FFCP PHASE1:Hg19::chr9:137620587..137620603,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C396|description=CAGE_peak_at_chr9:137620587..137620603,+|id=chr9:137620587..137620603,+|ontology_enrichment_celltype=CL:0000055!3.72e-29!180;CL:0000057!1.08e-19!75;CL:0002334!1.02e-08!12;CL:0000144!5.64e-08!625;CL:0002371!1.50e-07!591;CL:0000048!1.70e-07!430;CL:0000183!2.06e-07!59;CL:0000680!2.27e-07!57;CL:0000056!2.27e-07!57;CL:0000355!2.27e-07!57;CL:0000187!6.59e-07!54;CL:0000034!7.61e-07!444;CL:0000723!7.89e-07!436;CL:0002620!8.79e-07!23|ontology_enrichment_celltype_v019=CL:0000349;1.21e-25;19!CL:0002569;2.55e-11;6!CL:0000134;1.41e-09;55!CL:0002334;4.35e-09;12!CL:0000048;7.20e-08;58!CL:0002580;3.03e-07;3!CL:0002577;3.42e-07;3!CL:0000057;4.07e-07;73|ontology_enrichment_celltype_v019_2=CL:0000349,4.37e-26,19;CL:0000057,2.00e-16,76;CL:0002569,1.51e-11,6;CL:0002320,2.44e-09,361;CL:0002334,3.45e-09,12;CL:0000048,7.80e-09,427;CL:0000134,9.09e-09,354;CL:0000723,1.90e-08,433;CL:0000034,5.93e-08,441;CL:0002580,2.45e-07,3;CL:0002577,3.06e-07,3;CL:0000219,5.45e-07,386|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000478!1.54e-11!24;UBERON:0005631!2.50e-09!14;UBERON:0000158!2.50e-09!14;UBERON:0000914!1.64e-08!83;UBERON:0002329!1.64e-08!83;UBERON:0003077!1.64e-08!83;UBERON:0003059!1.64e-08!83;UBERON:0007282!1.64e-08!83;UBERON:0009618!1.64e-08!83;UBERON:0007285!1.64e-08!83;UBERON:0002385!2.54e-08!63;UBERON:0001015!2.54e-08!63;UBERON:0000383!2.54e-08!63;UBERON:0001134!4.41e-08!61;UBERON:0002036!4.41e-08!61;UBERON:0003082!4.41e-08!61;UBERON:0004290!1.70e-07!70|ontology_enrichment_uberon_v019=UBERON:0000478;8.13e-22;24!UBERON:0003104;1.21e-12;7!UBERON:0009142;1.21e-12;7!UBERON:0003422;2.55e-11;6!UBERON:0005631;6.23e-11;10!UBERON:0000158;6.23e-11;10!UBERON:0002331;1.11e-08;10!UBERON:0001013;2.60e-07;14!UBERON:0003688;4.04e-07;6!UBERON:0002358;4.04e-07;6!UBERON:0003684;4.04e-07;6!UBERON:0001178;4.04e-07;6!UBERON:0000305;9.76e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0000478,3.67e-22,24;UBERON:0005631,5.70e-15,14;UBERON:0000158,5.70e-15,14;UBERON:0003422,1.51e-11,6;UBERON:0003124,4.24e-10,7;UBERON:0004923,1.16e-09,66;UBERON:0002384,3.72e-09,371;UBERON:0002331,8.06e-09,10;UBERON:0000358,8.06e-09,10;UBERON:0000307,8.06e-09,10;UBERON:0000091,8.06e-09,10;UBERON:0000087,8.06e-09,10;UBERON:0007010,8.06e-09,10;UBERON:0007806,8.06e-09,10;UBERON:0008780,8.06e-09,10;UBERON:0005728,8.06e-09,10;UBERON:0004871,5.11e-08,8;UBERON:0001013,2.71e-07,14;UBERON:0003688,4.61e-07,6;UBERON:0002358,4.61e-07,6;UBERON:0003684,4.61e-07,6;UBERON:0001178,4.61e-07,6|phase1_expression=1.81678379270557,3.21150785836475,1.83240725324762,1.0007329835313,0.446961094427288,1.74467704820074,5.06599756336621,1.26343974685366,0.522371256399677,0,0,1.52908960491121,4.22027165165526,0.247532705920093,0.331397375727916,0.672325146451775,0,1.46062018077475,0,0.246242116153576,0,1.25381888591235,0,0.136874425072884,0.627713197974014,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0.722878304769133,0.50133791063589,3.0417768981773,3.9764297352555,6.32625331393427,0.189069634328136,0.886917589850256,0.527008714158756,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0.550236083880135,0.417989933073621,0,0.35576626268671,0,0,0,0,0.367663080345869,3.24056779152704,0,0,0,0,0,0.366403487860815,0,0,0,2.48485975847659,1.64619665163954,0.662045904066094,9.17877186396204,1.06400514659507,1.68203280042692,1.06748995729705,4.68668341992604,0,0.942974704487816,0,0.302714855289863,4.03323147135999,0.234321431833797,0,0,0.448346041655403,0,0.161872944368132,0.140450806702248,0.204154171254893,0,0.413303124703062,1.18800285728205,1.7308685049499,0.910161361938026,1.43723628363248,0,0.375355559615893,0,0.438977620880838,0.612975591598039,1.20190447125277,0.226864366320042,4.84352016359927,1.70845911054854,0.635795703478686,3.00091096084402,0.412210116953756,3.60696756063881,0.558350568994769,1.68776332241266,1.07180705677318,4.29137416214995,1.10459878370759,1.13152239773168,4.26011511019937,0.806016785821122,0.508681776931463,0,0,0,0.121973706129595,0,0.348581828608555,0.10366105501537,0.252320850875628,0,0,2.57296375277154,0,0,0,0.354920400119532,0.337169380156203,0.723033089650446,0.110293972732394,1.08939722046203,0.474541238222193,0.269662616320329,0,0.769494313892781,0,0,0.8231480226628,4.41026134156626,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,0,0.115930404975077,0.70445216541493,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.22001485746285,1.8098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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C396 | |||
|description=CAGE_peak_at_chr9:137620587..137620603,+ | |||
|id=chr9:137620587..137620603,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.72e-29!180;CL:0000057!1.08e-19!75;CL:0002334!1.02e-08!12;CL:0000144!5.64e-08!625;CL:0002371!1.50e-07!591;CL:0000048!1.70e-07!430;CL:0000183!2.06e-07!59;CL:0000680!2.27e-07!57;CL:0000056!2.27e-07!57;CL:0000355!2.27e-07!57;CL:0000187!6.59e-07!54;CL:0000034!7.61e-07!444;CL:0000723!7.89e-07!436;CL:0002620!8.79e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.21e-25;19!CL:0002569;2.55e-11;6!CL:0000134;1.41e-09;55!CL:0002334;4.35e-09;12!CL:0000048;7.20e-08;58!CL:0002580;3.03e-07;3!CL:0002577;3.42e-07;3!CL:0000057;4.07e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,4.37e-26,19;CL:0000057,2.00e-16,76;CL:0002569,1.51e-11,6;CL:0002320,2.44e-09,361;CL:0002334,3.45e-09,12;CL:0000048,7.80e-09,427;CL:0000134,9.09e-09,354;CL:0000723,1.90e-08,433;CL:0000034,5.93e-08,441;CL:0002580,2.45e-07,3;CL:0002577,3.06e-07,3;CL:0000219,5.45e-07,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000478!1.54e-11!24;UBERON:0005631!2.50e-09!14;UBERON:0000158!2.50e-09!14;UBERON:0000914!1.64e-08!83;UBERON:0002329!1.64e-08!83;UBERON:0003077!1.64e-08!83;UBERON:0003059!1.64e-08!83;UBERON:0007282!1.64e-08!83;UBERON:0009618!1.64e-08!83;UBERON:0007285!1.64e-08!83;UBERON:0002385!2.54e-08!63;UBERON:0001015!2.54e-08!63;UBERON:0000383!2.54e-08!63;UBERON:0001134!4.41e-08!61;UBERON:0002036!4.41e-08!61;UBERON:0003082!4.41e-08!61;UBERON:0004290!1.70e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.13e-22;24!UBERON:0003104;1.21e-12;7!UBERON:0009142;1.21e-12;7!UBERON:0003422;2.55e-11;6!UBERON:0005631;6.23e-11;10!UBERON:0000158;6.23e-11;10!UBERON:0002331;1.11e-08;10!UBERON:0001013;2.60e-07;14!UBERON:0003688;4.04e-07;6!UBERON:0002358;4.04e-07;6!UBERON:0003684;4.04e-07;6!UBERON:0001178;4.04e-07;6!UBERON:0000305;9.76e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000478,3.67e-22,24;UBERON:0005631,5.70e-15,14;UBERON:0000158,5.70e-15,14;UBERON:0003422,1.51e-11,6;UBERON:0003124,4.24e-10,7;UBERON:0004923,1.16e-09,66;UBERON:0002384,3.72e-09,371;UBERON:0002331,8.06e-09,10;UBERON:0000358,8.06e-09,10;UBERON:0000307,8.06e-09,10;UBERON:0000091,8.06e-09,10;UBERON:0000087,8.06e-09,10;UBERON:0007010,8.06e-09,10;UBERON:0007806,8.06e-09,10;UBERON:0008780,8.06e-09,10;UBERON:0005728,8.06e-09,10;UBERON:0004871,5.11e-08,8;UBERON:0001013,2.71e-07,14;UBERON:0003688,4.61e-07,6;UBERON:0002358,4.61e-07,6;UBERON:0003684,4.61e-07,6;UBERON:0001178,4.61e-07,6 | |||
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| |||
|short_description=p@chr9:137620587..137620603,+ | |||
}} |
Revision as of 08:06, 14 September 2013
Short description: | p@chr9:137620587..137620603, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:137620587..137620603, + |
Coexpression cluster: | C396_Mesenchymal_Chondrocyte_Smooth_Preadipocyte_Placental_Fibroblast_Hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 4.37e-26 | 19 |
fibroblast | 2.00e-16 | 76 |
mesenchymal stem cell of umbilical cord | 1.51e-11 | 6 |
connective tissue cell | 2.44e-09 | 361 |
preadipocyte | 3.45e-09 | 12 |
multi fate stem cell | 7.80e-09 | 427 |
mesenchymal cell | 9.09e-09 | 354 |
somatic stem cell | 1.90e-08 | 433 |
stem cell | 5.93e-08 | 441 |
preadipocyte of the breast | 2.45e-07 | 3 |
placental epithelial cell | 3.06e-07 | 3 |
motile cell | 5.45e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
extraembryonic structure | 3.67e-22 | 24 |
extraembryonic membrane | 5.70e-15 | 14 |
membranous layer | 5.70e-15 | 14 |
mesenchyme of umbilical cord | 1.51e-11 | 6 |
chorion | 4.24e-10 | 7 |
organ component layer | 1.16e-09 | 66 |
connective tissue | 3.72e-09 | 371 |
umbilical cord | 8.06e-09 | 10 |
blastocyst | 8.06e-09 | 10 |
blastula | 8.06e-09 | 10 |
bilaminar disc | 8.06e-09 | 10 |
inner cell mass | 8.06e-09 | 10 |
cleaving embryo | 8.06e-09 | 10 |
connecting stalk | 8.06e-09 | 10 |
inner cell mass derived epiblast | 8.06e-09 | 10 |
extraembryonic mesoderm | 8.06e-09 | 10 |
somatic layer of lateral plate mesoderm | 5.11e-08 | 8 |
adipose tissue | 2.71e-07 | 14 |
omentum | 4.61e-07 | 6 |
peritoneum | 4.61e-07 | 6 |
abdominal cavity | 4.61e-07 | 6 |
visceral peritoneum | 4.61e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.