Coexpression cluster:C1405: Difference between revisions
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{{Coexpression_clusters | 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convertase 2 activity!0.00588650804177389!5126$GO:0014059!regulation of dopamine secretion!0.00588650804177389!1141$GO:0021955!central nervous system neuron axonogenesis!0.00588650804177389!1141$GO:0014046!dopamine secretion!0.00588650804177389!1141$GO:0021952!central nervous system projection neuron axonogenesis!0.00588650804177389!1141$GO:0032225!regulation of synaptic transmission, dopaminergic!0.00588650804177389!1141$GO:0048814!regulation of dendrite morphogenesis!0.00588650804177389!1141$GO:0016808!proprotein convertase activity!0.00588650804177389!5126$GO:0050433!regulation of catecholamine secretion!0.00588650804177389!1141$GO:0050773!regulation of dendrite development!0.00588650804177389!1141$GO:0050432!catecholamine secretion!0.00588650804177389!1141$GO:0048813!dendrite morphogenesis!0.00588650804177389!1141$GO:0035094!response to nicotine!0.00588650804177389!1141$GO:0008306!associative learning!0.00588650804177389!1141$GO:0021954!central nervous system neuron development!0.00588650804177389!1141$GO:0001963!synaptic transmission, dopaminergic!0.00727114064039783!1141$GO:0021953!central nervous system neuron differentiation!0.00727114064039783!1141$GO:0043279!response to alkaloid!0.00784706013717014!1141$GO:0030890!positive regulation of B cell proliferation!0.00784706013717014!1141$GO:0051899!membrane depolarization!0.00784706013717014!1141$GO:0030888!regulation of B cell proliferation!0.00784706013717014!1141$GO:0007613!memory!0.00784706013717014!1141$GO:0014070!response to organic cyclic substance!0.00784706013717014!1141$GO:0007267!cell-cell signaling!0.00784706013717014!5126;1141$GO:0016358!dendrite development!0.00784706013717014!1141$GO:0046928!regulation of neurotransmitter secretion!0.00784706013717014!1141$GO:0007271!synaptic transmission, cholinergic!0.00784706013717014!1141$GO:0005892!nicotinic acetylcholine-gated receptor-channel complex!0.00819713399072745!1141$GO:0050804!regulation of synaptic transmission!0.00962878184772167!1141$GO:0007612!learning!0.00962878184772167!1141$GO:0051969!regulation of transmission of nerve impulse!0.00962878184772167!1141$GO:0050871!positive regulation of B cell activation!0.00962878184772167!1141$GO:0042100!B cell proliferation!0.00962878184772167!1141$GO:0007270!nerve-nerve synaptic transmission!0.00986449096606127!1141$GO:0015464!acetylcholine receptor activity!0.0105907245387965!1141$GO:0042166!acetylcholine binding!0.0107865314738784!1141$GO:0004889!nicotinic acetylcholine-activated cation-selective channel activity!0.010971726164849!1141$GO:0031644!regulation of neurological process!0.0113135441234759!1141$GO:0050864!regulation of B cell activation!0.0113135441234759!1141$GO:0032946!positive regulation of mononuclear cell proliferation!0.0129120955954723!1141$GO:0050671!positive regulation of lymphocyte proliferation!0.0129120955954723!1141$GO:0042391!regulation of membrane potential!0.0130244367204868!1141$GO:0046879!hormone secretion!0.0139514273861003!1141$GO:0004289!subtilase activity!0.0140349464792311!5126$GO:0050767!regulation of neurogenesis!0.0148980047794665!1141$GO:0007269!neurotransmitter secretion!0.0153402913403732!1141$GO:0050670!regulation of lymphocyte proliferation!0.0154352590373835!1141$GO:0032944!regulation of mononuclear cell proliferation!0.0154352590373835!1141$GO:0043176!amine binding!0.0155225462346516!1141$GO:0007611!learning and/or memory!0.0155225462346516!1141$GO:0001666!response to hypoxia!0.016599698156691!1141$GO:0009897!external side of plasma membrane!0.0166898725144052!1141$GO:0051251!positive regulation of lymphocyte activation!0.0166898725144052!1141$GO:0045055!regulated secretory pathway!0.0166898725144052!1141$GO:0032943!mononuclear cell proliferation!0.0166898725144052!1141$GO:0046651!lymphocyte proliferation!0.0166898725144052!1141$GO:0051046!regulation of secretion!0.018250114138437!1141$GO:0042113!B cell activation!0.0185263443156412!1141$GO:0010033!response to organic substance!0.0185263443156412!1141$GO:0003001!generation of a signal involved in cell-cell signaling!0.0205633800705441!1141$GO:0005231!excitatory extracellular ligand-gated ion channel activity!0.0208029434278018!1141$GO:0051249!regulation of lymphocyte activation!0.0216019449595088!1141$GO:0001505!regulation of neurotransmitter levels!0.0218172203414233!1141$GO:0050865!regulation of cell activation!0.0220257035271641!1141$GO:0043235!receptor complex!0.0297930673958638!1141$GO:0007409!axonogenesis!0.0304050423764427!1141$GO:0048667!neuron morphogenesis during differentiation!0.0310584828125304!1141$GO:0048812!neurite morphogenesis!0.0310584828125304!1141$GO:0000904!cellular morphogenesis during differentiation!0.0321330951278089!1141$GO:0005230!extracellular ligand-gated ion channel activity!0.0329261050180939!1141$GO:0031175!neurite development!0.0334496300870671!1141$GO:0030594!neurotransmitter receptor activity!0.0344449617093647!1141$GO:0042165!neurotransmitter binding!0.0349327699114972!1141$GO:0009986!cell surface!0.0349350746353671!1141$GO:0045211!postsynaptic membrane!0.0349350746353671!1141$GO:0048666!neuron development!0.0353916510545207!1141$GO:0046649!lymphocyte activation!0.0353916510545207!1141$GO:0044456!synapse part!0.0360328383118421!1141$GO:0015276!ligand-gated ion channel activity!0.0360328383118421!1141$GO:0022834!ligand-gated channel activity!0.0360328383118421!1141$GO:0045321!leukocyte activation!0.0390415637659016!1141$GO:0006816!calcium ion transport!0.0392047360730927!1141$GO:0032990!cell part morphogenesis!0.0421350544475285!1141$GO:0048858!cell projection morphogenesis!0.0421350544475285!1141$GO:0030030!cell projection organization and biogenesis!0.0421350544475285!1141$GO:0001775!cell activation!0.0423697106789525!1141$GO:0030182!neuron differentiation!0.0423697106789525!1141$GO:0007601!visual perception!0.0439646645802476!1141$GO:0050953!sensory perception of light stimulus!0.0439646645802476!1141$GO:0008284!positive regulation of cell proliferation!0.0442068515711884!1141$GO:0007417!central nervous system development!0.0442068515711884!1141$GO:0050793!regulation of developmental process!0.0442068515711884!1141$GO:0055082!cellular chemical homeostasis!0.0442068515711884!1141$GO:0006873!cellular ion homeostasis!0.0442068515711884!1141$GO:0045045!secretory pathway!0.0442068515711884!1141$GO:0048699!generation of neurons!0.0442068515711884!1141$GO:0015674!di-, tri-valent inorganic cation transport!0.0446484715958753!1141$GO:0022008!neurogenesis!0.0468559071508107!1141$GO:0050801!ion homeostasis!0.0472608049517232!1141$GO:0051239!regulation of multicellular organismal 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51.1;0.661179,MA0052.1;0.959373,MA0055.1;0.808182,MA0056.1;0,MA0057.1;1.41984,MA0058.1;0.458909,MA0059.1;0.457555,MA0060.1;2.08473,MA0061.1;1.93637,MA0063.1;0,MA0066.1;0.66601,MA0067.1;1.35893,MA0068.1;0.578694,MA0069.1;1.02175,MA0070.1;1.01032,MA0071.1;1.51422,MA0072.1;1.00572,MA0073.1;0.216116,MA0074.1;0.660398,MA0076.1;0.475586,MA0077.1;0.997832,MA0078.1;0.763954,MA0081.1;0.457725,MA0083.1;1.04447,MA0084.1;1.5477,MA0087.1;1.00322,MA0088.1;0.32124,MA0089.1;0,MA0090.1;0.490736,MA0091.1;2.36274,MA0092.1;0.522012,MA0093.1;0.394379,MA0095.1;0,MA0098.1;0,MA0100.1;0.679972,MA0101.1;1.02896,MA0103.1;0.381434,MA0105.1;1.34409,MA0106.1;0.70837,MA0107.1;0.857383,MA0108.2;0.868347,MA0109.1;0,MA0111.1;0.504913,MA0113.1;0.725375,MA0114.1;0.314898,MA0115.1;1.28169,MA0116.1;0.865577,MA0117.1;1.07516,MA0119.1;0.440684,MA0122.1;1.10154,MA0124.1;1.23968,MA0125.1;1.15445,MA0130.1;0,MA0131.1;0.782708,MA0132.1;0,MA0133.1;0,MA0135.1;1.06778,MA0136.1;0.672893,MA0139.1;0.641617,MA0140.1;0.622527,MA0141.1;1.15452,MA0142.1;0.838805,MA0143.1;0.725558,MA0144.1;0.811435,MA0145.1;1.16614,MA0146.1;1.8938,MA0147.1;0.327615,MA0148.1;0.584698,MA0149.1;1.48729,MA0062.2;1.22729,MA0035.2;0.621793,MA0039.2;1.47843,MA0138.2;0.765223,MA0002.2;0.255126,MA0137.2;0.414885,MA0104.2;0.26661,MA0047.2;0.695777,MA0112.2;1.12726,MA0065.2;0.718489,MA0150.1;0.484557,MA0151.1;0,MA0152.1;0.629368,MA0153.1;1.13732,MA0154.1;1.3291,MA0155.1;0.65596,MA0156.1;1.07131,MA0157.1;0.810597,MA0158.1;0,MA0159.1;0.328286,MA0160.1;0.600559,MA0161.1;0,MA0162.1;2.97671,MA0163.1;0.813808,MA0164.1;0.738243,MA0080.2;1.02158,MA0018.2;1.69036,MA0099.2;0.629739,MA0079.2;3.22572,MA0102.2;1.58513,MA0258.1;0.289793,MA0259.1;0.336472,MA0442.1;0}} | ||
|full_id=C1405_smallcell_pineal_small_occipital_somatostatinoma_medial_amygdala | |||
|id=C1405 | |||
}} |
Latest revision as of 11:44, 17 September 2013
Full id: C1405_smallcell_pineal_small_occipital_somatostatinoma_medial_amygdala
Phase1 CAGE Peaks
Hg19::chr15:51973680..51973707,+ | p1@SCG3 |
Hg19::chr15:51973708..51973725,+ | p3@SCG3 |
Hg19::chr1:154540296..154540327,+ | p1@CHRNB2 |
Hg19::chr1:42846443..42846502,+ | p1@RIMKLA |
Hg19::chr20:17207640..17207661,+ | p2@PCSK2 |
Hg19::chr2:220408724..220408789,+ | p1@TMEM198 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0004286 | proprotein convertase 2 activity | 0.00588650804177389 |
GO:0014059 | regulation of dopamine secretion | 0.00588650804177389 |
GO:0021955 | central nervous system neuron axonogenesis | 0.00588650804177389 |
GO:0014046 | dopamine secretion | 0.00588650804177389 |
GO:0021952 | central nervous system projection neuron axonogenesis | 0.00588650804177389 |
GO:0032225 | regulation of synaptic transmission, dopaminergic | 0.00588650804177389 |
GO:0048814 | regulation of dendrite morphogenesis | 0.00588650804177389 |
GO:0016808 | proprotein convertase activity | 0.00588650804177389 |
GO:0050433 | regulation of catecholamine secretion | 0.00588650804177389 |
GO:0050773 | regulation of dendrite development | 0.00588650804177389 |
GO:0050432 | catecholamine secretion | 0.00588650804177389 |
GO:0048813 | dendrite morphogenesis | 0.00588650804177389 |
GO:0035094 | response to nicotine | 0.00588650804177389 |
GO:0008306 | associative learning | 0.00588650804177389 |
GO:0021954 | central nervous system neuron development | 0.00588650804177389 |
GO:0001963 | synaptic transmission, dopaminergic | 0.00727114064039783 |
GO:0021953 | central nervous system neuron differentiation | 0.00727114064039783 |
GO:0043279 | response to alkaloid | 0.00784706013717014 |
GO:0030890 | positive regulation of B cell proliferation | 0.00784706013717014 |
GO:0051899 | membrane depolarization | 0.00784706013717014 |
GO:0030888 | regulation of B cell proliferation | 0.00784706013717014 |
GO:0007613 | memory | 0.00784706013717014 |
GO:0014070 | response to organic cyclic substance | 0.00784706013717014 |
GO:0007267 | cell-cell signaling | 0.00784706013717014 |
GO:0016358 | dendrite development | 0.00784706013717014 |
GO:0046928 | regulation of neurotransmitter secretion | 0.00784706013717014 |
GO:0007271 | synaptic transmission, cholinergic | 0.00784706013717014 |
GO:0005892 | nicotinic acetylcholine-gated receptor-channel complex | 0.00819713399072745 |
GO:0050804 | regulation of synaptic transmission | 0.00962878184772167 |
GO:0007612 | learning | 0.00962878184772167 |
GO:0051969 | regulation of transmission of nerve impulse | 0.00962878184772167 |
GO:0050871 | positive regulation of B cell activation | 0.00962878184772167 |
GO:0042100 | B cell proliferation | 0.00962878184772167 |
GO:0007270 | nerve-nerve synaptic transmission | 0.00986449096606127 |
GO:0015464 | acetylcholine receptor activity | 0.0105907245387965 |
GO:0042166 | acetylcholine binding | 0.0107865314738784 |
GO:0004889 | nicotinic acetylcholine-activated cation-selective channel activity | 0.010971726164849 |
GO:0031644 | regulation of neurological process | 0.0113135441234759 |
GO:0050864 | regulation of B cell activation | 0.0113135441234759 |
GO:0032946 | positive regulation of mononuclear cell proliferation | 0.0129120955954723 |
GO:0050671 | positive regulation of lymphocyte proliferation | 0.0129120955954723 |
GO:0042391 | regulation of membrane potential | 0.0130244367204868 |
GO:0046879 | hormone secretion | 0.0139514273861003 |
GO:0004289 | subtilase activity | 0.0140349464792311 |
GO:0050767 | regulation of neurogenesis | 0.0148980047794665 |
GO:0007269 | neurotransmitter secretion | 0.0153402913403732 |
GO:0050670 | regulation of lymphocyte proliferation | 0.0154352590373835 |
GO:0032944 | regulation of mononuclear cell proliferation | 0.0154352590373835 |
GO:0043176 | amine binding | 0.0155225462346516 |
GO:0007611 | learning and/or memory | 0.0155225462346516 |
GO:0001666 | response to hypoxia | 0.016599698156691 |
GO:0009897 | external side of plasma membrane | 0.0166898725144052 |
GO:0051251 | positive regulation of lymphocyte activation | 0.0166898725144052 |
GO:0045055 | regulated secretory pathway | 0.0166898725144052 |
GO:0032943 | mononuclear cell proliferation | 0.0166898725144052 |
GO:0046651 | lymphocyte proliferation | 0.0166898725144052 |
GO:0051046 | regulation of secretion | 0.018250114138437 |
GO:0042113 | B cell activation | 0.0185263443156412 |
GO:0010033 | response to organic substance | 0.0185263443156412 |
GO:0003001 | generation of a signal involved in cell-cell signaling | 0.0205633800705441 |
GO:0005231 | excitatory extracellular ligand-gated ion channel activity | 0.0208029434278018 |
GO:0051249 | regulation of lymphocyte activation | 0.0216019449595088 |
GO:0001505 | regulation of neurotransmitter levels | 0.0218172203414233 |
GO:0050865 | regulation of cell activation | 0.0220257035271641 |
GO:0043235 | receptor complex | 0.0297930673958638 |
GO:0007409 | axonogenesis | 0.0304050423764427 |
GO:0048667 | neuron morphogenesis during differentiation | 0.0310584828125304 |
GO:0048812 | neurite morphogenesis | 0.0310584828125304 |
GO:0000904 | cellular morphogenesis during differentiation | 0.0321330951278089 |
GO:0005230 | extracellular ligand-gated ion channel activity | 0.0329261050180939 |
GO:0031175 | neurite development | 0.0334496300870671 |
GO:0030594 | neurotransmitter receptor activity | 0.0344449617093647 |
GO:0042165 | neurotransmitter binding | 0.0349327699114972 |
GO:0009986 | cell surface | 0.0349350746353671 |
GO:0045211 | postsynaptic membrane | 0.0349350746353671 |
GO:0048666 | neuron development | 0.0353916510545207 |
GO:0046649 | lymphocyte activation | 0.0353916510545207 |
GO:0044456 | synapse part | 0.0360328383118421 |
GO:0015276 | ligand-gated ion channel activity | 0.0360328383118421 |
GO:0022834 | ligand-gated channel activity | 0.0360328383118421 |
GO:0045321 | leukocyte activation | 0.0390415637659016 |
GO:0006816 | calcium ion transport | 0.0392047360730927 |
GO:0032990 | cell part morphogenesis | 0.0421350544475285 |
GO:0048858 | cell projection morphogenesis | 0.0421350544475285 |
GO:0030030 | cell projection organization and biogenesis | 0.0421350544475285 |
GO:0001775 | cell activation | 0.0423697106789525 |
GO:0030182 | neuron differentiation | 0.0423697106789525 |
GO:0007601 | visual perception | 0.0439646645802476 |
GO:0050953 | sensory perception of light stimulus | 0.0439646645802476 |
GO:0008284 | positive regulation of cell proliferation | 0.0442068515711884 |
GO:0007417 | central nervous system development | 0.0442068515711884 |
GO:0050793 | regulation of developmental process | 0.0442068515711884 |
GO:0055082 | cellular chemical homeostasis | 0.0442068515711884 |
GO:0006873 | cellular ion homeostasis | 0.0442068515711884 |
GO:0045045 | secretory pathway | 0.0442068515711884 |
GO:0048699 | generation of neurons | 0.0442068515711884 |
GO:0015674 | di-, tri-valent inorganic cation transport | 0.0446484715958753 |
GO:0022008 | neurogenesis | 0.0468559071508107 |
GO:0050801 | ion homeostasis | 0.0472608049517232 |
GO:0051239 | regulation of multicellular organismal process | 0.0485262389823197 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.69e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 7.47e-09 | 10 |
germ cell and embryonal cancer | 5.69e-08 | 22 |
germ cell cancer | 5.69e-08 | 22 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 4.08206 |
MA0004.1 | 0.558729 |
MA0006.1 | 0.391183 |
MA0007.1 | 0.539222 |
MA0009.1 | 1.03681 |
MA0014.1 | 2.03395 |
MA0017.1 | 0.432438 |
MA0019.1 | 0.7124 |
MA0024.1 | 0.929647 |
MA0025.1 | 1.17262 |
MA0027.1 | 2.65688 |
MA0028.1 | 1.05129 |
MA0029.1 | 0.949428 |
MA0030.1 | 0.937696 |
MA0031.1 | 0.871496 |
MA0038.1 | 0.665566 |
MA0040.1 | 0.955415 |
MA0041.1 | 0.578072 |
MA0042.1 | 0.544748 |
MA0043.1 | 1.03713 |
MA0046.1 | 1.02569 |
MA0048.1 | 0.906394 |
MA0050.1 | 0.545671 |
MA0051.1 | 0.661179 |
MA0052.1 | 0.959373 |
MA0055.1 | 0.808182 |
MA0056.1 | 0 |
MA0057.1 | 1.41984 |
MA0058.1 | 0.458909 |
MA0059.1 | 0.457555 |
MA0060.1 | 2.08473 |
MA0061.1 | 1.93637 |
MA0063.1 | 0 |
MA0066.1 | 0.66601 |
MA0067.1 | 1.35893 |
MA0068.1 | 0.578694 |
MA0069.1 | 1.02175 |
MA0070.1 | 1.01032 |
MA0071.1 | 1.51422 |
MA0072.1 | 1.00572 |
MA0073.1 | 0.216116 |
MA0074.1 | 0.660398 |
MA0076.1 | 0.475586 |
MA0077.1 | 0.997832 |
MA0078.1 | 0.763954 |
MA0081.1 | 0.457725 |
MA0083.1 | 1.04447 |
MA0084.1 | 1.5477 |
MA0087.1 | 1.00322 |
MA0088.1 | 0.32124 |
MA0089.1 | 0 |
MA0090.1 | 0.490736 |
MA0091.1 | 2.36274 |
MA0092.1 | 0.522012 |
MA0093.1 | 0.394379 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.679972 |
MA0101.1 | 1.02896 |
MA0103.1 | 0.381434 |
MA0105.1 | 1.34409 |
MA0106.1 | 0.70837 |
MA0107.1 | 0.857383 |
MA0108.2 | 0.868347 |
MA0109.1 | 0 |
MA0111.1 | 0.504913 |
MA0113.1 | 0.725375 |
MA0114.1 | 0.314898 |
MA0115.1 | 1.28169 |
MA0116.1 | 0.865577 |
MA0117.1 | 1.07516 |
MA0119.1 | 0.440684 |
MA0122.1 | 1.10154 |
MA0124.1 | 1.23968 |
MA0125.1 | 1.15445 |
MA0130.1 | 0 |
MA0131.1 | 0.782708 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.06778 |
MA0136.1 | 0.672893 |
MA0139.1 | 0.641617 |
MA0140.1 | 0.622527 |
MA0141.1 | 1.15452 |
MA0142.1 | 0.838805 |
MA0143.1 | 0.725558 |
MA0144.1 | 0.811435 |
MA0145.1 | 1.16614 |
MA0146.1 | 1.8938 |
MA0147.1 | 0.327615 |
MA0148.1 | 0.584698 |
MA0149.1 | 1.48729 |
MA0062.2 | 1.22729 |
MA0035.2 | 0.621793 |
MA0039.2 | 1.47843 |
MA0138.2 | 0.765223 |
MA0002.2 | 0.255126 |
MA0137.2 | 0.414885 |
MA0104.2 | 0.26661 |
MA0047.2 | 0.695777 |
MA0112.2 | 1.12726 |
MA0065.2 | 0.718489 |
MA0150.1 | 0.484557 |
MA0151.1 | 0 |
MA0152.1 | 0.629368 |
MA0153.1 | 1.13732 |
MA0154.1 | 1.3291 |
MA0155.1 | 0.65596 |
MA0156.1 | 1.07131 |
MA0157.1 | 0.810597 |
MA0158.1 | 0 |
MA0159.1 | 0.328286 |
MA0160.1 | 0.600559 |
MA0161.1 | 0 |
MA0162.1 | 2.97671 |
MA0163.1 | 0.813808 |
MA0164.1 | 0.738243 |
MA0080.2 | 1.02158 |
MA0018.2 | 1.69036 |
MA0099.2 | 0.629739 |
MA0079.2 | 3.22572 |
MA0102.2 | 1.58513 |
MA0258.1 | 0.289793 |
MA0259.1 | 0.336472 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
BCL3#602 | 2 | 11.5157009345794 | 0.0116272534680164 | 0.0424801904759729 |
HDAC2#3066 | 3 | 6.70781011831313 | 0.00697394002796266 | 0.029487907796777 |
JUND#3727 | 4 | 4.66310929458068 | 0.00491764340826023 | 0.0229888438259384 |
NRF1#4899 | 3 | 6.10513972385545 | 0.00909016207939674 | 0.0344048502359251 |
POLR2A#5430 | 6 | 2.14745317655807 | 0.0101957067681878 | 0.0380187596102102 |
REST#5978 | 5 | 8.04169059677335 | 6.54774545315482e-05 | 0.00106153366560391 |
SIN3A#25942 | 5 | 4.50740393901261 | 0.00109611006120864 | 0.00765986207310597 |
SMARCA4#6597 | 2 | 52.2553011026293 | 0.000599565921574195 | 0.00500984601034381 |
SMARCB1#6598 | 3 | 9.12635789057871 | 0.00290024715036702 | 0.0156779975226284 |
SRF#6722 | 3 | 6.8985891310839 | 0.0064424516893037 | 0.0280001336653845 |
TAF1#6872 | 6 | 3.34304628574529 | 0.000716247428463562 | 0.00573080251140014 |
TAF7#6879 | 3 | 5.71653470246196 | 0.0109272937988966 | 0.0402112553138706 |
ZNF263#10127 | 4 | 5.48122775800712 | 0.00267560938060723 | 0.014745288802767 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.