FFCP PHASE1:Mm9::chr5:8660605..8660623,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:8660605..8660623,+|id=chr5:8660605..8660623,+|ontology_enrichment_celltype=CL:0002563!6.34e-14!9;CL:0002251!6.34e-14!9;CL:0000239!1.48e-10!6;CL:0000677!1.48e-10!6;CL:0000212!1.48e-10!6;CL:0000584!1.48e-10!6;CL:0000063!4.19e-09!66;CL:0000075!6.95e-09!7;CL:0000066!1.70e-08!25;CL:0002076!1.74e-07!15;CL:0000791!4.83e-07!9;CL:0000789!4.83e-07!9;CL:0002420!4.83e-07!9;CL:0002419!4.83e-07!9;CL:0000790!4.83e-07!9|ontology_enrichment_celltype_v019_2=CL:0000239,2.29e-20,6;CL:0000677,2.29e-20,6;CL:0000584,2.29e-20,6;CL:0000075,2.23e-17,7;CL:0002563,2.18e-13,9;CL:0002251,2.18e-13,9;CL:0000682,2.33e-11,3;CL:0000066,6.89e-10,25;CL:0002076,8.70e-08,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!2.08e-23!15;UBERON:0001242!4.67e-20!13;UBERON:0000060!4.67e-20!13;UBERON:0001262!4.67e-20!13;UBERON:0004786!4.67e-20!13;UBERON:0004923!1.70e-16!24;UBERON:0000160!6.59e-16!43;UBERON:0003350!6.34e-14!9;UBERON:0004808!6.34e-14!9;UBERON:0001277!6.34e-14!9;UBERON:0005409!7.00e-13!59;UBERON:0000485!5.49e-11!11;UBERON:0004119!5.36e-07!130;UBERON:0000925!5.36e-07!130;UBERON:0006595!5.36e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.19e-31,15;UBERON:0000160,6.70e-28,31;UBERON:0001242,4.39e-25,13;UBERON:0001262,4.39e-25,13;UBERON:0004786,4.39e-25,13;UBERON:0005409,1.34e-19,47;UBERON:0004923,6.64e-19,24;UBERON:0002108,3.94e-14,4;UBERON:0003350,2.18e-13,9;UBERON:0004808,2.18e-13,9;UBERON:0001277,2.18e-13,9;UBERON:0000331,2.73e-11,3;UBERON:0002116,2.73e-11,3;UBERON:0001204,2.73e-11,3;UBERON:0001168,2.73e-11,3;UBERON:0000485,7.63e-11,11;UBERON:0001962,1.73e-08,2;UBERON:0001961,1.73e-08,2;UBERON:0001744,1.73e-08,2;UBERON:0001007,8.09e-08,116;UBERON:0001555,8.09e-08,116;UBERON:0007026,8.09e-08,116;UBERON:0004119,1.28e-07,118;UBERON:0000925,1.28e-07,118;UBERON:0006595,1.28e-07,118|phase1_expression=0,20.9385244583617,19.1099680543605,1.81478526784098,3.00537437967808,6.5472916045637,4.67225281191051,1.16210991097419,0.281577444303333,0.936258105287974,0.34243593645101,0.0797721589953364,0,0,0,0.202475267389826,0.699561878128147,0.315462165358238,0.548457734422955,0.84877930359606,0,0,0,19.3590831580022,23.1703373877842,14.9300310669905,9.04600191934057,11.635446565038,10.8313349090133,6.30075324399827,15.5211357458713,0,0,0,0.866554859253824,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335565212115473,1.45072428402269,1.68046899571232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0.579728977403356,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0.776813650941515,0.29688427812965,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83185582812887,0,0,0,0,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63460661282178,1.05780226665418,0,0,0,0.201683524623343,0,0,2.37264530772256,0.658795818896044,0,0.596869416123452,0.58489226135736,2.69645822596266,1.08069024937347,1.99141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404810701674894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.63549621259146,0,0,0,0,0,0,2.33184669303881,0,0,0,0,0,0,0.228778173206523,0.679913719975421,0.279902904647316,0.414599921413271,0,0,0,0.108005340821801,0,0,0,0,0,4.01806417204558,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0.221985953374065,0,0.167884616364078,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr5:8660605..8660623,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:8660605..8660623,+ | |||
|id=chr5:8660605..8660623,+ | |||
|ontology_enrichment_celltype=CL:0002563!6.34e-14!9;CL:0002251!6.34e-14!9;CL:0000239!1.48e-10!6;CL:0000677!1.48e-10!6;CL:0000212!1.48e-10!6;CL:0000584!1.48e-10!6;CL:0000063!4.19e-09!66;CL:0000075!6.95e-09!7;CL:0000066!1.70e-08!25;CL:0002076!1.74e-07!15;CL:0000791!4.83e-07!9;CL:0000789!4.83e-07!9;CL:0002420!4.83e-07!9;CL:0002419!4.83e-07!9;CL:0000790!4.83e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.29e-20,6;CL:0000677,2.29e-20,6;CL:0000584,2.29e-20,6;CL:0000075,2.23e-17,7;CL:0002563,2.18e-13,9;CL:0002251,2.18e-13,9;CL:0000682,2.33e-11,3;CL:0000066,6.89e-10,25;CL:0002076,8.70e-08,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!2.08e-23!15;UBERON:0001242!4.67e-20!13;UBERON:0000060!4.67e-20!13;UBERON:0001262!4.67e-20!13;UBERON:0004786!4.67e-20!13;UBERON:0004923!1.70e-16!24;UBERON:0000160!6.59e-16!43;UBERON:0003350!6.34e-14!9;UBERON:0004808!6.34e-14!9;UBERON:0001277!6.34e-14!9;UBERON:0005409!7.00e-13!59;UBERON:0000485!5.49e-11!11;UBERON:0004119!5.36e-07!130;UBERON:0000925!5.36e-07!130;UBERON:0006595!5.36e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.19e-31,15;UBERON:0000160,6.70e-28,31;UBERON:0001242,4.39e-25,13;UBERON:0001262,4.39e-25,13;UBERON:0004786,4.39e-25,13;UBERON:0005409,1.34e-19,47;UBERON:0004923,6.64e-19,24;UBERON:0002108,3.94e-14,4;UBERON:0003350,2.18e-13,9;UBERON:0004808,2.18e-13,9;UBERON:0001277,2.18e-13,9;UBERON:0000331,2.73e-11,3;UBERON:0002116,2.73e-11,3;UBERON:0001204,2.73e-11,3;UBERON:0001168,2.73e-11,3;UBERON:0000485,7.63e-11,11;UBERON:0001962,1.73e-08,2;UBERON:0001961,1.73e-08,2;UBERON:0001744,1.73e-08,2;UBERON:0001007,8.09e-08,116;UBERON:0001555,8.09e-08,116;UBERON:0007026,8.09e-08,116;UBERON:0004119,1.28e-07,118;UBERON:0000925,1.28e-07,118;UBERON:0006595,1.28e-07,118 | |||
|phase1_expression=0,20.9385244583617,19.1099680543605,1.81478526784098,3.00537437967808,6.5472916045637,4.67225281191051,1.16210991097419,0.281577444303333,0.936258105287974,0.34243593645101,0.0797721589953364,0,0,0,0.202475267389826,0.699561878128147,0.315462165358238,0.548457734422955,0.84877930359606,0,0,0,19.3590831580022,23.1703373877842,14.9300310669905,9.04600191934057,11.635446565038,10.8313349090133,6.30075324399827,15.5211357458713,0,0,0,0.866554859253824,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335565212115473,1.45072428402269,1.68046899571232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0.579728977403356,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0.776813650941515,0.29688427812965,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83185582812887,0,0,0,0,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63460661282178,1.05780226665418,0,0,0,0.201683524623343,0,0,2.37264530772256,0.658795818896044,0,0.596869416123452,0.58489226135736,2.69645822596266,1.08069024937347,1.99141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404810701674894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.63549621259146,0,0,0,0,0,0,2.33184669303881,0,0,0,0,0,0,0.228778173206523,0.679913719975421,0.279902904647316,0.414599921413271,0,0,0,0.108005340821801,0,0,0,0,0,4.01806417204558,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0.221985953374065,0,0.167884616364078,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:8660605..8660623,+ | |||
}} |
Revision as of 08:07, 14 September 2013
Short description: | p@chr5:8660605..8660623, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:8660605..8660623, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.29e-20 | 6 |
gut absorptive cell | 2.29e-20 | 6 |
enterocyte | 2.29e-20 | 6 |
columnar/cuboidal epithelial cell | 2.23e-17 | 7 |
intestinal epithelial cell | 2.18e-13 | 9 |
epithelial cell of alimentary canal | 2.18e-13 | 9 |
M cell of gut | 2.33e-11 | 3 |
epithelial cell | 6.89e-10 | 25 |
endo-epithelial cell | 8.70e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.19e-31 | 15 |
intestine | 6.70e-28 | 31 |
intestinal mucosa | 4.39e-25 | 13 |
wall of intestine | 4.39e-25 | 13 |
gastrointestinal system mucosa | 4.39e-25 | 13 |
gastrointestinal system | 1.34e-19 | 47 |
organ component layer | 6.64e-19 | 24 |
small intestine | 3.94e-14 | 4 |
epithelium of mucosa | 2.18e-13 | 9 |
gastrointestinal system epithelium | 2.18e-13 | 9 |
intestinal epithelium | 2.18e-13 | 9 |
ileal mucosa | 2.73e-11 | 3 |
ileum | 2.73e-11 | 3 |
mucosa of small intestine | 2.73e-11 | 3 |
wall of small intestine | 2.73e-11 | 3 |
simple columnar epithelium | 7.63e-11 | 11 |
gut-associated lymphoid tissue | 1.73e-08 | 2 |
mucosa-associated lymphoid tissue | 1.73e-08 | 2 |
lymphoid tissue | 1.73e-08 | 2 |
digestive system | 8.09e-08 | 116 |
digestive tract | 8.09e-08 | 116 |
primitive gut | 8.09e-08 | 116 |
endoderm-derived structure | 1.28e-07 | 118 |
endoderm | 1.28e-07 | 118 |
presumptive endoderm | 1.28e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.