FFCP PHASE1:Mm9::chr7:86739877..86739895,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56315|HGNC=|MCL_coexpression_id=914|UniProt=G3UYU7|association_with_transcript=-67bp_to_ENSMUST00000172788_5end|description=CAGE_peak_2_at_Rhcg_5end|id=chr7:86739877..86739895,-|ontology_enrichment_celltype=CL:0000117!3.91e-27!23;CL:0000337!3.91e-27!23;CL:0000540!2.61e-16!33;CL:0000047!2.61e-16!33;CL:0000031!2.61e-16!33;CL:0000404!2.61e-16!33;CL:0002319!1.51e-13!43;CL:0000221!4.84e-13!44;CL:0000133!4.84e-13!44;CL:0000393!1.49e-12!39;CL:0000211!1.49e-12!39;CL:0000055!1.84e-10!50;CL:0002609!4.23e-08!6|ontology_enrichment_celltype_v019_2=CL:0000117,5.02e-42,23;CL:0000337,5.02e-42,23;CL:0000540,5.60e-28,33;CL:0000047,5.60e-28,33;CL:0000031,5.60e-28,33;CL:0000404,5.60e-28,33;CL:0000393,5.25e-23,39;CL:0000211,5.25e-23,39;CL:0002319,1.84e-20,43;CL:0000221,6.73e-20,44;CL:0000133,6.73e-20,44;CL:0002609,5.82e-12,6;CL:0002321,6.59e-11,70;CL:0000120,8.64e-10,3;CL:0002612,9.86e-10,3;CL:0002613,7.16e-09,3;CL:0000723,2.03e-07,91;CL:0000048,2.03e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.28e-26!73;UBERON:0005743!5.28e-26!73;UBERON:0001049!3.34e-25!52;UBERON:0005068!3.34e-25!52;UBERON:0006241!3.34e-25!52;UBERON:0007135!3.34e-25!52;UBERON:0002020!3.82e-25!34;UBERON:0000073!6.84e-25!75;UBERON:0001016!6.84e-25!75;UBERON:0000955!2.58e-24!50;UBERON:0006238!2.58e-24!50;UBERON:0002616!4.00e-23!49;UBERON:0003080!2.20e-22!40;UBERON:0002780!8.80e-22!39;UBERON:0001890!8.80e-22!39;UBERON:0006240!8.80e-22!39;UBERON:0002791!2.76e-19!29;UBERON:0003528!2.76e-19!29;UBERON:0001893!2.76e-19!29;UBERON:0000033!9.35e-18!63;UBERON:0003056!1.96e-17!49;UBERON:0002346!5.76e-16!71;UBERON:0003075!5.76e-16!71;UBERON:0007284!5.76e-16!71;UBERON:0004121!4.62e-15!102;UBERON:0000924!4.62e-15!102;UBERON:0006601!4.62e-15!102;UBERON:0000956!2.84e-11!21;UBERON:0001869!2.84e-11!21;UBERON:0000203!2.84e-11!21;UBERON:0007811!7.40e-10!86;UBERON:0002420!7.75e-10!8;UBERON:0007245!7.75e-10!8;UBERON:0010009!7.75e-10!8;UBERON:0010011!7.75e-10!8;UBERON:0000454!7.75e-10!8;UBERON:0000153!4.27e-08!94;UBERON:0002619!1.97e-07!17;UBERON:0001948!2.25e-07!5;UBERON:0002315!2.25e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0002020,4.67e-29,34;UBERON:0001017,3.85e-23,73;UBERON:0000073,1.13e-22,54;UBERON:0001016,2.25e-22,75;UBERON:0001049,1.78e-21,52;UBERON:0005068,1.78e-21,52;UBERON:0006241,1.78e-21,52;UBERON:0007135,1.78e-21,52;UBERON:0003528,1.97e-18,29;UBERON:0002791,1.97e-18,29;UBERON:0001893,1.97e-18,29;UBERON:0002780,8.53e-17,39;UBERON:0001890,8.53e-17,39;UBERON:0006240,8.53e-17,39;UBERON:0002346,1.53e-16,64;UBERON:0003075,1.53e-16,64;UBERON:0007284,1.53e-16,64;UBERON:0004121,1.78e-16,95;UBERON:0000924,1.78e-16,95;UBERON:0006601,1.78e-16,95;UBERON:0003080,2.78e-16,40;UBERON:0000955,2.66e-15,47;UBERON:0006238,2.66e-15,47;UBERON:0001948,1.00e-14,5;UBERON:0002315,1.00e-14,5;UBERON:0010371,6.60e-14,73;UBERON:0002616,1.14e-13,46;UBERON:0003056,1.32e-12,49;UBERON:0002240,3.26e-12,6;UBERON:0005174,3.26e-12,6;UBERON:0001137,3.26e-12,6;UBERON:0002420,3.27e-12,8;UBERON:0007245,3.27e-12,8;UBERON:0010009,3.27e-12,8;UBERON:0010011,3.27e-12,8;UBERON:0000454,3.27e-12,8;UBERON:0010314,4.84e-10,92;UBERON:0002257,9.86e-10,3;UBERON:0000956,3.86e-09,21;UBERON:0001869,3.86e-09,21;UBERON:0000203,3.86e-09,21;UBERON:0000369,6.95e-09,5;UBERON:0002435,6.95e-09,5;UBERON:0000204,6.95e-09,5;UBERON:0010082,6.95e-09,5;UBERON:0000025,3.45e-07,114|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0,0,0,3.84401275633236,4.7609188134483,5.07065122804943,0,0,0,0,0,0,0.384218305321555,2.90330914463737,4.18518408828241,2.52389953621658,4.28476476605705,1.98781686856452,2.81728838194394,2.87536413054709,0.919218786610021,2.20231761998777,0.638436690425939,0.921639199537461,1.97829431595291,2.10421580285542,3.64639359389732,0.837548997004143,5.06486349028512,3.97275444219706,7.07108605136802,8.68467252874528,2.23679334990361,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299581278809645,0.915001205637253,1.7591609295801,1.91206752211504,1.02286182932132,2.0778804455956,1.46017136760982,0,0,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,2.36680608472354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,20.8858855674175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.646793418913773,0.643011105094777,0.177340233642274,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.38097570952153,0.572895513439397,0.859265911718438,0,0,0.675022500231806,0.45032120322422,0.906284817968409,0,0.62272408550506,0.399024873401031,1.53660245178721,0.486213434136588,1.25767897576789,0,0.666740183404846,0.412070114477788,0,1.51618327058278,0.25347929989024,0.754505365544305,0.655490552289177,0.384150914429216,0.229741875822453,0.476293691283074,0.579421629724277,0.578727661391115,0.412085900803307,0.441596760403192,0,0.354951612318675,0.476872379894642,0.145346416632329,0.188218760830661,0.592302255241736,0.548783918618318,0.526139422875686,0.679020569229309,0.561142271657738,0,0.29551344712669,0.818462086339379,0,1.35034627686799,1.99848462350357,0.701794825336225,0.429742108096597,0.191288332068843,0,0|short_description=p2@Rhcg}} | ||
|EntrezGene=56315 | |||
|HGNC= | |||
|MCL_coexpression_id=914 | |||
|UniProt=G3UYU7 | |||
|association_with_transcript=-67bp_to_ENSMUST00000172788_5end | |||
|description=CAGE_peak_2_at_Rhcg_5end | |||
|id=chr7:86739877..86739895,- | |||
|ontology_enrichment_celltype=CL:0000117!3.91e-27!23;CL:0000337!3.91e-27!23;CL:0000540!2.61e-16!33;CL:0000047!2.61e-16!33;CL:0000031!2.61e-16!33;CL:0000404!2.61e-16!33;CL:0002319!1.51e-13!43;CL:0000221!4.84e-13!44;CL:0000133!4.84e-13!44;CL:0000393!1.49e-12!39;CL:0000211!1.49e-12!39;CL:0000055!1.84e-10!50;CL:0002609!4.23e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.02e-42,23;CL:0000337,5.02e-42,23;CL:0000540,5.60e-28,33;CL:0000047,5.60e-28,33;CL:0000031,5.60e-28,33;CL:0000404,5.60e-28,33;CL:0000393,5.25e-23,39;CL:0000211,5.25e-23,39;CL:0002319,1.84e-20,43;CL:0000221,6.73e-20,44;CL:0000133,6.73e-20,44;CL:0002609,5.82e-12,6;CL:0002321,6.59e-11,70;CL:0000120,8.64e-10,3;CL:0002612,9.86e-10,3;CL:0002613,7.16e-09,3;CL:0000723,2.03e-07,91;CL:0000048,2.03e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.28e-26!73;UBERON:0005743!5.28e-26!73;UBERON:0001049!3.34e-25!52;UBERON:0005068!3.34e-25!52;UBERON:0006241!3.34e-25!52;UBERON:0007135!3.34e-25!52;UBERON:0002020!3.82e-25!34;UBERON:0000073!6.84e-25!75;UBERON:0001016!6.84e-25!75;UBERON:0000955!2.58e-24!50;UBERON:0006238!2.58e-24!50;UBERON:0002616!4.00e-23!49;UBERON:0003080!2.20e-22!40;UBERON:0002780!8.80e-22!39;UBERON:0001890!8.80e-22!39;UBERON:0006240!8.80e-22!39;UBERON:0002791!2.76e-19!29;UBERON:0003528!2.76e-19!29;UBERON:0001893!2.76e-19!29;UBERON:0000033!9.35e-18!63;UBERON:0003056!1.96e-17!49;UBERON:0002346!5.76e-16!71;UBERON:0003075!5.76e-16!71;UBERON:0007284!5.76e-16!71;UBERON:0004121!4.62e-15!102;UBERON:0000924!4.62e-15!102;UBERON:0006601!4.62e-15!102;UBERON:0000956!2.84e-11!21;UBERON:0001869!2.84e-11!21;UBERON:0000203!2.84e-11!21;UBERON:0007811!7.40e-10!86;UBERON:0002420!7.75e-10!8;UBERON:0007245!7.75e-10!8;UBERON:0010009!7.75e-10!8;UBERON:0010011!7.75e-10!8;UBERON:0000454!7.75e-10!8;UBERON:0000153!4.27e-08!94;UBERON:0002619!1.97e-07!17;UBERON:0001948!2.25e-07!5;UBERON:0002315!2.25e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,4.67e-29,34;UBERON:0001017,3.85e-23,73;UBERON:0000073,1.13e-22,54;UBERON:0001016,2.25e-22,75;UBERON:0001049,1.78e-21,52;UBERON:0005068,1.78e-21,52;UBERON:0006241,1.78e-21,52;UBERON:0007135,1.78e-21,52;UBERON:0003528,1.97e-18,29;UBERON:0002791,1.97e-18,29;UBERON:0001893,1.97e-18,29;UBERON:0002780,8.53e-17,39;UBERON:0001890,8.53e-17,39;UBERON:0006240,8.53e-17,39;UBERON:0002346,1.53e-16,64;UBERON:0003075,1.53e-16,64;UBERON:0007284,1.53e-16,64;UBERON:0004121,1.78e-16,95;UBERON:0000924,1.78e-16,95;UBERON:0006601,1.78e-16,95;UBERON:0003080,2.78e-16,40;UBERON:0000955,2.66e-15,47;UBERON:0006238,2.66e-15,47;UBERON:0001948,1.00e-14,5;UBERON:0002315,1.00e-14,5;UBERON:0010371,6.60e-14,73;UBERON:0002616,1.14e-13,46;UBERON:0003056,1.32e-12,49;UBERON:0002240,3.26e-12,6;UBERON:0005174,3.26e-12,6;UBERON:0001137,3.26e-12,6;UBERON:0002420,3.27e-12,8;UBERON:0007245,3.27e-12,8;UBERON:0010009,3.27e-12,8;UBERON:0010011,3.27e-12,8;UBERON:0000454,3.27e-12,8;UBERON:0010314,4.84e-10,92;UBERON:0002257,9.86e-10,3;UBERON:0000956,3.86e-09,21;UBERON:0001869,3.86e-09,21;UBERON:0000203,3.86e-09,21;UBERON:0000369,6.95e-09,5;UBERON:0002435,6.95e-09,5;UBERON:0000204,6.95e-09,5;UBERON:0010082,6.95e-09,5;UBERON:0000025,3.45e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0,0,0,3.84401275633236,4.7609188134483,5.07065122804943,0,0,0,0,0,0,0.384218305321555,2.90330914463737,4.18518408828241,2.52389953621658,4.28476476605705,1.98781686856452,2.81728838194394,2.87536413054709,0.919218786610021,2.20231761998777,0.638436690425939,0.921639199537461,1.97829431595291,2.10421580285542,3.64639359389732,0.837548997004143,5.06486349028512,3.97275444219706,7.07108605136802,8.68467252874528,2.23679334990361,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299581278809645,0.915001205637253,1.7591609295801,1.91206752211504,1.02286182932132,2.0778804455956,1.46017136760982,0,0,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,2.36680608472354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,20.8858855674175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.646793418913773,0.643011105094777,0.177340233642274,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.38097570952153,0.572895513439397,0.859265911718438,0,0,0.675022500231806,0.45032120322422,0.906284817968409,0,0.62272408550506,0.399024873401031,1.53660245178721,0.486213434136588,1.25767897576789,0,0.666740183404846,0.412070114477788,0,1.51618327058278,0.25347929989024,0.754505365544305,0.655490552289177,0.384150914429216,0.229741875822453,0.476293691283074,0.579421629724277,0.578727661391115,0.412085900803307,0.441596760403192,0,0.354951612318675,0.476872379894642,0.145346416632329,0.188218760830661,0.592302255241736,0.548783918618318,0.526139422875686,0.679020569229309,0.561142271657738,0,0.29551344712669,0.818462086339379,0,1.35034627686799,1.99848462350357,0.701794825336225,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p2@Rhcg | |||
}} |
Revision as of 14:16, 14 September 2013
Short description: | p2@Rhcg |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rhcg_5end |
Coexpression cluster: | MCL_coexpression_mm9:914 |
Association with transcript: | -67bp_to_ENSMUST00000172788_5end |
EntrezGene: | Rhcg |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.02e-42 | 23 |
neuroblast (sensu Vertebrata) | 5.02e-42 | 23 |
neuron | 5.60e-28 | 33 |
neuronal stem cell | 5.60e-28 | 33 |
neuroblast | 5.60e-28 | 33 |
electrically signaling cell | 5.60e-28 | 33 |
electrically responsive cell | 5.25e-23 | 39 |
electrically active cell | 5.25e-23 | 39 |
neural cell | 1.84e-20 | 43 |
ectodermal cell | 6.73e-20 | 44 |
neurectodermal cell | 6.73e-20 | 44 |
neuron of cerebral cortex | 5.82e-12 | 6 |
embryonic cell | 6.59e-11 | 70 |
granule cell | 8.64e-10 | 3 |
neuron of the ventral spinal cord | 9.86e-10 | 3 |
striatum neuron | 7.16e-09 | 3 |
somatic stem cell | 2.03e-07 | 91 |
multi fate stem cell | 2.03e-07 | 91 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.