FFCP PHASE1:Mm9::chr5:109058731..109058780,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=231580|HGNC=|MCL_coexpression_id=775|UniProt=Q99KY4,E9QNB4,D6RHK5,Q3UIZ0,Q3UDE5|association_with_transcript=0bp_to_ENSMUST00000046603,ENSMUST00000112579,ENSMUST00000135225,ENSMUST00000145467,NM_153569,uc008yoh.1,uc008yoi.1,uc008yoj.1,uc008yok.1,uc008yol.1_5end|description=CAGE_peak_1_at_Gak_5end|id=chr5:109058731..109058780,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.65e-13!51;UBERON:0000160!3.70e-11!43;UBERON:0005409!3.71e-10!59;UBERON:0000344!2.41e-08!15;UBERON:0004119!1.01e-07!130;UBERON:0000925!1.01e-07!130;UBERON:0006595!1.01e-07!130;UBERON:0001242!1.31e-07!13;UBERON:0000060!1.31e-07!13;UBERON:0001262!1.31e-07!13;UBERON:0004786!1.31e-07!13;UBERON:0004923!1.43e-07!24;UBERON:0001007!3.30e-07!128;UBERON:0001555!3.30e-07!128;UBERON:0007026!3.30e-07!128|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.65e-13,51;UBERON:0000160,1.99e-12,31;UBERON:0005409,1.75e-10,47;UBERON:0000344,2.41e-08,15;UBERON:0001242,1.31e-07,13;UBERON:0001262,1.31e-07,13;UBERON:0004786,1.31e-07,13;UBERON:0004923,1.43e-07,24;UBERON:0004119,3.22e-07,118;UBERON:0000925,3.22e-07,118;UBERON:0006595,3.22e-07,118|phase1_expression=22.9012851359855,123.886269711973,128.764784747239,164.842995162222,173.309922561436,64.8013989579895,65.4115393667472,45.0640398811101,36.6050677594334,40.2590985273829,34.243593645101,35.099749957948,45.1969927018383,51.3157762199515,35.9758542760916,43.5321824888126,32.8794082720229,47.6347869690939,52.9261713718152,51.7755375193597,42.7767749459881,29.6879944090647,24.8139799681989,57.5972722056264,50.6994511158446,103.361753540704,87.4446852202922,69.5972081575422,85.1304919164555,94.2592685302141,62.7497345154512,40.6419631014164,47.9750534315965,47.5445043046316,49.1047753577167,42.0573652756986,44.3047503089341,74.4986302711696,53.9121387721422,68.0580867165938,88.8229546926832,71.0367304356784,68.4569597773927,33.362656763528,34.7722874082935,36.5258036801746,25.8189143634853,28.1252451730776,35.36947542025,41.9968582000452,33.1767819252109,33.0630898039435,48.992520968859,48.5992635147601,53.4389140636518,32.6719483765653,40.6877484713035,40.2224231976405,36.4169629547276,33.8554226734101,33.5930643858275,34.2232977389823,50.6898033783349,44.9949858640699,52.4099172160496,41.2078466668738,32.0572118254693,24.974189845901,35.6692266341163,35.1015439662396,34.4932936616267,39.1341848633211,38.2102575846291,32.3375709927479,39.5841795305316,37.6879702510109,49.5521464497249,54.0117440100344,51.6117951740978,34.9498662485014,37.4184462333855,32.2966289745191,54.4406848052693,46.1465340225978,44.7698865986054,35.3554302568401,36.7318936461686,37.839087502536,40.5135134332535,38.9193534549945,50.1465565453903,41.3003460951065,33.3185953516798,38.8586297979228,53.2816662307089,44.8026887097336,33.4257719913569,26.0758393544428,17.9252343175979,21.9070536196411,29.0137444739962,41.0644727725817,86.6337815002595,106.660005473,33.339620315727,33.6968621081881,26.7927955857835,49.6699876777911,46.8677569401381,44.8295259975771,23.0735484598961,25.5751001782199,29.0575526542634,26.3764620967089,41.5088136189038,34.1813128416717,88.7429934166402,42.3676115775341,43.3459170455438,26.5297633913751,33.126227769059,23.7588874036259,44.7340226923493,59.1417209963325,58.6450779077674,75.3598312865345,26.2395122667965,25.7958174327165,25.7952560958321,47.4836326913288,44.8350590762254,37.4449969296336,44.1513773288382,56.7688315273334,46.3367339367819,50.2947915510049,40.1247093570246,35.5803935944866,50.5445516867349,56.1879755216885,22.6409570755104,25.289231487682,27.7295679900238,28.6339153887859,37.2159650357763,34.5907044769094,36.5436725782942,36.9945820156792,27.377135102471,28.9332302656763,28.5040821145597,24.1115305670332,32.2534809101694,36.9147296513497,31.8962311432312,27.6657630877706,25.9818879305897,21.6172241976361,29.5530039371416,22.1624576612987,25.0942884179773,20.7071370680167,21.0702814670837,19.8731874064878,19.1291219980349,24.4160641987928,23.6080593231665,26.155436690246,20.899100939012,22.6551100429151,25.5366750069446,22.5147980635012,28.7610651031276,26.707077333314,47.946108272621,38.7950388669902,127.211231448762,63.7325865659142,25.8078783147633,31.1197140292988,38.4025034739838,46.3872106633688,52.7035963912343,54.0240778159668,75.9246498471219,64.5619902518123,62.3311317824668,69.8337216864439,65.8978614462626,94.3760379086933,78.6742501543887,95.3886698888419,22.9498160153229,27.5338915389446,38.3206301288473,27.900231914808,23.2742984601151,42.502306853533,41.9258241133826,50.4826706090239,45.5296310739987,50.4694400440164,58.4011675361683,36.8727683632568,30.0735262523201,30.3563851719553,33.87764027188,30.6294992885569,28.2634695477376,30.7834867072367,40.2095362402088,30.476316863877,44.5681440234799,38.3305176098558,38.6926714662055,43.6961458848503,40.902610282996,56.445891999514,42.6779869284857,20.8440552947533,26.7262561364922,2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| ||
|EntrezGene=231580 | |||
|HGNC= | |||
|MCL_coexpression_id=775 | |||
|UniProt=Q99KY4,E9QNB4,D6RHK5,Q3UIZ0,Q3UDE5 | |||
|association_with_transcript=0bp_to_ENSMUST00000046603,ENSMUST00000112579,ENSMUST00000135225,ENSMUST00000145467,NM_153569,uc008yoh.1,uc008yoi.1,uc008yoj.1,uc008yok.1,uc008yol.1_5end | |||
|description=CAGE_peak_1_at_Gak_5end | |||
|id=chr5:109058731..109058780,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.65e-13!51;UBERON:0000160!3.70e-11!43;UBERON:0005409!3.71e-10!59;UBERON:0000344!2.41e-08!15;UBERON:0004119!1.01e-07!130;UBERON:0000925!1.01e-07!130;UBERON:0006595!1.01e-07!130;UBERON:0001242!1.31e-07!13;UBERON:0000060!1.31e-07!13;UBERON:0001262!1.31e-07!13;UBERON:0004786!1.31e-07!13;UBERON:0004923!1.43e-07!24;UBERON:0001007!3.30e-07!128;UBERON:0001555!3.30e-07!128;UBERON:0007026!3.30e-07!128 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.65e-13,51;UBERON:0000160,1.99e-12,31;UBERON:0005409,1.75e-10,47;UBERON:0000344,2.41e-08,15;UBERON:0001242,1.31e-07,13;UBERON:0001262,1.31e-07,13;UBERON:0004786,1.31e-07,13;UBERON:0004923,1.43e-07,24;UBERON:0004119,3.22e-07,118;UBERON:0000925,3.22e-07,118;UBERON:0006595,3.22e-07,118 | |||
|phase1_expression=22.9012851359855,123.886269711973,128.764784747239,164.842995162222,173.309922561436,64.8013989579895,65.4115393667472,45.0640398811101,36.6050677594334,40.2590985273829,34.243593645101,35.099749957948,45.1969927018383,51.3157762199515,35.9758542760916,43.5321824888126,32.8794082720229,47.6347869690939,52.9261713718152,51.7755375193597,42.7767749459881,29.6879944090647,24.8139799681989,57.5972722056264,50.6994511158446,103.361753540704,87.4446852202922,69.5972081575422,85.1304919164555,94.2592685302141,62.7497345154512,40.6419631014164,47.9750534315965,47.5445043046316,49.1047753577167,42.0573652756986,44.3047503089341,74.4986302711696,53.9121387721422,68.0580867165938,88.8229546926832,71.0367304356784,68.4569597773927,33.362656763528,34.7722874082935,36.5258036801746,25.8189143634853,28.1252451730776,35.36947542025,41.9968582000452,33.1767819252109,33.0630898039435,48.992520968859,48.5992635147601,53.4389140636518,32.6719483765653,40.6877484713035,40.2224231976405,36.4169629547276,33.8554226734101,33.5930643858275,34.2232977389823,50.6898033783349,44.9949858640699,52.4099172160496,41.2078466668738,32.0572118254693,24.974189845901,35.6692266341163,35.1015439662396,34.4932936616267,39.1341848633211,38.2102575846291,32.3375709927479,39.5841795305316,37.6879702510109,49.5521464497249,54.0117440100344,51.6117951740978,34.9498662485014,37.4184462333855,32.2966289745191,54.4406848052693,46.1465340225978,44.7698865986054,35.3554302568401,36.7318936461686,37.839087502536,40.5135134332535,38.9193534549945,50.1465565453903,41.3003460951065,33.3185953516798,38.8586297979228,53.2816662307089,44.8026887097336,33.4257719913569,26.0758393544428,17.9252343175979,21.9070536196411,29.0137444739962,41.0644727725817,86.6337815002595,106.660005473,33.339620315727,33.6968621081881,26.7927955857835,49.6699876777911,46.8677569401381,44.8295259975771,23.0735484598961,25.5751001782199,29.0575526542634,26.3764620967089,41.5088136189038,34.1813128416717,88.7429934166402,42.3676115775341,43.3459170455438,26.5297633913751,33.126227769059,23.7588874036259,44.7340226923493,59.1417209963325,58.6450779077674,75.3598312865345,26.2395122667965,25.7958174327165,25.7952560958321,47.4836326913288,44.8350590762254,37.4449969296336,44.1513773288382,56.7688315273334,46.3367339367819,50.2947915510049,40.1247093570246,35.5803935944866,50.5445516867349,56.1879755216885,22.6409570755104,25.289231487682,27.7295679900238,28.6339153887859,37.2159650357763,34.5907044769094,36.5436725782942,36.9945820156792,27.377135102471,28.9332302656763,28.5040821145597,24.1115305670332,32.2534809101694,36.9147296513497,31.8962311432312,27.6657630877706,25.9818879305897,21.6172241976361,29.5530039371416,22.1624576612987,25.0942884179773,20.7071370680167,21.0702814670837,19.8731874064878,19.1291219980349,24.4160641987928,23.6080593231665,26.155436690246,20.899100939012,22.6551100429151,25.5366750069446,22.5147980635012,28.7610651031276,26.707077333314,47.946108272621,38.7950388669902,127.211231448762,63.7325865659142,25.8078783147633,31.1197140292988,38.4025034739838,46.3872106633688,52.7035963912343,54.0240778159668,75.9246498471219,64.5619902518123,62.3311317824668,69.8337216864439,65.8978614462626,94.3760379086933,78.6742501543887,95.3886698888419,22.9498160153229,27.5338915389446,38.3206301288473,27.900231914808,23.2742984601151,42.502306853533,41.9258241133826,50.4826706090239,45.5296310739987,50.4694400440164,58.4011675361683,36.8727683632568,30.0735262523201,30.3563851719553,33.87764027188,30.6294992885569,28.2634695477376,30.7834867072367,40.2095362402088,30.476316863877,44.5681440234799,38.3305176098558,38.6926714662055,43.6961458848503,40.902610282996,56.445891999514,42.6779869284857,20.8440552947533,26.7262561364922,29.1961547533324,28.6322102911973,36.1813516074322,38.0869825417622,64.5892374409314,44.7683809261582,41.6353616539697,38.4285992464544,41.7851452525132,50.4240147048415,54.3880460266484,93.4905960423488,74.5150786831632,57.5364199432272,60.1542106944317,41.5826028068381,52.8624706530836,20.9836730082145,19.6927323219411,27.7647233086306,24.9880796349849,27.5741949097983,25.3306925829705,33.8653984605239,33.4030306330822,25.0982635038434,25.1340037803728,28.4607200121497,51.4114106274891,34.7753208760258,36.1473175444528,37.9526615293832,44.5419332025846,47.7882498023866,26.9486506132029,28.7207379116513,32.2514686382586,36.9127366100966,44.8855315998134,56.5957962038404,40.3522439720031,32.0847640546249,43.2970358372068,69.5762816594992,61.8813259489121,39.4909942674394,23.7680644121329,25.6130193889854,29.7928478693913,33.1626236911052,32.819862438781,31.0997648938009,43.5384877233877,44.8222962401687,72.8702323771541,52.044701940971,49.9605346412685,42.3036797943273,39.0224624285168,39.9897352410507,47.7650018258128,77.5339025435403,46.7271761066484,39.9837861066975,28.4813877789247,34.075793036027,36.7318491159147,42.6485990489599,41.1800711771741,32.6358585588202,34.5680087239435,37.5903928748033,48.6882015187708,25.465047483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| |||
|short_description=p1@Gak | |||
}} | |||
Revision as of 05:54, 14 September 2013
| Short description: | p1@Gak |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Gak_5end |
| Coexpression cluster: | MCL_coexpression_mm9:775 |
| Association with transcript: | 0bp_to_ENSMUST00000046603, ENSMUST00000112579, ENSMUST00000135225, ENSMUST00000145467, NM_153569, uc008yoh.1, uc008yoi.1, uc008yoj.1, uc008yok.1, uc008yol.1_5end |
| EntrezGene: | Gak |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 3.65e-13 | 51 |
| intestine | 1.99e-12 | 31 |
| gastrointestinal system | 1.75e-10 | 47 |
| mucosa | 2.41e-08 | 15 |
| intestinal mucosa | 1.31e-07 | 13 |
| wall of intestine | 1.31e-07 | 13 |
| gastrointestinal system mucosa | 1.31e-07 | 13 |
| organ component layer | 1.43e-07 | 24 |
| endoderm-derived structure | 3.22e-07 | 118 |
| endoderm | 3.22e-07 | 118 |
| presumptive endoderm | 3.22e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
