FFCP PHASE1:Mm9::chr9:5299402..5299415,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=219|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:5299402..5299415,+|id=chr9:5299402..5299415,+|ontology_enrichment_celltype=CL:0000107!9.20e-18!9;CL:0000239!1.62e-13!6;CL:0000677!1.62e-13!6;CL:0000212!1.62e-13!6;CL:0000584!1.62e-13!6;CL:0002563!1.21e-11!9;CL:0002251!1.21e-11!9;CL:0000075!1.86e-11!7;CL:0000066!9.72e-09!25;CL:0000473!6.93e-08!3;CL:0000627!6.93e-08!3;CL:0000682!6.93e-08!3;CL:0002321!2.93e-07!70;CL:0000220!2.93e-07!70|ontology_enrichment_celltype_v019_2=CL:0000682,7.36e-17,3;CL:0000239,1.28e-14,6;CL:0000677,1.28e-14,6;CL:0000584,1.28e-14,6;CL:0000107,1.16e-13,9;CL:0000075,1.46e-12,7;CL:0000066,6.34e-10,25;CL:0002563,8.23e-10,9;CL:0002251,8.23e-10,9;CL:0000473,1.62e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000010!1.41e-20!11;UBERON:0000344!5.49e-20!15;UBERON:0002410!9.20e-18!9;UBERON:0001242!3.98e-16!13;UBERON:0000060!3.98e-16!13;UBERON:0001262!3.98e-16!13;UBERON:0004786!3.98e-16!13;UBERON:0000160!5.99e-15!43;UBERON:0003350!1.21e-11!9;UBERON:0004808!1.21e-11!9;UBERON:0001277!1.21e-11!9;UBERON:0004923!2.32e-11!24;UBERON:0005409!1.26e-10!59;UBERON:0000485!2.67e-09!11;UBERON:0000331!6.58e-08!3;UBERON:0002116!6.58e-08!3;UBERON:0001204!6.58e-08!3;UBERON:0001168!6.58e-08!3;UBERON:0002005!3.68e-07!3;UBERON:0005428!3.68e-07!3;UBERON:0000013!4.05e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000344,8.94e-28,15;UBERON:0001242,9.97e-20,13;UBERON:0001262,9.97e-20,13;UBERON:0004786,9.97e-20,13;UBERON:0004923,5.86e-17,24;UBERON:0000331,6.51e-17,3;UBERON:0002116,6.51e-17,3;UBERON:0001204,6.51e-17,3;UBERON:0001168,6.51e-17,3;UBERON:0002410,1.16e-13,9;UBERON:0002108,7.92e-13,4;UBERON:0001962,2.39e-11,2;UBERON:0001961,2.39e-11,2;UBERON:0001744,2.39e-11,2;UBERON:0000010,3.60e-11,11;UBERON:0003350,8.23e-10,9;UBERON:0004808,8.23e-10,9;UBERON:0001277,8.23e-10,9;UBERON:0000485,4.71e-08,11;UBERON:0000160,7.10e-08,31;UBERON:0002465,7.46e-08,3;UBERON:0000013,1.76e-07,3;UBERON:0010313,1.76e-07,3;UBERON:0002342,1.76e-07,3;UBERON:0002005,1.76e-07,3;UBERON:0005428,1.76e-07,3;UBERON:0005062,1.76e-07,3|phase1_expression=0,5.58360652222978,3.63999391511629,0.90739263392049,2.00358291978539,0.839396359559449,3.97141489012394,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,0,0,0,2.71987118748791,1.83527424853736,4.01962374880514,3.4460959692726,4.30942465371778,5.32065574477847,1.76421090831952,8.42575940490158,0,0,0,0.866554859253824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0.226714680320357,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0,0,0.264450566663544,0,0,0,0,0.22237804384487,0.380451252225118,0,0.329397909448022,0.502670417600539,0,0.779856348476481,0,0.432276099749388,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54390568381871,0,0,0,0,0,0,1.26203287766503,1.17131623288992,0.861693590931196,1.67278158566786,0.445597348164788,0.283076530788832,0.809621403349789,1.16902343164525,1.58115111178609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32977250588296,0,0.0603129249281559,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr9:5299402..5299415,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=219 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:5299402..5299415,+ | |||
|id=chr9:5299402..5299415,+ | |||
|ontology_enrichment_celltype=CL:0000107!9.20e-18!9;CL:0000239!1.62e-13!6;CL:0000677!1.62e-13!6;CL:0000212!1.62e-13!6;CL:0000584!1.62e-13!6;CL:0002563!1.21e-11!9;CL:0002251!1.21e-11!9;CL:0000075!1.86e-11!7;CL:0000066!9.72e-09!25;CL:0000473!6.93e-08!3;CL:0000627!6.93e-08!3;CL:0000682!6.93e-08!3;CL:0002321!2.93e-07!70;CL:0000220!2.93e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,7.36e-17,3;CL:0000239,1.28e-14,6;CL:0000677,1.28e-14,6;CL:0000584,1.28e-14,6;CL:0000107,1.16e-13,9;CL:0000075,1.46e-12,7;CL:0000066,6.34e-10,25;CL:0002563,8.23e-10,9;CL:0002251,8.23e-10,9;CL:0000473,1.62e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000010!1.41e-20!11;UBERON:0000344!5.49e-20!15;UBERON:0002410!9.20e-18!9;UBERON:0001242!3.98e-16!13;UBERON:0000060!3.98e-16!13;UBERON:0001262!3.98e-16!13;UBERON:0004786!3.98e-16!13;UBERON:0000160!5.99e-15!43;UBERON:0003350!1.21e-11!9;UBERON:0004808!1.21e-11!9;UBERON:0001277!1.21e-11!9;UBERON:0004923!2.32e-11!24;UBERON:0005409!1.26e-10!59;UBERON:0000485!2.67e-09!11;UBERON:0000331!6.58e-08!3;UBERON:0002116!6.58e-08!3;UBERON:0001204!6.58e-08!3;UBERON:0001168!6.58e-08!3;UBERON:0002005!3.68e-07!3;UBERON:0005428!3.68e-07!3;UBERON:0000013!4.05e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,8.94e-28,15;UBERON:0001242,9.97e-20,13;UBERON:0001262,9.97e-20,13;UBERON:0004786,9.97e-20,13;UBERON:0004923,5.86e-17,24;UBERON:0000331,6.51e-17,3;UBERON:0002116,6.51e-17,3;UBERON:0001204,6.51e-17,3;UBERON:0001168,6.51e-17,3;UBERON:0002410,1.16e-13,9;UBERON:0002108,7.92e-13,4;UBERON:0001962,2.39e-11,2;UBERON:0001961,2.39e-11,2;UBERON:0001744,2.39e-11,2;UBERON:0000010,3.60e-11,11;UBERON:0003350,8.23e-10,9;UBERON:0004808,8.23e-10,9;UBERON:0001277,8.23e-10,9;UBERON:0000485,4.71e-08,11;UBERON:0000160,7.10e-08,31;UBERON:0002465,7.46e-08,3;UBERON:0000013,1.76e-07,3;UBERON:0010313,1.76e-07,3;UBERON:0002342,1.76e-07,3;UBERON:0002005,1.76e-07,3;UBERON:0005428,1.76e-07,3;UBERON:0005062,1.76e-07,3 | |||
|phase1_expression=0,5.58360652222978,3.63999391511629,0.90739263392049,2.00358291978539,0.839396359559449,3.97141489012394,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,0,0,0,2.71987118748791,1.83527424853736,4.01962374880514,3.4460959692726,4.30942465371778,5.32065574477847,1.76421090831952,8.42575940490158,0,0,0,0.866554859253824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0.226714680320357,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0,0,0.264450566663544,0,0,0,0,0.22237804384487,0.380451252225118,0,0.329397909448022,0.502670417600539,0,0.779856348476481,0,0.432276099749388,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54390568381871,0,0,0,0,0,0,1.26203287766503,1.17131623288992,0.861693590931196,1.67278158566786,0.445597348164788,0.283076530788832,0.809621403349789,1.16902343164525,1.58115111178609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32977250588296,0,0.0603129249281559,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:5299402..5299415,+ | |||
}} |
Revision as of 18:13, 14 September 2013
Short description: | p@chr9:5299402..5299415, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:5299402..5299415, + |
Coexpression cluster: | MCL_coexpression_mm9:219 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 7.36e-17 | 3 |
brush border epithelial cell | 1.28e-14 | 6 |
gut absorptive cell | 1.28e-14 | 6 |
enterocyte | 1.28e-14 | 6 |
autonomic neuron | 1.16e-13 | 9 |
columnar/cuboidal epithelial cell | 1.46e-12 | 7 |
epithelial cell | 6.34e-10 | 25 |
intestinal epithelial cell | 8.23e-10 | 9 |
epithelial cell of alimentary canal | 8.23e-10 | 9 |
defensive cell | 1.62e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 8.94e-28 | 15 |
intestinal mucosa | 9.97e-20 | 13 |
wall of intestine | 9.97e-20 | 13 |
gastrointestinal system mucosa | 9.97e-20 | 13 |
organ component layer | 5.86e-17 | 24 |
ileal mucosa | 6.51e-17 | 3 |
ileum | 6.51e-17 | 3 |
mucosa of small intestine | 6.51e-17 | 3 |
wall of small intestine | 6.51e-17 | 3 |
autonomic nervous system | 1.16e-13 | 9 |
small intestine | 7.92e-13 | 4 |
gut-associated lymphoid tissue | 2.39e-11 | 2 |
mucosa-associated lymphoid tissue | 2.39e-11 | 2 |
lymphoid tissue | 2.39e-11 | 2 |
peripheral nervous system | 3.60e-11 | 11 |
epithelium of mucosa | 8.23e-10 | 9 |
gastrointestinal system epithelium | 8.23e-10 | 9 |
intestinal epithelium | 8.23e-10 | 9 |
simple columnar epithelium | 4.71e-08 | 11 |
intestine | 7.10e-08 | 31 |
lymphoid system | 7.46e-08 | 3 |
sympathetic nervous system | 1.76e-07 | 3 |
neural crest-derived structure | 1.76e-07 | 3 |
neural crest | 1.76e-07 | 3 |
enteric nervous system | 1.76e-07 | 3 |
vagal neural crest | 1.76e-07 | 3 |
neural fold | 1.76e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.