FFCP PHASE1:Mm9::chr6:78330735..78330759,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=19694|HGNC=|MCL_coexpression_id=460|UniProt=O09037,Q794C6|association_with_transcript=32bp_to_ENSMUST00000101272,NM_011259,uc009cjy.1_5end|description=CAGE_peak_2_at_Reg3a_5end|id=chr6:78330735..78330759,+|ontology_enrichment_celltype=CL:0002563!1.49e-19!9;CL:0002251!1.49e-19!9;CL:0000239!2.54e-14!6;CL:0000677!2.54e-14!6;CL:0000212!2.54e-14!6;CL:0000584!2.54e-14!6;CL:0000075!3.60e-12!7;CL:0000066!3.68e-11!25;CL:0002076!4.66e-11!15;CL:0000473!4.50e-08!3;CL:0000627!4.50e-08!3;CL:0000682!4.50e-08!3;CL:0000223!6.99e-08!20;CL:0002250!7.86e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,3.42e-18,6;CL:0000677,3.42e-18,6;CL:0000584,3.42e-18,6;CL:0002563,8.18e-16,9;CL:0002251,8.18e-16,9;CL:0000075,1.63e-15,7;CL:0000066,1.42e-10,25;CL:0000682,4.74e-10,3;CL:0002076,3.90e-09,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!7.87e-38!43;UBERON:0000344!3.59e-33!15;UBERON:0005409!4.29e-32!59;UBERON:0001242!3.00e-28!13;UBERON:0000060!3.00e-28!13;UBERON:0001262!3.00e-28!13;UBERON:0004786!3.00e-28!13;UBERON:0004923!5.89e-22!24;UBERON:0003350!1.49e-19!9;UBERON:0004808!1.49e-19!9;UBERON:0001277!1.49e-19!9;UBERON:0002108!5.64e-16!16;UBERON:0000485!1.09e-15!11;UBERON:0001007!2.03e-13!128;UBERON:0001555!2.03e-13!128;UBERON:0007026!2.03e-13!128;UBERON:0004119!4.23e-13!130;UBERON:0000925!4.23e-13!130;UBERON:0006595!4.23e-13!130;UBERON:0004921!2.38e-11!126;UBERON:0004185!2.38e-11!126;UBERON:0001264!1.04e-08!12;UBERON:0003922!1.04e-08!12;UBERON:0002114!1.04e-08!12;UBERON:0003923!1.04e-08!12;UBERON:0003924!1.04e-08!12;UBERON:0003921!1.04e-08!12;UBERON:0000331!4.50e-08!3;UBERON:0002116!4.50e-08!3;UBERON:0001204!4.50e-08!3;UBERON:0001168!4.50e-08!3;UBERON:0001045!5.86e-08!13|ontology_enrichment_uberon_v019_2=UBERON:0000344,8.31e-33,15;UBERON:0000160,3.82e-29,31;UBERON:0001242,1.21e-26,13;UBERON:0001262,1.21e-26,13;UBERON:0004786,1.21e-26,13;UBERON:0004923,1.58e-19,24;UBERON:0005409,5.88e-18,47;UBERON:0003350,8.18e-16,9;UBERON:0004808,8.18e-16,9;UBERON:0001277,8.18e-16,9;UBERON:0002108,8.80e-13,4;UBERON:0000485,8.85e-13,11;UBERON:0000331,4.74e-10,3;UBERON:0002116,4.74e-10,3;UBERON:0001204,4.74e-10,3;UBERON:0001168,4.74e-10,3;UBERON:0001962,6.90e-08,2;UBERON:0001961,6.90e-08,2;UBERON:0001744,6.90e-08,2;UBERON:0001007,7.29e-07,116;UBERON:0001555,7.29e-07,116;UBERON:0007026,7.29e-07,116|phase1_expression=0,5.93258192986914,8.18998630901165,24.8020653271601,27.0483694171027,1.6787927191189,5.13947809310157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.9189619226967,26.1526580416574,12.0588712464154,15.9381938578858,7.54149314400612,21.0925995596575,11.3413558391969,7.31710685162506,0,0,0,0.288851619751275,1.32987716286794,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,2.2836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0283098156382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.25172592354634,20.0982430664294,0,0,0,0,0,0,17.5575752771469,0,0,0,0.19496408711912,13.4822911298133,14.9135254413539,11.948476395262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98235415019888,0,0,0,0,0.307435147943927,0,1.45413491791002,0.712994756769443,24.018793603122,407.970015185245,4.12542172992747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7847909553045,0,0,0,0,0,0.136694227721025,0,0,0,0,0.954670618015114,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@Reg3a}} | ||
|EntrezGene=19694 | |||
|HGNC= | |||
|MCL_coexpression_id=460 | |||
|UniProt=O09037,Q794C6 | |||
|association_with_transcript=32bp_to_ENSMUST00000101272,NM_011259,uc009cjy.1_5end | |||
|description=CAGE_peak_2_at_Reg3a_5end | |||
|id=chr6:78330735..78330759,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.49e-19!9;CL:0002251!1.49e-19!9;CL:0000239!2.54e-14!6;CL:0000677!2.54e-14!6;CL:0000212!2.54e-14!6;CL:0000584!2.54e-14!6;CL:0000075!3.60e-12!7;CL:0000066!3.68e-11!25;CL:0002076!4.66e-11!15;CL:0000473!4.50e-08!3;CL:0000627!4.50e-08!3;CL:0000682!4.50e-08!3;CL:0000223!6.99e-08!20;CL:0002250!7.86e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,3.42e-18,6;CL:0000677,3.42e-18,6;CL:0000584,3.42e-18,6;CL:0002563,8.18e-16,9;CL:0002251,8.18e-16,9;CL:0000075,1.63e-15,7;CL:0000066,1.42e-10,25;CL:0000682,4.74e-10,3;CL:0002076,3.90e-09,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!7.87e-38!43;UBERON:0000344!3.59e-33!15;UBERON:0005409!4.29e-32!59;UBERON:0001242!3.00e-28!13;UBERON:0000060!3.00e-28!13;UBERON:0001262!3.00e-28!13;UBERON:0004786!3.00e-28!13;UBERON:0004923!5.89e-22!24;UBERON:0003350!1.49e-19!9;UBERON:0004808!1.49e-19!9;UBERON:0001277!1.49e-19!9;UBERON:0002108!5.64e-16!16;UBERON:0000485!1.09e-15!11;UBERON:0001007!2.03e-13!128;UBERON:0001555!2.03e-13!128;UBERON:0007026!2.03e-13!128;UBERON:0004119!4.23e-13!130;UBERON:0000925!4.23e-13!130;UBERON:0006595!4.23e-13!130;UBERON:0004921!2.38e-11!126;UBERON:0004185!2.38e-11!126;UBERON:0001264!1.04e-08!12;UBERON:0003922!1.04e-08!12;UBERON:0002114!1.04e-08!12;UBERON:0003923!1.04e-08!12;UBERON:0003924!1.04e-08!12;UBERON:0003921!1.04e-08!12;UBERON:0000331!4.50e-08!3;UBERON:0002116!4.50e-08!3;UBERON:0001204!4.50e-08!3;UBERON:0001168!4.50e-08!3;UBERON:0001045!5.86e-08!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,8.31e-33,15;UBERON:0000160,3.82e-29,31;UBERON:0001242,1.21e-26,13;UBERON:0001262,1.21e-26,13;UBERON:0004786,1.21e-26,13;UBERON:0004923,1.58e-19,24;UBERON:0005409,5.88e-18,47;UBERON:0003350,8.18e-16,9;UBERON:0004808,8.18e-16,9;UBERON:0001277,8.18e-16,9;UBERON:0002108,8.80e-13,4;UBERON:0000485,8.85e-13,11;UBERON:0000331,4.74e-10,3;UBERON:0002116,4.74e-10,3;UBERON:0001204,4.74e-10,3;UBERON:0001168,4.74e-10,3;UBERON:0001962,6.90e-08,2;UBERON:0001961,6.90e-08,2;UBERON:0001744,6.90e-08,2;UBERON:0001007,7.29e-07,116;UBERON:0001555,7.29e-07,116;UBERON:0007026,7.29e-07,116 | |||
|phase1_expression=0,5.93258192986914,8.18998630901165,24.8020653271601,27.0483694171027,1.6787927191189,5.13947809310157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.9189619226967,26.1526580416574,12.0588712464154,15.9381938578858,7.54149314400612,21.0925995596575,11.3413558391969,7.31710685162506,0,0,0,0.288851619751275,1.32987716286794,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,2.2836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0283098156382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.25172592354634,20.0982430664294,0,0,0,0,0,0,17.5575752771469,0,0,0,0.19496408711912,13.4822911298133,14.9135254413539,11.948476395262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98235415019888,0,0,0,0,0.307435147943927,0,1.45413491791002,0.712994756769443,24.018793603122,407.970015185245,4.12542172992747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7847909553045,0,0,0,0,0,0.136694227721025,0,0,0,0,0.954670618015114,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@Reg3a | |||
}} |
Revision as of 10:39, 14 September 2013
Short description: | p2@Reg3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Reg3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:460 |
Association with transcript: | 32bp_to_ENSMUST00000101272, NM_011259, uc009cjy.1_5end |
EntrezGene: | Reg3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 3.42e-18 | 6 |
gut absorptive cell | 3.42e-18 | 6 |
enterocyte | 3.42e-18 | 6 |
intestinal epithelial cell | 8.18e-16 | 9 |
epithelial cell of alimentary canal | 8.18e-16 | 9 |
columnar/cuboidal epithelial cell | 1.63e-15 | 7 |
epithelial cell | 1.42e-10 | 25 |
M cell of gut | 4.74e-10 | 3 |
endo-epithelial cell | 3.90e-09 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 8.31e-33 | 15 |
intestine | 3.82e-29 | 31 |
intestinal mucosa | 1.21e-26 | 13 |
wall of intestine | 1.21e-26 | 13 |
gastrointestinal system mucosa | 1.21e-26 | 13 |
organ component layer | 1.58e-19 | 24 |
gastrointestinal system | 5.88e-18 | 47 |
epithelium of mucosa | 8.18e-16 | 9 |
gastrointestinal system epithelium | 8.18e-16 | 9 |
intestinal epithelium | 8.18e-16 | 9 |
small intestine | 8.80e-13 | 4 |
simple columnar epithelium | 8.85e-13 | 11 |
ileal mucosa | 4.74e-10 | 3 |
ileum | 4.74e-10 | 3 |
mucosa of small intestine | 4.74e-10 | 3 |
wall of small intestine | 4.74e-10 | 3 |
gut-associated lymphoid tissue | 6.90e-08 | 2 |
mucosa-associated lymphoid tissue | 6.90e-08 | 2 |
lymphoid tissue | 6.90e-08 | 2 |
digestive system | 7.29e-07 | 116 |
digestive tract | 7.29e-07 | 116 |
primitive gut | 7.29e-07 | 116 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.