 |
abdomen | 6.90e-16 | 49 |
epithelial tube | 1.75e-14 | 47 |
endocrine gland | 1.81e-12 | 60 |
mesenchyme | 3.21e-12 | 61 |
entire embryonic mesenchyme | 3.21e-12 | 61 |
gut epithelium | 5.32e-12 | 55 |
gland | 2.69e-11 | 65 |
subdivision of trunk | 4.40e-11 | 66 |
foregut | 4.91e-10 | 80 |
endocrine system | 6.29e-10 | 72 |
unilaminar epithelium | 1.44e-09 | 66 |
endo-epithelium | 4.87e-09 | 69 |
trunk region element | 8.41e-09 | 79 |
immaterial anatomical entity | 1.45e-07 | 79 |
trunk | 2.19e-07 | 90 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.211284 |
MA0004.1 | 0.603793 |
MA0006.1 | 0.419915 |
MA0007.1 | 0.587678 |
MA0009.1 | 1.06266 |
MA0014.1 | 0.0502051 |
MA0017.1 | 1.14026 |
MA0019.1 | 2.02888 |
MA0024.1 | 1.01759 |
MA0025.1 | 1.30092 |
MA0027.1 | 2.72141 |
MA0028.1 | 0.43138 |
MA0029.1 | 0.995171 |
MA0030.1 | 1.00195 |
MA0031.1 | 0.965177 |
MA0038.1 | 0.757669 |
MA0040.1 | 1.07552 |
MA0041.1 | 0.522007 |
MA0042.1 | 0.507715 |
MA0043.1 | 1.1618 |
MA0046.1 | 1.09955 |
MA0048.1 | 0.205696 |
MA0050.1 | 0.645342 |
MA0051.1 | 0.767098 |
MA0052.1 | 1.08379 |
MA0055.1 | 0.602741 |
MA0056.1 | 0 |
MA0057.1 | 0.192781 |
MA0058.1 | 1.25013 |
MA0059.1 | 1.27866 |
MA0060.1 | 0.330907 |
MA0061.1 | 0.364227 |
MA0063.1 | 0 |
MA0066.1 | 0.746072 |
MA0067.1 | 1.41352 |
MA0068.1 | 0.197245 |
MA0069.1 | 1.08414 |
MA0070.1 | 1.07418 |
MA0071.1 | 1.55428 |
MA0072.1 | 1.06547 |
MA0073.1 | 0.000589538 |
MA0074.1 | 0.708108 |
MA0076.1 | 0.470037 |
MA0077.1 | 1.04318 |
MA0078.1 | 0.801834 |
MA0081.1 | 0.53877 |
MA0083.1 | 1.16099 |
MA0084.1 | 1.74401 |
MA0087.1 | 1.11687 |
MA0088.1 | 0.888325 |
MA0089.1 | 0 |
MA0090.1 | 0.566938 |
MA0091.1 | 0.617887 |
MA0092.1 | 0.567278 |
MA0093.1 | 1.12162 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.695835 |
MA0101.1 | 0.523409 |
MA0103.1 | 0.460936 |
MA0105.1 | 0.248108 |
MA0106.1 | 0.809991 |
MA0107.1 | 0.454197 |
MA0108.2 | 0.897859 |
MA0109.1 | 0 |
MA0111.1 | 0.582193 |
MA0113.1 | 0.780358 |
MA0114.1 | 2.55088 |
MA0115.1 | 2.6202 |
MA0116.1 | 0.419688 |
MA0117.1 | 1.13165 |
MA0119.1 | 0.524046 |
MA0122.1 | 1.15196 |
MA0124.1 | 1.35963 |
MA0125.1 | 1.28445 |
MA0130.1 | 0 |
MA0131.1 | 0.869325 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.19898 |
MA0136.1 | 0.729175 |
MA0139.1 | 0.295945 |
MA0140.1 | 0.695713 |
MA0141.1 | 3.11252 |
MA0142.1 | 0.950155 |
MA0143.1 | 0.797553 |
MA0144.1 | 0.956957 |
MA0145.1 | 0.157686 |
MA0146.1 | 0.21827 |
MA0147.1 | 0.986917 |
MA0148.1 | 0.621195 |
MA0149.1 | 0.529387 |
MA0062.2 | 0.254018 |
MA0035.2 | 0.700704 |
MA0039.2 | 0.0511423 |
MA0138.2 | 0.861035 |
MA0002.2 | 0.809945 |
MA0137.2 | 0.479301 |
MA0104.2 | 1.52809 |
MA0047.2 | 0.75686 |
MA0112.2 | 0.927461 |
MA0065.2 | 0.929207 |
MA0150.1 | 1.43499 |
MA0151.1 | 0 |
MA0152.1 | 0.756973 |
MA0153.1 | 1.21594 |
MA0154.1 | 0.203217 |
MA0155.1 | 0.515751 |
MA0156.1 | 0.469089 |
MA0157.1 | 0.91689 |
MA0158.1 | 0 |
MA0159.1 | 1.01146 |
MA0160.1 | 1.51238 |
MA0161.1 | 0 |
MA0162.1 | 0.245828 |
MA0163.1 | 0.0644585 |
MA0164.1 | 1.7313 |
MA0080.2 | 0.455167 |
MA0018.2 | 0.739807 |
MA0099.2 | 0.854449 |
MA0079.2 | 0.000313198 |
MA0102.2 | 1.79669 |
MA0258.1 | 0.91616 |
MA0259.1 | 0.960816 |
MA0442.1 | 0 |