MCL coexpression mm9:723: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0,0,0.0434987265756618,0.088175261017747,0,0.220540091336309,0.0380372057542822,0.00572052190895671,0.00913378685245542,0.0423098176288522,0.00333321253665857,0.0393027500323096,0.017394418950143,0.0647482454949633,1.00984555364759,1.06781335473958,0.274230646926841,0.245748591318408,0.300940198474234,0,0.0311680233732294,0.541279235547854,0.23380084600626,0.329024240055888,0.0394137452631456,0,0.00847446845832032,0.161254171522085,0.0177265236423641,0.0173950839566791,0.958338864603119,0.179125202685376,0,0.0220405843345282,0.0970007147115062,0.0449564609686121,0.0303678048471484,0.0659438486694087,0.0548547681149874,0.0200913802025349,0.037403143808288,0.034375136579486,0,0,0,0,0.0242825913957406,0,0.00771606661507038,0.00568996784870888,0,0.25569625545838,0.0501892311714437,0.104991180297628,0,0,0,0,0,0.0213207239280454,0.0253460298483294,0,0,0,0,0,0.0141204588184303,0.0199469193347546,0.0213804049842971,0.0378251253500507,0.0109123086691028,0.00866689030825281,0.0200731159533332,0.0260190035394598,0.0453079347071492,0,0,0,0.00538027986792206,0.00380188235580625,0,0,0.0193893011938994,0,0.0112145192034931,0.00578074284787346,0,0.0543136709759014,0.235071242957238,0.123532215587721,0.0434704241352084,0,0,0,0,0.0107511441879825,0.00683455646190839,0.226610051788176,0.428826753901491,0.00572260417947564,0.0910802102935797,0,0,0.339412167270842,0.436757472419946,0.31521742275294,0,0.0100004302423367,0,0,0,0,0,0.014484601417854,0,0,0,0,0.0121735003810417,0.022076806852419,0.0637791159528183,0,0,0,0,0.142015440687312,0.0750571435505488,0.0960963482617351,0,0,0.00514050548005424,0,0,0,0,0.00421182837367051,0.0373748713995148,0,0,0,0.0179741089226215,0.042119808026271,0.0121927862852452,0.0141164521502711,0.0104705762420191,0.0146483681986333,0,0.0311361804354168,0.0225661799288812,0.025447094877806,0.0330023965033927,0.0213093819849198,0,0,0.00788315948399074,0.0231013950740173,0.154466486905675,0.0217240643049498,0.0395784228938487,0.00915002620172692,0.0143809696377157,0.00922800703916586,0,0.0186918966050211,0,0,0.0139111884884914,0.0174257435024928,0.00660154575426048,0,0,0,0,0,0.00425379529581421,0,0,0.0167927983835387,0.0256375600509275,0.0105285910075999,0.00797901069290224,0.00872055405749939,0.00756292965920817,0.0168653336497203,0.00662136857075299,0.00973736644748266,0,0,0,0,0,0.0271049712344966,0.0230320298262282,0.0327783284444535,0,0,0.00294389011296462,0,0,0.00633328814307688,0,0,0.0243259430513138,0.00779341159210384,0.0561367341876879,0.068434207720115,0.0668633255033342,0.0523744340776393,0.0307202104525537,0.0294114045717615,0.0617302951585508,0,0,0,0,0.00716601710131013,0,0,0.0226083932224136,0.00655666358230307,0.0263121990039973,0.0183116036111412,0.0192744553868196,0,0.00774164737207147,0,0,0.0120215008744062,0,0,0.00586723554240733,0.119793731653757,0.129930962899132,0,0,0,0,0.0296867534166822,0,0,0,0.00847275925579778,0.0186120738583182,0.00873549591356574,0.0216505122427232,0,0,0,0,0,0.0142338951899382,0,0.00663147875126409,0,0.0431277612996099,0,0.0214037799757744,0.0112371000179637,0,0,0,0.01324189587654,0.0119268019631849,0,0,0,0.0215713476445079,0.0286773812252551,0.0323611643301343,0.0141803971125952,0.00712812415377886,0.0132315548951216,0.0321969536242545,0,0.0083442441818608,0,0,0,0.00508681107438702,0.00979491454394344,0.00660055475634404,0.0111087966368681,0,0.0532879688141059,0.00814866010703366,0.0314533054200197,0.0547196611923532,0.020488823376937,0.0632834437165897,0.0458715198077133,0.0322902867111244,0.0274642491526575,0,0.00637715600712905,0.0160761885421867,0.0178167415157538,0.00824580172145032,0,0.0202494463977286,0.0100929788726469,0.0100975358632432,0,0,0,0.018154568054503,0.0190647776263048,0.0154336813712235,0.00527554171614426,0.00677982110636083,0.00915665403705771,0.00531569878936061,0,0,0,0,0.00801664161057822,0.0311757107989269,0.0370743703983862,0.0391136979233577,0.043915612747252,0.049636335589704,0.0232045707767465,0.0323188838775377,0.0238769769951282,0.0309320010667759,0.0158113012659583,0.0181296398645267,0.00960106190167404,0,0.263841769499443,0.16957705624491,0.220695414467966,0,0,0,0,0,0,0,0,0.0515496990206491,0,0,0,0,0,0,0.0285407435784016,0,0.0205374254697738,0.0409956584847551,0,0.0073294297058821,0.0159715578577694,0.0081359932135904,0,0.00978461107777356,0.0098117166361508,0,0.0152304224601725,0.00792803615457031,0.00242538736058389,0.0338345527732368,0,0,0,0.0330550306836003,0.0128033729919821,0,0,0.00589368614163519,0.00748964051866952,0,0.0145916603480351,0,0.00553034373508932,0,0.0217344990056098,0.0112441925220423,0,0,0.0153212890822472,0.029053258816805,0,0.00845301845292944,0.0140689222355642,0.00865703124974023,0.0181128231663775|coexpression_dpi_cluster_scores_median=0,0,0,0,0.088175261017747,0,0.166496801550576,0,0,0,0,0,0,0,0,0.845187631149535,0.999864097900552,0.143669040685193,0.149632666139897,0.311758393498381,0,0,0.400276338327252,0.192545433353818,0.282766428779544,0,0,0,0.139893826644815,0,0,0.918909540742122,0.208189948540879,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125665098325543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158508717912236,0.139204399262413,0.055272043172713,0,0,0,0,0,0,0,0.215992311900473,0.37791645191629,0,0,0,0,0.294739483532883,0.274735442323589,0.303422628732977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113326963124454,0,0.0259754887595653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0359524366705627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802151268900158,0.046916887530847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0340889275307749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.024646902068351,0,0.0208870423994129,0,0,0,0,0,0,0.221664011867973,0.160939271735563,0.200132122687681,0,0,0,0,0,0,0,0,0.0344366018768346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=CL:0000050!9.33e-15!9;CL:0000553!9.82e-12!6;CL:0000556!9.82e-12!6;CL:0000049!3.54e-10!19;CL:0000839!7.10e-10!13;CL:0000548!2.94e-09!115;CL:0000255!2.94e-09!115;CL:0000219!3.11e-09!54;CL:0000068!3.11e-09!3;CL:0002202!3.11e-09!3;CL:0000069!3.11e-09!3;CL:0002632!3.11e-09!3;CL:0002368!3.11e-09!3;CL:0000307!3.11e-09!3;CL:0000377!3.11e-09!3;CL:0002371!6.98e-09!118;CL:0000349!8.81e-09!3;CL:0000351!8.81e-09!3;CL:0002320!1.22e-08!46;CL:0000134!1.22e-08!46;CL:0000988!3.28e-08!32;CL:0002032!3.28e-08!32;CL:0000037!3.28e-08!32;CL:0000566!3.28e-08!32;CL:0000837!3.28e-08!32;CL:0000763!8.12e-08!16;CL:0000215!9.54e-08!3;CL:0002031!1.40e-07!25|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0003126!3.11e-09!3;UBERON:0001005!3.11e-09!3;UBERON:0007196!3.11e-09!3;UBERON:0001558!3.11e-09!3;UBERON:0000358!8.81e-09!3;UBERON:0000307!8.81e-09!3;UBERON:0007010!8.81e-09!3;UBERON:0002384!1.22e-08!46|tfbs_overrepresentation_for_novel_motifs=0.321524,0.352573,0.297937,0.360062,1.09907,0.975411,0.458558,0.392928,0.411053,0.10445,0.417132,0.447169,0.124608,0.470194,0.613681,0,0.656089,0.19356,0.364803,0.0560853,0.732601,0.145076,0.469335,0.198877,0.304728,0.496413,0.349241,0.392919,0.238759,0.271461,0.379806,0.754912,0.560002,0.0942651,0.214608,0.218093,0.184038,0.443753,0.498354,0.143746,0.196807,0.38461,0.56316,0.215898,0.0081642,0.349801,0.578773,0.407653,0.255625,0.241306,0.639101,0.522137,0.259389,0.894161,0.911367,0.47699,0.249055,0.435119,0.332535,0.47505,0.735292,0.531188,0.140453,0.628155,0.487593,0.667546,1.04613,1.3932,0.730718,1.24673,0.281085,0.80439,0.03967,0.944464,0.0968968,0.300089,0.313198,0.567793,0.718494,0.268962,0.406536,0.673009,0.529804,0.119727,0.830765,0.0122854,0.0149522,0.572901,0.583509,1.55487,1.11522,0.835661,0.767462,0.592123,0.163126,0.149272,0.388243,0.770215,0.57902,0.234357,0.541671,0.754637,0.87698,0.639679,0.638654,0.3842,0.696857,1.04215,0.273261,0.266818,0.315128,0.878738,0.26996,0.421988,1.12221,0.195318,0.0187247,0.363536,0.657356,0.181004,0.949798,0.607824,0.498153,0.566919,1.17594,0.722111,0.466292,0.760818,1.04463,0.59809,0.86025,0.931072,1.01535,0.48999,1.14365,0.0358067,0.329172,0.385921,1.09487,1.92247,1.5231,1.0508,0.509663,0.765172,1.529,0.385031,0.581788,1.88287,0.882109,1.10485,0.0806411,0.0316649,0.895708,0.46758,0.489108,0.976367,0.523103,0.224422,0.319291,0.328917,1.1043,0.829923,0.722546,0.313083,0.629147,0.482049,0.53929,0.445669,0.0300841|tfbs_overrepresentation_jaspar=MA0003.1;0.00561553,MA0004.1;0.360508,MA0006.1;0.210471,MA0007.1;0.346734,MA0009.1;0.780842,MA0014.1;0.00520703,MA0017.1;0.658116,MA0019.1;1.4676,MA0024.1;0.737933,MA0025.1;1.01089,MA0027.1;2.42079,MA0028.1;0.219287,MA0029.1;0.716673,MA0030.1;0.723093,MA0031.1;0.688336,MA0038.1;0.496338,MA0040.1;0.79313,MA0041.1;0.291712,MA0042.1;0.279998,MA0043.1;0.875991,MA0046.1;0.816137,MA0048.1;0.066679,MA0050.1;0.396459,MA0051.1;0.504875,MA0052.1;0.801048,MA0055.1;0.17385,MA0056.1;0,MA0057.1;0.471918,MA0058.1;0.273976,MA0059.1;0.777514,MA0060.1;0.145297,MA0061.1;0.504772,MA0063.1;0,MA0066.1;0.485868,MA0067.1;1.12095,MA0068.1;0.0621035,MA0069.1;0.801381,MA0070.1;0.791856,MA0071.1;1.02422,MA0072.1;0.783532,MA0073.1;8.10453e-05,MA0074.1;0.451832,MA0076.1;0.249619,MA0077.1;0.762273,MA0078.1;0.536502,MA0081.1;0.305576,MA0083.1;0.875209,MA0084.1;1.44691,MA0087.1;0.832758,MA0088.1;0.973907,MA0089.1;0,MA0090.1;0.877277,MA0091.1;0.372635,MA0092.1;0.329444,MA0093.1;0.226349,MA0095.1;0,MA0098.1;0,MA0100.1;0.440912,MA0101.1;0.292867,MA0103.1;0.242398,MA0105.1;0.632131,MA0106.1;0.543967,MA0107.1;0.237082,MA0108.2;0.625209,MA0109.1;0,MA0111.1;0.342068,MA0113.1;1.28551,MA0114.1;0.167085,MA0115.1;0.878749,MA0116.1;0.210297,MA0117.1;0.846964,MA0119.1;0.293392,MA0122.1;0.866511,MA0124.1;2.42467,MA0125.1;0.994853,MA0130.1;0,MA0131.1;0.598671,MA0132.1;0,MA0133.1;0,MA0135.1;0.911905,MA0136.1;0.470672,MA0139.1;0.121562,MA0140.1;0.440804,MA0141.1;0.719522,MA0142.1;0.674191,MA0143.1;0.53259,MA0144.1;0.169559,MA0145.1;0.163161,MA0146.1;0.00739145,MA0147.1;0.179496,MA0148.1;0.375491,MA0149.1;0.2978,MA0062.2;0.0948004,MA0035.2;0.44524,MA0039.2;0.11913,MA0138.2;0.590987,MA0002.2;0.391079,MA0137.2;0.713675,MA0104.2;0.134457,MA0047.2;0.495607,MA0112.2;0.163154,MA0065.2;0.163769,MA0150.1;0.346631,MA0151.1;0,MA0152.1;0.495709,MA0153.1;0.92832,MA0154.1;0.0653255,MA0155.1;0.186607,MA0156.1;0.694831,MA0157.1;0.642984,MA0158.1;0,MA0159.1;0.187774,MA0160.1;0.378276,MA0161.1;0,MA0162.1;0.00972009,MA0163.1;0.00834216,MA0164.1;0.471016,MA0080.2;0.669221,MA0018.2;0.480226,MA0099.2;0.584892,MA0079.2;0.0139787,MA0102.2;1.49914,MA0258.1;0.473611,MA0259.1;0.170828,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0,0,0,0.0434987265756618,0.088175261017747,0,0.220540091336309,0.0380372057542822,0.00572052190895671,0.00913378685245542,0.0423098176288522,0.00333321253665857,0.0393027500323096,0.017394418950143,0.0647482454949633,1.00984555364759,1.06781335473958,0.274230646926841,0.245748591318408,0.300940198474234,0,0.0311680233732294,0.541279235547854,0.23380084600626,0.329024240055888,0.0394137452631456,0,0.00847446845832032,0.161254171522085,0.0177265236423641,0.0173950839566791,0.958338864603119,0.179125202685376,0,0.0220405843345282,0.0970007147115062,0.0449564609686121,0.0303678048471484,0.0659438486694087,0.0548547681149874,0.0200913802025349,0.037403143808288,0.034375136579486,0,0,0,0,0.0242825913957406,0,0.00771606661507038,0.00568996784870888,0,0.25569625545838,0.0501892311714437,0.104991180297628,0,0,0,0,0,0.0213207239280454,0.0253460298483294,0,0,0,0,0,0.0141204588184303,0.0199469193347546,0.0213804049842971,0.0378251253500507,0.0109123086691028,0.00866689030825281,0.0200731159533332,0.0260190035394598,0.0453079347071492,0,0,0,0.00538027986792206,0.00380188235580625,0,0,0.0193893011938994,0,0.0112145192034931,0.00578074284787346,0,0.0543136709759014,0.235071242957238,0.123532215587721,0.0434704241352084,0,0,0,0,0.0107511441879825,0.00683455646190839,0.226610051788176,0.428826753901491,0.00572260417947564,0.0910802102935797,0,0,0.339412167270842,0.436757472419946,0.31521742275294,0,0.0100004302423367,0,0,0,0,0,0.014484601417854,0,0,0,0,0.0121735003810417,0.022076806852419,0.0637791159528183,0,0,0,0,0.142015440687312,0.0750571435505488,0.0960963482617351,0,0,0.00514050548005424,0,0,0,0,0.00421182837367051,0.0373748713995148,0,0,0,0.0179741089226215,0.042119808026271,0.0121927862852452,0.0141164521502711,0.0104705762420191,0.0146483681986333,0,0.0311361804354168,0.0225661799288812,0.025447094877806,0.0330023965033927,0.0213093819849198,0,0,0.00788315948399074,0.0231013950740173,0.154466486905675,0.0217240643049498,0.0395784228938487,0.00915002620172692,0.0143809696377157,0.00922800703916586,0,0.0186918966050211,0,0,0.0139111884884914,0.0174257435024928,0.00660154575426048,0,0,0,0,0,0.00425379529581421,0,0,0.0167927983835387,0.0256375600509275,0.0105285910075999,0.00797901069290224,0.00872055405749939,0.00756292965920817,0.0168653336497203,0.00662136857075299,0.00973736644748266,0,0,0,0,0,0.0271049712344966,0.0230320298262282,0.0327783284444535,0,0,0.00294389011296462,0,0,0.00633328814307688,0,0,0.0243259430513138,0.00779341159210384,0.0561367341876879,0.068434207720115,0.0668633255033342,0.0523744340776393,0.0307202104525537,0.0294114045717615,0.0617302951585508,0,0,0,0,0.00716601710131013,0,0,0.0226083932224136,0.00655666358230307,0.0263121990039973,0.0183116036111412,0.0192744553868196,0,0.00774164737207147,0,0,0.0120215008744062,0,0,0.00586723554240733,0.119793731653757,0.129930962899132,0,0,0,0,0.0296867534166822,0,0,0,0.00847275925579778,0.0186120738583182,0.00873549591356574,0.0216505122427232,0,0,0,0,0,0.0142338951899382,0,0.00663147875126409,0,0.0431277612996099,0,0.0214037799757744,0.0112371000179637,0,0,0,0.01324189587654,0.0119268019631849,0,0,0,0.0215713476445079,0.0286773812252551,0.0323611643301343,0.0141803971125952,0.00712812415377886,0.0132315548951216,0.0321969536242545,0,0.0083442441818608,0,0,0,0.00508681107438702,0.00979491454394344,0.00660055475634404,0.0111087966368681,0,0.0532879688141059,0.00814866010703366,0.0314533054200197,0.0547196611923532,0.020488823376937,0.0632834437165897,0.0458715198077133,0.0322902867111244,0.0274642491526575,0,0.00637715600712905,0.0160761885421867,0.0178167415157538,0.00824580172145032,0,0.0202494463977286,0.0100929788726469,0.0100975358632432,0,0,0,0.018154568054503,0.0190647776263048,0.0154336813712235,0.00527554171614426,0.00677982110636083,0.00915665403705771,0.00531569878936061,0,0,0,0,0.00801664161057822,0.0311757107989269,0.0370743703983862,0.0391136979233577,0.043915612747252,0.049636335589704,0.0232045707767465,0.0323188838775377,0.0238769769951282,0.0309320010667759,0.0158113012659583,0.0181296398645267,0.00960106190167404,0,0.263841769499443,0.16957705624491,0.220695414467966,0,0,0,0,0,0,0,0,0.0515496990206491,0,0,0,0,0,0,0.0285407435784016,0,0.0205374254697738,0.0409956584847551,0,0.0073294297058821,0.0159715578577694,0.0081359932135904,0,0.00978461107777356,0.0098117166361508,0,0.0152304224601725,0.00792803615457031,0.00242538736058389,0.0338345527732368,0,0,0,0.0330550306836003,0.0128033729919821,0,0,0.00589368614163519,0.00748964051866952,0,0.0145916603480351,0,0.00553034373508932,0,0.0217344990056098,0.0112441925220423,0,0,0.0153212890822472,0.029053258816805,0,0.00845301845292944,0.0140689222355642,0.00865703124974023,0.0181128231663775 | |||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0.088175261017747,0,0.166496801550576,0,0,0,0,0,0,0,0,0.845187631149535,0.999864097900552,0.143669040685193,0.149632666139897,0.311758393498381,0,0,0.400276338327252,0.192545433353818,0.282766428779544,0,0,0,0.139893826644815,0,0,0.918909540742122,0.208189948540879,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125665098325543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158508717912236,0.139204399262413,0.055272043172713,0,0,0,0,0,0,0,0.215992311900473,0.37791645191629,0,0,0,0,0.294739483532883,0.274735442323589,0.303422628732977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113326963124454,0,0.0259754887595653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0359524366705627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802151268900158,0.046916887530847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0340889275307749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.024646902068351,0,0.0208870423994129,0,0,0,0,0,0,0.221664011867973,0.160939271735563,0.200132122687681,0,0,0,0,0,0,0,0,0.0344366018768346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|gostat_on_MCL_coexpression= | |||
|ontology_enrichment_celltype=CL:0000050!9.33e-15!9;CL:0000553!9.82e-12!6;CL:0000556!9.82e-12!6;CL:0000049!3.54e-10!19;CL:0000839!7.10e-10!13;CL:0000548!2.94e-09!115;CL:0000255!2.94e-09!115;CL:0000219!3.11e-09!54;CL:0000068!3.11e-09!3;CL:0002202!3.11e-09!3;CL:0000069!3.11e-09!3;CL:0002632!3.11e-09!3;CL:0002368!3.11e-09!3;CL:0000307!3.11e-09!3;CL:0000377!3.11e-09!3;CL:0002371!6.98e-09!118;CL:0000349!8.81e-09!3;CL:0000351!8.81e-09!3;CL:0002320!1.22e-08!46;CL:0000134!1.22e-08!46;CL:0000988!3.28e-08!32;CL:0002032!3.28e-08!32;CL:0000037!3.28e-08!32;CL:0000566!3.28e-08!32;CL:0000837!3.28e-08!32;CL:0000763!8.12e-08!16;CL:0000215!9.54e-08!3;CL:0002031!1.40e-07!25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0003126!3.11e-09!3;UBERON:0001005!3.11e-09!3;UBERON:0007196!3.11e-09!3;UBERON:0001558!3.11e-09!3;UBERON:0000358!8.81e-09!3;UBERON:0000307!8.81e-09!3;UBERON:0007010!8.81e-09!3;UBERON:0002384!1.22e-08!46 | |||
|tfbs_overrepresentation_for_novel_motifs=0.321524,0.352573,0.297937,0.360062,1.09907,0.975411,0.458558,0.392928,0.411053,0.10445,0.417132,0.447169,0.124608,0.470194,0.613681,0,0.656089,0.19356,0.364803,0.0560853,0.732601,0.145076,0.469335,0.198877,0.304728,0.496413,0.349241,0.392919,0.238759,0.271461,0.379806,0.754912,0.560002,0.0942651,0.214608,0.218093,0.184038,0.443753,0.498354,0.143746,0.196807,0.38461,0.56316,0.215898,0.0081642,0.349801,0.578773,0.407653,0.255625,0.241306,0.639101,0.522137,0.259389,0.894161,0.911367,0.47699,0.249055,0.435119,0.332535,0.47505,0.735292,0.531188,0.140453,0.628155,0.487593,0.667546,1.04613,1.3932,0.730718,1.24673,0.281085,0.80439,0.03967,0.944464,0.0968968,0.300089,0.313198,0.567793,0.718494,0.268962,0.406536,0.673009,0.529804,0.119727,0.830765,0.0122854,0.0149522,0.572901,0.583509,1.55487,1.11522,0.835661,0.767462,0.592123,0.163126,0.149272,0.388243,0.770215,0.57902,0.234357,0.541671,0.754637,0.87698,0.639679,0.638654,0.3842,0.696857,1.04215,0.273261,0.266818,0.315128,0.878738,0.26996,0.421988,1.12221,0.195318,0.0187247,0.363536,0.657356,0.181004,0.949798,0.607824,0.498153,0.566919,1.17594,0.722111,0.466292,0.760818,1.04463,0.59809,0.86025,0.931072,1.01535,0.48999,1.14365,0.0358067,0.329172,0.385921,1.09487,1.92247,1.5231,1.0508,0.509663,0.765172,1.529,0.385031,0.581788,1.88287,0.882109,1.10485,0.0806411,0.0316649,0.895708,0.46758,0.489108,0.976367,0.523103,0.224422,0.319291,0.328917,1.1043,0.829923,0.722546,0.313083,0.629147,0.482049,0.53929,0.445669,0.0300841 | |||
|tfbs_overrepresentation_jaspar=MA0003.1;0.00561553,MA0004.1;0.360508,MA0006.1;0.210471,MA0007.1;0.346734,MA0009.1;0.780842,MA0014.1;0.00520703,MA0017.1;0.658116,MA0019.1;1.4676,MA0024.1;0.737933,MA0025.1;1.01089,MA0027.1;2.42079,MA0028.1;0.219287,MA0029.1;0.716673,MA0030.1;0.723093,MA0031.1;0.688336,MA0038.1;0.496338,MA0040.1;0.79313,MA0041.1;0.291712,MA0042.1;0.279998,MA0043.1;0.875991,MA0046.1;0.816137,MA0048.1;0.066679,MA0050.1;0.396459,MA0051.1;0.504875,MA0052.1;0.801048,MA0055.1;0.17385,MA0056.1;0,MA0057.1;0.471918,MA0058.1;0.273976,MA0059.1;0.777514,MA0060.1;0.145297,MA0061.1;0.504772,MA0063.1;0,MA0066.1;0.485868,MA0067.1;1.12095,MA0068.1;0.0621035,MA0069.1;0.801381,MA0070.1;0.791856,MA0071.1;1.02422,MA0072.1;0.783532,MA0073.1;8.10453e-05,MA0074.1;0.451832,MA0076.1;0.249619,MA0077.1;0.762273,MA0078.1;0.536502,MA0081.1;0.305576,MA0083.1;0.875209,MA0084.1;1.44691,MA0087.1;0.832758,MA0088.1;0.973907,MA0089.1;0,MA0090.1;0.877277,MA0091.1;0.372635,MA0092.1;0.329444,MA0093.1;0.226349,MA0095.1;0,MA0098.1;0,MA0100.1;0.440912,MA0101.1;0.292867,MA0103.1;0.242398,MA0105.1;0.632131,MA0106.1;0.543967,MA0107.1;0.237082,MA0108.2;0.625209,MA0109.1;0,MA0111.1;0.342068,MA0113.1;1.28551,MA0114.1;0.167085,MA0115.1;0.878749,MA0116.1;0.210297,MA0117.1;0.846964,MA0119.1;0.293392,MA0122.1;0.866511,MA0124.1;2.42467,MA0125.1;0.994853,MA0130.1;0,MA0131.1;0.598671,MA0132.1;0,MA0133.1;0,MA0135.1;0.911905,MA0136.1;0.470672,MA0139.1;0.121562,MA0140.1;0.440804,MA0141.1;0.719522,MA0142.1;0.674191,MA0143.1;0.53259,MA0144.1;0.169559,MA0145.1;0.163161,MA0146.1;0.00739145,MA0147.1;0.179496,MA0148.1;0.375491,MA0149.1;0.2978,MA0062.2;0.0948004,MA0035.2;0.44524,MA0039.2;0.11913,MA0138.2;0.590987,MA0002.2;0.391079,MA0137.2;0.713675,MA0104.2;0.134457,MA0047.2;0.495607,MA0112.2;0.163154,MA0065.2;0.163769,MA0150.1;0.346631,MA0151.1;0,MA0152.1;0.495709,MA0153.1;0.92832,MA0154.1;0.0653255,MA0155.1;0.186607,MA0156.1;0.694831,MA0157.1;0.642984,MA0158.1;0,MA0159.1;0.187774,MA0160.1;0.378276,MA0161.1;0,MA0162.1;0.00972009,MA0163.1;0.00834216,MA0164.1;0.471016,MA0080.2;0.669221,MA0018.2;0.480226,MA0099.2;0.584892,MA0079.2;0.0139787,MA0102.2;1.49914,MA0258.1;0.473611,MA0259.1;0.170828,MA0442.1;0 | |||
}} |
Latest revision as of 15:47, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr13:112748565..112748568,+ | p@chr13:112748565..112748568 + |
Mm9::chr15:78389266..78389271,+ | p@chr15:78389266..78389271 + |
Mm9::chr16:72639852..72639856,+ | p@chr16:72639852..72639856 + |
Mm9::chr19:47245689..47245693,- | p1@ENSMUST00000169692 |
Mm9::chr1:195437410..195437413,+ | p@chr1:195437410..195437413 + |
Mm9::chr2:72923513..72923516,+ | p@chr2:72923513..72923516 + |
Mm9::chr3:40309083..40309085,+ | p@chr3:40309083..40309085 + |
Mm9::chr5:91567069..91567071,+ | p@chr5:91567069..91567071 + |
Mm9::chr7:152402163..152402164,+ | p@chr7:152402163..152402164 + |
Mm9::chr9:26999322..26999323,+ | p@chr9:26999322..26999323 + |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
no results for this coexpression
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
megakaryocyte-erythroid progenitor cell | 9.33e-15 | 9 |
megakaryocyte progenitor cell | 9.82e-12 | 6 |
megakaryocyte | 9.82e-12 | 6 |
common myeloid progenitor | 3.54e-10 | 19 |
myeloid lineage restricted progenitor cell | 7.10e-10 | 13 |
animal cell | 2.94e-09 | 115 |
eukaryotic cell | 2.94e-09 | 115 |
motile cell | 3.11e-09 | 54 |
duct epithelial cell | 3.11e-09 | 3 |
epithelial cell of tracheobronchial tree | 3.11e-09 | 3 |
branched duct epithelial cell | 3.11e-09 | 3 |
epithelial cell of lower respiratory tract | 3.11e-09 | 3 |
respiratory epithelial cell | 3.11e-09 | 3 |
tracheal epithelial cell | 3.11e-09 | 3 |
tracheoblast | 3.11e-09 | 3 |
somatic cell | 6.98e-09 | 118 |
extraembryonic cell | 8.81e-09 | 3 |
trophoblast cell | 8.81e-09 | 3 |
connective tissue cell | 1.22e-08 | 46 |
mesenchymal cell | 1.22e-08 | 46 |
hematopoietic cell | 3.28e-08 | 32 |
hematopoietic oligopotent progenitor cell | 3.28e-08 | 32 |
hematopoietic stem cell | 3.28e-08 | 32 |
angioblastic mesenchymal cell | 3.28e-08 | 32 |
hematopoietic multipotent progenitor cell | 3.28e-08 | 32 |
myeloid cell | 8.12e-08 | 16 |
barrier cell | 9.54e-08 | 3 |
hematopoietic lineage restricted progenitor cell | 1.40e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
trachea | 3.11e-09 | 3 |
respiratory airway | 3.11e-09 | 3 |
tracheobronchial tree | 3.11e-09 | 3 |
lower respiratory tract | 3.11e-09 | 3 |
blastocyst | 8.81e-09 | 3 |
blastula | 8.81e-09 | 3 |
cleaving embryo | 8.81e-09 | 3 |
connective tissue | 1.22e-08 | 46 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.00561553 |
MA0004.1 | 0.360508 |
MA0006.1 | 0.210471 |
MA0007.1 | 0.346734 |
MA0009.1 | 0.780842 |
MA0014.1 | 0.00520703 |
MA0017.1 | 0.658116 |
MA0019.1 | 1.4676 |
MA0024.1 | 0.737933 |
MA0025.1 | 1.01089 |
MA0027.1 | 2.42079 |
MA0028.1 | 0.219287 |
MA0029.1 | 0.716673 |
MA0030.1 | 0.723093 |
MA0031.1 | 0.688336 |
MA0038.1 | 0.496338 |
MA0040.1 | 0.79313 |
MA0041.1 | 0.291712 |
MA0042.1 | 0.279998 |
MA0043.1 | 0.875991 |
MA0046.1 | 0.816137 |
MA0048.1 | 0.066679 |
MA0050.1 | 0.396459 |
MA0051.1 | 0.504875 |
MA0052.1 | 0.801048 |
MA0055.1 | 0.17385 |
MA0056.1 | 0 |
MA0057.1 | 0.471918 |
MA0058.1 | 0.273976 |
MA0059.1 | 0.777514 |
MA0060.1 | 0.145297 |
MA0061.1 | 0.504772 |
MA0063.1 | 0 |
MA0066.1 | 0.485868 |
MA0067.1 | 1.12095 |
MA0068.1 | 0.0621035 |
MA0069.1 | 0.801381 |
MA0070.1 | 0.791856 |
MA0071.1 | 1.02422 |
MA0072.1 | 0.783532 |
MA0073.1 | 8.10453e-05 |
MA0074.1 | 0.451832 |
MA0076.1 | 0.249619 |
MA0077.1 | 0.762273 |
MA0078.1 | 0.536502 |
MA0081.1 | 0.305576 |
MA0083.1 | 0.875209 |
MA0084.1 | 1.44691 |
MA0087.1 | 0.832758 |
MA0088.1 | 0.973907 |
MA0089.1 | 0 |
MA0090.1 | 0.877277 |
MA0091.1 | 0.372635 |
MA0092.1 | 0.329444 |
MA0093.1 | 0.226349 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.440912 |
MA0101.1 | 0.292867 |
MA0103.1 | 0.242398 |
MA0105.1 | 0.632131 |
MA0106.1 | 0.543967 |
MA0107.1 | 0.237082 |
MA0108.2 | 0.625209 |
MA0109.1 | 0 |
MA0111.1 | 0.342068 |
MA0113.1 | 1.28551 |
MA0114.1 | 0.167085 |
MA0115.1 | 0.878749 |
MA0116.1 | 0.210297 |
MA0117.1 | 0.846964 |
MA0119.1 | 0.293392 |
MA0122.1 | 0.866511 |
MA0124.1 | 2.42467 |
MA0125.1 | 0.994853 |
MA0130.1 | 0 |
MA0131.1 | 0.598671 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.911905 |
MA0136.1 | 0.470672 |
MA0139.1 | 0.121562 |
MA0140.1 | 0.440804 |
MA0141.1 | 0.719522 |
MA0142.1 | 0.674191 |
MA0143.1 | 0.53259 |
MA0144.1 | 0.169559 |
MA0145.1 | 0.163161 |
MA0146.1 | 0.00739145 |
MA0147.1 | 0.179496 |
MA0148.1 | 0.375491 |
MA0149.1 | 0.2978 |
MA0062.2 | 0.0948004 |
MA0035.2 | 0.44524 |
MA0039.2 | 0.11913 |
MA0138.2 | 0.590987 |
MA0002.2 | 0.391079 |
MA0137.2 | 0.713675 |
MA0104.2 | 0.134457 |
MA0047.2 | 0.495607 |
MA0112.2 | 0.163154 |
MA0065.2 | 0.163769 |
MA0150.1 | 0.346631 |
MA0151.1 | 0 |
MA0152.1 | 0.495709 |
MA0153.1 | 0.92832 |
MA0154.1 | 0.0653255 |
MA0155.1 | 0.186607 |
MA0156.1 | 0.694831 |
MA0157.1 | 0.642984 |
MA0158.1 | 0 |
MA0159.1 | 0.187774 |
MA0160.1 | 0.378276 |
MA0161.1 | 0 |
MA0162.1 | 0.00972009 |
MA0163.1 | 0.00834216 |
MA0164.1 | 0.471016 |
MA0080.2 | 0.669221 |
MA0018.2 | 0.480226 |
MA0099.2 | 0.584892 |
MA0079.2 | 0.0139787 |
MA0102.2 | 1.49914 |
MA0258.1 | 0.473611 |
MA0259.1 | 0.170828 |
MA0442.1 | 0 |