FFCP PHASE1:Hg19::chr8:82644669..82644738,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=92421|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30599|TSSclassifier=S|UniProt=Q96CF2|association_with_transcript=0bp_to_ENST00000297265,NM_152284,uc003ycl.2_5end|coexpression_cluster_id=C2015|description=CAGE_peak_1_at_CHMP4C_5end|id=chr8:82644669..82644738,+|ontology_enrichment_celltype=CL:0000066!2.98e-41!254;CL:0000223!6.98e-18!59;CL:0002076!1.96e-16!43;CL:0002251!1.28e-08!21|ontology_enrichment_celltype_v019=CL:0002076;3.28e-14;42!CL:0002251;2.85e-10;20!CL:0000082;4.60e-07;19!CL:0002368;5.48e-07;13|ontology_enrichment_celltype_v019_2=CL:0000066,3.60e-46,253;CL:0000223,1.36e-21,58;CL:0002076,2.45e-19,42;CL:0002251,2.83e-10,20;CL:0000082,4.32e-07,19;CL:0002368,5.26e-07,13|ontology_enrichment_development_v019=UBERON:0008947;3.05e-12;29!CL:0000223;9.52e-12;58!UBERON:0006595;2.76e-11;86!UBERON:0001041;5.78e-09;30|ontology_enrichment_disease=DOID:305!9.46e-35!106;DOID:0050687!1.90e-25!143;DOID:162!1.91e-12!235;DOID:14566!1.10e-11!239;DOID:299!4.03e-11!25;DOID:1749!6.01e-08!14|ontology_enrichment_disease_v019=DOID:299;9.20e-13;25!DOID:305;1.10e-11;106!DOID:1749;3.46e-09;14|ontology_enrichment_disease_v019_2=DOID:305,3.71e-39,106;DOID:0050687,3.20e-30,143;DOID:162,3.92e-15,235;DOID:14566,2.79e-14,239;DOID:299,7.56e-13,25;DOID:1749,3.49e-09,14|ontology_enrichment_uberon=UBERON:0004119!2.85e-29!169;UBERON:0000925!2.85e-29!169;UBERON:0006595!2.85e-29!169;UBERON:0001007!2.00e-24!155;UBERON:0001555!2.00e-24!155;UBERON:0007026!2.00e-24!155;UBERON:0004921!2.72e-23!129;UBERON:0004185!2.72e-23!129;UBERON:0000077!3.76e-21!130;UBERON:0001041!9.10e-18!98;UBERON:0001004!2.53e-15!72;UBERON:0000062!1.72e-14!511;UBERON:0000466!2.18e-14!126;UBERON:0001048!8.27e-14!168;UBERON:0000464!5.59e-13!104;UBERON:0005911!1.64e-12!82;UBERON:0000065!8.74e-12!53;UBERON:0008947!2.67e-11!38;UBERON:0003258!2.67e-11!38;UBERON:0005177!3.74e-11!107;UBERON:0000481!3.93e-10!347;UBERON:0000922!1.70e-09!612;UBERON:0000072!3.09e-09!46;UBERON:0000468!3.27e-09!659;UBERON:0005153!3.86e-09!37;UBERON:0005409!4.05e-09!35;UBERON:0002050!1.87e-08!605;UBERON:0005423!1.87e-08!605;UBERON:0003104!2.42e-08!238;UBERON:0009142!2.42e-08!238;UBERON:0000923!3.23e-08!604;UBERON:0005291!3.23e-08!604;UBERON:0006598!3.23e-08!604;UBERON:0002532!3.23e-08!604;UBERON:0000064!3.67e-08!219;UBERON:0005157!5.70e-08!51;UBERON:0000063!6.11e-08!97;UBERON:0000480!8.34e-08!626;UBERON:0002553!9.27e-08!70;UBERON:0000467!9.99e-08!625;UBERON:0005156!1.44e-07!59;UBERON:0000990!1.44e-07!59;UBERON:0000160!2.46e-07!27;UBERON:0002048!3.75e-07!22;UBERON:0000117!3.75e-07!22;UBERON:0000171!3.75e-07!22;UBERON:0000170!3.75e-07!22;UBERON:0005597!3.75e-07!22;UBERON:0000118!3.75e-07!22;UBERON:0009569!5.70e-07!113;UBERON:0003133!8.19e-07!48|ontology_enrichment_uberon_v019=UBERON:0000065;1.49e-10;44!UBERON:0001004;1.24e-09;65!UBERON:0004921;2.17e-09;33!UBERON:0000072;3.46e-09;37!UBERON:0004807;1.52e-08;22!UBERON:0002048;6.22e-08;22!UBERON:0000117;6.22e-08;22!UBERON:0000171;6.22e-08;22!UBERON:0000170;6.22e-08;22!UBERON:0004802;4.60e-07;19!UBERON:0000115;4.60e-07;19!UBERON:0005911;4.88e-07;36!UBERON:0005178;8.39e-07;34!UBERON:0002224;8.39e-07;34!UBERON:0005181;8.75e-07;35|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.78e-28,160;UBERON:0000925,1.78e-28,160;UBERON:0006595,1.78e-28,160;UBERON:0001007,1.81e-23,145;UBERON:0001555,1.81e-23,145;UBERON:0007026,1.81e-23,145;UBERON:0004921,8.07e-23,118;UBERON:0001041,6.50e-18,87;UBERON:0001004,1.56e-16,74;UBERON:0005177,1.62e-14,101;UBERON:0005911,3.94e-13,82;UBERON:0008947,4.38e-13,38;UBERON:0003258,4.38e-13,38;UBERON:0000065,8.70e-13,54;UBERON:0001048,1.97e-11,160;UBERON:0000072,6.88e-10,47;UBERON:0005153,1.18e-09,37;UBERON:0001008,2.09e-08,48;UBERON:0006554,3.53e-08,47;UBERON:0005157,4.77e-08,47;UBERON:0009569,5.27e-08,112;UBERON:0002048,5.80e-08,22;UBERON:0000117,5.80e-08,22;UBERON:0000171,5.80e-08,22;UBERON:0000170,5.80e-08,22;UBERON:0005597,5.80e-08,22;UBERON:0000118,5.80e-08,22;UBERON:0005156,5.81e-08,59;UBERON:0000990,5.81e-08,59;UBERON:0005181,9.14e-08,35;UBERON:0005178,1.02e-07,34;UBERON:0002224,1.02e-07,34;UBERON:0003133,1.58e-07,48;UBERON:0004175,3.04e-07,25;UBERON:0004802,4.32e-07,19;UBERON:0000115,4.32e-07,19;UBERON:0002553,5.88e-07,61;UBERON:0003100,9.71e-07,41|phase1_expression=0,0,0,0,0,0,0,0,0,4.17747692052565,4.18680700783456,6.55324116390517,11.8695140202804,0,0.331397375727916,0.672325146451775,0,0,0,0.369363174230364,0.816002764977012,0.313454721478088,0.286235987131057,1.09499540058307,1.38096903554283,3.43860325865781,2.70931945184821,2.91229890860613,0,0,0.464448369948228,13.7913183671839,5.72291245678675,6.65557218300218,0,0,1.76160263600908,0,0,0,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,2.8769239232215,3.33008918487831,0.236482229888585,0,0,0,0,0,0,0,0,0,3.62836430205388,4.3882004676759,1.70489900213078,0,0,0,2.00998932205395,3.12889751052121,0.868755378820466,1.21079900526674,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,3.9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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=92421 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30599 | |||
|TSSclassifier=S | |||
|UniProt=Q96CF2 | |||
|association_with_transcript=0bp_to_ENST00000297265,NM_152284,uc003ycl.2_5end | |||
|coexpression_cluster_id=C2015 | |||
|description=CAGE_peak_1_at_CHMP4C_5end | |||
|id=chr8:82644669..82644738,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.98e-41!254;CL:0000223!6.98e-18!59;CL:0002076!1.96e-16!43;CL:0002251!1.28e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.28e-14;42!CL:0002251;2.85e-10;20!CL:0000082;4.60e-07;19!CL:0002368;5.48e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.60e-46,253;CL:0000223,1.36e-21,58;CL:0002076,2.45e-19,42;CL:0002251,2.83e-10,20;CL:0000082,4.32e-07,19;CL:0002368,5.26e-07,13 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.05e-12;29!CL:0000223;9.52e-12;58!UBERON:0006595;2.76e-11;86!UBERON:0001041;5.78e-09;30 | |||
|ontology_enrichment_disease=DOID:305!9.46e-35!106;DOID:0050687!1.90e-25!143;DOID:162!1.91e-12!235;DOID:14566!1.10e-11!239;DOID:299!4.03e-11!25;DOID:1749!6.01e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:299;9.20e-13;25!DOID:305;1.10e-11;106!DOID:1749;3.46e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.71e-39,106;DOID:0050687,3.20e-30,143;DOID:162,3.92e-15,235;DOID:14566,2.79e-14,239;DOID:299,7.56e-13,25;DOID:1749,3.49e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.85e-29!169;UBERON:0000925!2.85e-29!169;UBERON:0006595!2.85e-29!169;UBERON:0001007!2.00e-24!155;UBERON:0001555!2.00e-24!155;UBERON:0007026!2.00e-24!155;UBERON:0004921!2.72e-23!129;UBERON:0004185!2.72e-23!129;UBERON:0000077!3.76e-21!130;UBERON:0001041!9.10e-18!98;UBERON:0001004!2.53e-15!72;UBERON:0000062!1.72e-14!511;UBERON:0000466!2.18e-14!126;UBERON:0001048!8.27e-14!168;UBERON:0000464!5.59e-13!104;UBERON:0005911!1.64e-12!82;UBERON:0000065!8.74e-12!53;UBERON:0008947!2.67e-11!38;UBERON:0003258!2.67e-11!38;UBERON:0005177!3.74e-11!107;UBERON:0000481!3.93e-10!347;UBERON:0000922!1.70e-09!612;UBERON:0000072!3.09e-09!46;UBERON:0000468!3.27e-09!659;UBERON:0005153!3.86e-09!37;UBERON:0005409!4.05e-09!35;UBERON:0002050!1.87e-08!605;UBERON:0005423!1.87e-08!605;UBERON:0003104!2.42e-08!238;UBERON:0009142!2.42e-08!238;UBERON:0000923!3.23e-08!604;UBERON:0005291!3.23e-08!604;UBERON:0006598!3.23e-08!604;UBERON:0002532!3.23e-08!604;UBERON:0000064!3.67e-08!219;UBERON:0005157!5.70e-08!51;UBERON:0000063!6.11e-08!97;UBERON:0000480!8.34e-08!626;UBERON:0002553!9.27e-08!70;UBERON:0000467!9.99e-08!625;UBERON:0005156!1.44e-07!59;UBERON:0000990!1.44e-07!59;UBERON:0000160!2.46e-07!27;UBERON:0002048!3.75e-07!22;UBERON:0000117!3.75e-07!22;UBERON:0000171!3.75e-07!22;UBERON:0000170!3.75e-07!22;UBERON:0005597!3.75e-07!22;UBERON:0000118!3.75e-07!22;UBERON:0009569!5.70e-07!113;UBERON:0003133!8.19e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.49e-10;44!UBERON:0001004;1.24e-09;65!UBERON:0004921;2.17e-09;33!UBERON:0000072;3.46e-09;37!UBERON:0004807;1.52e-08;22!UBERON:0002048;6.22e-08;22!UBERON:0000117;6.22e-08;22!UBERON:0000171;6.22e-08;22!UBERON:0000170;6.22e-08;22!UBERON:0004802;4.60e-07;19!UBERON:0000115;4.60e-07;19!UBERON:0005911;4.88e-07;36!UBERON:0005178;8.39e-07;34!UBERON:0002224;8.39e-07;34!UBERON:0005181;8.75e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.78e-28,160;UBERON:0000925,1.78e-28,160;UBERON:0006595,1.78e-28,160;UBERON:0001007,1.81e-23,145;UBERON:0001555,1.81e-23,145;UBERON:0007026,1.81e-23,145;UBERON:0004921,8.07e-23,118;UBERON:0001041,6.50e-18,87;UBERON:0001004,1.56e-16,74;UBERON:0005177,1.62e-14,101;UBERON:0005911,3.94e-13,82;UBERON:0008947,4.38e-13,38;UBERON:0003258,4.38e-13,38;UBERON:0000065,8.70e-13,54;UBERON:0001048,1.97e-11,160;UBERON:0000072,6.88e-10,47;UBERON:0005153,1.18e-09,37;UBERON:0001008,2.09e-08,48;UBERON:0006554,3.53e-08,47;UBERON:0005157,4.77e-08,47;UBERON:0009569,5.27e-08,112;UBERON:0002048,5.80e-08,22;UBERON:0000117,5.80e-08,22;UBERON:0000171,5.80e-08,22;UBERON:0000170,5.80e-08,22;UBERON:0005597,5.80e-08,22;UBERON:0000118,5.80e-08,22;UBERON:0005156,5.81e-08,59;UBERON:0000990,5.81e-08,59;UBERON:0005181,9.14e-08,35;UBERON:0005178,1.02e-07,34;UBERON:0002224,1.02e-07,34;UBERON:0003133,1.58e-07,48;UBERON:0004175,3.04e-07,25;UBERON:0004802,4.32e-07,19;UBERON:0000115,4.32e-07,19;UBERON:0002553,5.88e-07,61;UBERON:0003100,9.71e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,4.17747692052565,4.18680700783456,6.55324116390517,11.8695140202804,0,0.331397375727916,0.672325146451775,0,0,0,0.369363174230364,0.816002764977012,0.313454721478088,0.286235987131057,1.09499540058307,1.38096903554283,3.43860325865781,2.70931945184821,2.91229890860613,0,0,0.464448369948228,13.7913183671839,5.72291245678675,6.65557218300218,0,0,1.76160263600908,0,0,0,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,2.8769239232215,3.33008918487831,0.236482229888585,0,0,0,0,0,0,0,0,0,3.62836430205388,4.3882004676759,1.70489900213078,0,0,0,2.00998932205395,3.12889751052121,0.868755378820466,1.21079900526674,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,3.96513985737078,1.12101712596307,2.10707267820062,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,4.15953195521899,3.99112915432615,3.07421749925941,3.33996642519167,6.19301990097322,5.19098219898201,2.59637914923747,3.13433527138681,2.26028532882071,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0.33472061276467,0.805658634218294,4.56163263431108,0.488124115096339,0,0,0.357198913136319,0.673588117878509,0.225222960966644,0,0,0,0,0,7.41359888642308,0,0,0,0,0,1.12135520028461,0,1.97334038733728,0.311211035399766,0.134710672069688,0.163461903113459,0,0,1.17160715916898,0,0,0,0,0,0,0,0.245668634623536,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0.169560592310488,18.9395636100031,10.3643525824517,10.6117700293931,1.82960559194393,2.78312513475119,3.137236457477,3.93912009058408,2.77552935963191,1.09493207722749,0,0.643240938192885,0,0,0,13.9602024047016,12.9810211360138,13.014595613708,12.9043948096901,11.3297310928051,9.25355414533277,14.6966125894579,12.9506166982728,16.5441277486948,0,0,0.4115740113314,0,10.1404027857465,14.7424082501644,8.27105869353966,0,8.85516757510418,4.80389868835872,7.13376855156066,7.86812272803337,8.64549162740025,11.7587325351333,1.62904152655162,0,1.44331342025273,3.36198174427723,5.87043471179108,2.88732895522148,2.77791307545966,3.61482889245737,13.4334747653077,12.8772924314231,0.738651018262192,0.936017060556951,0.891786973732369,12.185398418281,14.4464630251019,10.4913571959366,18.896848290301,11.3347236020445,8.43441894163465,0.492663237895943,1.58487181223807,5.1832028885193,6.05303804351238,9.21569764012574,0,0,0,1.71072446022705,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,1.64648067356154,0,0,2.37585561880029,6.33022691825131,2.61460037580088,6.19832545328754,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0.414415513436035,0.12269149171914,0,0,0,0.178428988797162,0,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,8.48757200049526,9.98612637062982,7.55975733324201,0.248107807818777,0,0,0,0,0.160853921143607,1.48418066444991,0,0,0,0,0,6.88898862672247,11.6293752775905,29.7421594262945,0.114814448164607,0,0.131124414959424,6.31679458070376,13.1696226448549,6.27479815341484,5.84556898613043,13.2995052405023,0,0.340187410553031,3.88648648983851,0,4.6060894382455,4.51520796469368,7.64628819135115,5.81753206250107,2.91037181138832,0.438519753291869,0,5.64190275256056,6.88830755969382,11.3882438132506,7.21287081534056,5.4941678891006,3.79543699634705,6.89118645595407,7.80072295243825,0,0,0,0,0,0,0,0,0,16.6937764514588,15.3752053892085,9.44334072459923,25.0871296521764,1.85938219718914,0.31481234683064,1.3940745403212,0,0,0,0,1.71749864090389,0.372158369359667,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0.876901770507525,0,0,0.202910376962704,0,0,0.573645408816206,0.294747123039363,0.35667105148125,0.354761064070598,0,0,0,0.349934720244983,9.42976704710018,4.02181365321472,9.80018863751903,6.7783536559281,8.17960208075337,1.68471475667626,8.86860307073351,15.3914678138663,0.507447609232169,0,0,0.238231775457789,0,0,0,0,0,0,8.08632712737405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40676990152261,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0,2.46174797895425,0,0,0,46.2237134808303,0.73254089635947,0,0.222886768554957,4.83031449570902,58.2536542759964,33.2600442532555,92.4553713318689,0,0,0.222617410045812,0,0,5.57894367102995,3.86797481743607,12.3447046448595,0,0.246169610922139,0,15.4573563973402,20.0503715636682,0,2.86065876347107,0,0,1.93866549219044,0.185536196323703,0,11.9796770099207,17.1421599992544,4.34999745260876,18.7759189671074,28.2221551824971,9.45550727071745,3.44743373241465,0,0,0.885741385813839,0,0,0.110579259931225,0,2.19385397153973,14.0530617939497,19.7981716875617,3.69361240818226,0,12.6810147413433,5.02642808694724,6.41019494339848,32.8571194523877,8.88496655998065,46.3740255136212,0,0,6.4822555941061,4.51191321234361,6.4700636324854,4.86682602229944,5.31310451627718,3.97341447450947,25.1087696788352,14.2012543098459,8.48118428603645,6.49165919226273,16.9194528283346,24.0604575449083,31.77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| |||
|short_description=p1@CHMP4C | |||
}} |
Revision as of 06:11, 14 September 2013
Short description: | p1@CHMP4C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CHMP4C_5end |
Coexpression cluster: | C2015_small_squamous_amniotic_rectal_malignant_maxillary_oral |
Association with transcript: | 0bp_to_ENST00000297265, NM_152284, uc003ycl.2_5end |
EntrezGene: | CHMP4C |
HGNC: | 30599 |
UniProt: | Q96CF2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.60e-46 | 253 |
endodermal cell | 1.36e-21 | 58 |
endo-epithelial cell | 2.45e-19 | 42 |
epithelial cell of alimentary canal | 2.83e-10 | 20 |
epithelial cell of lung | 4.32e-07 | 19 |
respiratory epithelial cell | 5.26e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.71e-39 | 106 |
cell type cancer | 3.20e-30 | 143 |
cancer | 3.92e-15 | 235 |
disease of cellular proliferation | 2.79e-14 | 239 |
adenocarcinoma | 7.56e-13 | 25 |
squamous cell carcinoma | 3.49e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.