FFCP PHASE1:Mm9::chr4:151712924..151712954,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=269610|HGNC=|MCL_coexpression_id=13|UniProt=A2A8L1|association_with_transcript=-41bp_to_ENSMUST00000005175_5end|description=CAGE_peak_3_at_Chd5_5end|id=chr4:151712924..151712954,+|ontology_enrichment_celltype=CL:0000117!4.92e-17!23;CL:0000337!4.92e-17!23;CL:0000540!7.90e-16!33;CL:0000047!7.90e-16!33;CL:0000031!7.90e-16!33;CL:0000404!7.90e-16!33;CL:0000393!1.47e-11!39;CL:0000211!1.47e-11!39;CL:0000221!3.02e-10!44;CL:0000133!3.02e-10!44;CL:0002319!3.63e-10!43;CL:0000055!3.00e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.25e-23,23;CL:0000337,5.25e-23,23;CL:0000540,1.20e-16,33;CL:0000047,1.20e-16,33;CL:0000031,1.20e-16,33;CL:0000404,1.20e-16,33;CL:0000393,6.18e-13,39;CL:0000211,6.18e-13,39;CL:0002319,4.63e-11,43;CL:0000221,1.20e-10,44;CL:0000133,1.20e-10,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.20e-31!73;UBERON:0005743!5.20e-31!73;UBERON:0002346!2.27e-30!71;UBERON:0003075!2.27e-30!71;UBERON:0007284!2.27e-30!71;UBERON:0000073!1.76e-29!75;UBERON:0001016!1.76e-29!75;UBERON:0004121!1.03e-27!102;UBERON:0000924!1.03e-27!102;UBERON:0006601!1.03e-27!102;UBERON:0001049!6.59e-27!52;UBERON:0005068!6.59e-27!52;UBERON:0006241!6.59e-27!52;UBERON:0007135!6.59e-27!52;UBERON:0000955!1.83e-25!50;UBERON:0006238!1.83e-25!50;UBERON:0000033!1.64e-24!63;UBERON:0002616!1.67e-24!49;UBERON:0003056!1.45e-22!49;UBERON:0002020!1.00e-21!34;UBERON:0003080!1.99e-21!40;UBERON:0002780!1.53e-20!39;UBERON:0001890!1.53e-20!39;UBERON:0006240!1.53e-20!39;UBERON:0002791!1.23e-17!29;UBERON:0003528!1.23e-17!29;UBERON:0001893!1.23e-17!29;UBERON:0007811!1.90e-12!86;UBERON:0000956!7.10e-12!21;UBERON:0001869!7.10e-12!21;UBERON:0000203!7.10e-12!21;UBERON:0000153!3.23e-11!94;UBERON:0002619!5.37e-10!17;UBERON:0002021!1.98e-09!10;UBERON:0000411!1.98e-09!10;UBERON:0001950!1.98e-09!10;UBERON:0002420!4.41e-07!8;UBERON:0007245!4.41e-07!8;UBERON:0010009!4.41e-07!8;UBERON:0010011!4.41e-07!8;UBERON:0000454!4.41e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.76e-37,54;UBERON:0001017,7.35e-36,73;UBERON:0001049,9.12e-35,52;UBERON:0005068,9.12e-35,52;UBERON:0006241,9.12e-35,52;UBERON:0007135,9.12e-35,52;UBERON:0001016,1.77e-34,75;UBERON:0002346,2.28e-33,64;UBERON:0003075,2.28e-33,64;UBERON:0007284,2.28e-33,64;UBERON:0002020,7.12e-31,34;UBERON:0000955,4.79e-29,47;UBERON:0006238,4.79e-29,47;UBERON:0004121,7.76e-29,95;UBERON:0000924,7.76e-29,95;UBERON:0006601,7.76e-29,95;UBERON:0002616,1.06e-27,46;UBERON:0010371,1.90e-27,73;UBERON:0003080,2.14e-27,40;UBERON:0003056,2.21e-26,49;UBERON:0002780,4.12e-26,39;UBERON:0001890,4.12e-26,39;UBERON:0006240,4.12e-26,39;UBERON:0003528,9.32e-25,29;UBERON:0002791,9.32e-25,29;UBERON:0001893,9.32e-25,29;UBERON:0010314,8.03e-19,92;UBERON:0000956,3.71e-16,21;UBERON:0001869,3.71e-16,21;UBERON:0000203,3.71e-16,21;UBERON:0002619,6.77e-15,17;UBERON:0002021,2.26e-13,10;UBERON:0000411,2.26e-13,10;UBERON:0001950,2.26e-13,10;UBERON:0002420,7.39e-10,8;UBERON:0007245,7.39e-10,8;UBERON:0010009,7.39e-10,8;UBERON:0010011,7.39e-10,8;UBERON:0000454,7.39e-10,8;UBERON:0000025,5.94e-09,114;UBERON:0002240,3.49e-08,6;UBERON:0005174,3.49e-08,6;UBERON:0001137,3.49e-08,6;UBERON:0003076,1.25e-07,12;UBERON:0003057,1.25e-07,12;UBERON:0004111,1.26e-07,122;UBERON:0001948,2.64e-07,5;UBERON:0002315,2.64e-07,5;UBERON:0000369,5.49e-07,5;UBERON:0002435,5.49e-07,5;UBERON:0000204,5.49e-07,5;UBERON:0010082,5.49e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.09265843438391,10.5798195854407,10.775133859605,0,0,0,0,0,0,0.384218305321555,0.933206510776299,1.21505344498522,1.05162480675691,6.56997264128748,7.73039893330647,1.5923803897944,1.53352753629178,5.51531271966013,7.70811166995721,8.2996769755372,7.68032666281217,6.98997324970027,10.4295913706747,4.68822033501084,5.02529398202486,3.93933827022176,7.33431589328689,7.07108605136802,8.82704420954438,9.50637173709033,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,0,0.890652834388949,0.173485326766136,0.913396434936424,0.230615497256059,0.753613202763113,0.705532242814229,0.376999773989026,0,0.289198713839823,0,0,0,0,0,2.04946557908083,0.83778682725382,0,0,0,0,9.28701964309901,7.77751024791665,6.03140890141749,8.34356736922927,5.11430914660661,9.55825004973976,6.81413304884582,0,0,0,1.47309299120532,0,0,0.360124259610698,0.30140963567143,0.612328492361951,1.66547836370305,1.21812241927647,4.9153640440413,0,0.189106080167819,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.25724871410318,3.39585220851639,0,0.264450566663544,0.213288250535234,0.696710015581316,0.257734922644187,0,0.22237804384487,0,0,0.164698954724011,0,0.397912944082302,0,0,0,0.199141273254367,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,5.61927064957272,5.39173758324135,0,0,0,2.34263246577983,0.215423397732799,0.477937595905104,0,0.283076530788832,0.809621403349789,0.584511715822624,1.18586333383957,10.9249247583414,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,1.36175842301515,0,0.129358683782755,0.214337035031592,1.41872186913819,1.60531935841864,0.493647061806363,1.8267896946876,0,0,0.220528398054962,0,0,0,0,0,0,4.07935664423121,0,0,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0,0.209088296014469,0.436725127492355,0.269728692769641,0.41326727862668,0,0,0,3.94585057078933,0.149516546043979,0,0,0,0,0.117357238645754,0.13020438484395,0.314578033277133,0,1.72818003754719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.90652579663893,9.66682996665071,11.4579102687879,7.73339320546594,4.7955776383945,9.06472676867641,7.42524750254986,8.10578165803597,7.70342095273148,8.80192529978094,0,0,0,0.243106717068294,0.838452650511929,1.10306105070008,2.44471400581777,0.618105171716683,0.64183841918363,1.26348605881899,1.01391719956096,1.88626341386076,1.12369808963859,1.53660365771686,1.03383844120104,1.90517476513229,1.27472758539341,0.964546102318525,0,0.735994600671987,0.342869252385415,1.24233064311536,2.86123427936785,2.0348498328526,1.03520318456864,1.69229215783353,1.09756783723664,1.05227884575137,1.49384525230448,0,0.949080144993393,0.985044823755635,1.63692417267876,0.77468420592983,0.964533054905707,3.49734809113124,0.467863216890817,0.859484216193193,0.191288332068843,0.220591419119515,0|short_description=p3@Chd5}} | ||
|EntrezGene=269610 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=A2A8L1 | |||
|association_with_transcript=-41bp_to_ENSMUST00000005175_5end | |||
|description=CAGE_peak_3_at_Chd5_5end | |||
|id=chr4:151712924..151712954,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.92e-17!23;CL:0000337!4.92e-17!23;CL:0000540!7.90e-16!33;CL:0000047!7.90e-16!33;CL:0000031!7.90e-16!33;CL:0000404!7.90e-16!33;CL:0000393!1.47e-11!39;CL:0000211!1.47e-11!39;CL:0000221!3.02e-10!44;CL:0000133!3.02e-10!44;CL:0002319!3.63e-10!43;CL:0000055!3.00e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.25e-23,23;CL:0000337,5.25e-23,23;CL:0000540,1.20e-16,33;CL:0000047,1.20e-16,33;CL:0000031,1.20e-16,33;CL:0000404,1.20e-16,33;CL:0000393,6.18e-13,39;CL:0000211,6.18e-13,39;CL:0002319,4.63e-11,43;CL:0000221,1.20e-10,44;CL:0000133,1.20e-10,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.20e-31!73;UBERON:0005743!5.20e-31!73;UBERON:0002346!2.27e-30!71;UBERON:0003075!2.27e-30!71;UBERON:0007284!2.27e-30!71;UBERON:0000073!1.76e-29!75;UBERON:0001016!1.76e-29!75;UBERON:0004121!1.03e-27!102;UBERON:0000924!1.03e-27!102;UBERON:0006601!1.03e-27!102;UBERON:0001049!6.59e-27!52;UBERON:0005068!6.59e-27!52;UBERON:0006241!6.59e-27!52;UBERON:0007135!6.59e-27!52;UBERON:0000955!1.83e-25!50;UBERON:0006238!1.83e-25!50;UBERON:0000033!1.64e-24!63;UBERON:0002616!1.67e-24!49;UBERON:0003056!1.45e-22!49;UBERON:0002020!1.00e-21!34;UBERON:0003080!1.99e-21!40;UBERON:0002780!1.53e-20!39;UBERON:0001890!1.53e-20!39;UBERON:0006240!1.53e-20!39;UBERON:0002791!1.23e-17!29;UBERON:0003528!1.23e-17!29;UBERON:0001893!1.23e-17!29;UBERON:0007811!1.90e-12!86;UBERON:0000956!7.10e-12!21;UBERON:0001869!7.10e-12!21;UBERON:0000203!7.10e-12!21;UBERON:0000153!3.23e-11!94;UBERON:0002619!5.37e-10!17;UBERON:0002021!1.98e-09!10;UBERON:0000411!1.98e-09!10;UBERON:0001950!1.98e-09!10;UBERON:0002420!4.41e-07!8;UBERON:0007245!4.41e-07!8;UBERON:0010009!4.41e-07!8;UBERON:0010011!4.41e-07!8;UBERON:0000454!4.41e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.76e-37,54;UBERON:0001017,7.35e-36,73;UBERON:0001049,9.12e-35,52;UBERON:0005068,9.12e-35,52;UBERON:0006241,9.12e-35,52;UBERON:0007135,9.12e-35,52;UBERON:0001016,1.77e-34,75;UBERON:0002346,2.28e-33,64;UBERON:0003075,2.28e-33,64;UBERON:0007284,2.28e-33,64;UBERON:0002020,7.12e-31,34;UBERON:0000955,4.79e-29,47;UBERON:0006238,4.79e-29,47;UBERON:0004121,7.76e-29,95;UBERON:0000924,7.76e-29,95;UBERON:0006601,7.76e-29,95;UBERON:0002616,1.06e-27,46;UBERON:0010371,1.90e-27,73;UBERON:0003080,2.14e-27,40;UBERON:0003056,2.21e-26,49;UBERON:0002780,4.12e-26,39;UBERON:0001890,4.12e-26,39;UBERON:0006240,4.12e-26,39;UBERON:0003528,9.32e-25,29;UBERON:0002791,9.32e-25,29;UBERON:0001893,9.32e-25,29;UBERON:0010314,8.03e-19,92;UBERON:0000956,3.71e-16,21;UBERON:0001869,3.71e-16,21;UBERON:0000203,3.71e-16,21;UBERON:0002619,6.77e-15,17;UBERON:0002021,2.26e-13,10;UBERON:0000411,2.26e-13,10;UBERON:0001950,2.26e-13,10;UBERON:0002420,7.39e-10,8;UBERON:0007245,7.39e-10,8;UBERON:0010009,7.39e-10,8;UBERON:0010011,7.39e-10,8;UBERON:0000454,7.39e-10,8;UBERON:0000025,5.94e-09,114;UBERON:0002240,3.49e-08,6;UBERON:0005174,3.49e-08,6;UBERON:0001137,3.49e-08,6;UBERON:0003076,1.25e-07,12;UBERON:0003057,1.25e-07,12;UBERON:0004111,1.26e-07,122;UBERON:0001948,2.64e-07,5;UBERON:0002315,2.64e-07,5;UBERON:0000369,5.49e-07,5;UBERON:0002435,5.49e-07,5;UBERON:0000204,5.49e-07,5;UBERON:0010082,5.49e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.09265843438391,10.5798195854407,10.775133859605,0,0,0,0,0,0,0.384218305321555,0.933206510776299,1.21505344498522,1.05162480675691,6.56997264128748,7.73039893330647,1.5923803897944,1.53352753629178,5.51531271966013,7.70811166995721,8.2996769755372,7.68032666281217,6.98997324970027,10.4295913706747,4.68822033501084,5.02529398202486,3.93933827022176,7.33431589328689,7.07108605136802,8.82704420954438,9.50637173709033,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,0,0.890652834388949,0.173485326766136,0.913396434936424,0.230615497256059,0.753613202763113,0.705532242814229,0.376999773989026,0,0.289198713839823,0,0,0,0,0,2.04946557908083,0.83778682725382,0,0,0,0,9.28701964309901,7.77751024791665,6.03140890141749,8.34356736922927,5.11430914660661,9.55825004973976,6.81413304884582,0,0,0,1.47309299120532,0,0,0.360124259610698,0.30140963567143,0.612328492361951,1.66547836370305,1.21812241927647,4.9153640440413,0,0.189106080167819,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.25724871410318,3.39585220851639,0,0.264450566663544,0.213288250535234,0.696710015581316,0.257734922644187,0,0.22237804384487,0,0,0.164698954724011,0,0.397912944082302,0,0,0,0.199141273254367,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,5.61927064957272,5.39173758324135,0,0,0,2.34263246577983,0.215423397732799,0.477937595905104,0,0.283076530788832,0.809621403349789,0.584511715822624,1.18586333383957,10.9249247583414,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,1.36175842301515,0,0.129358683782755,0.214337035031592,1.41872186913819,1.60531935841864,0.493647061806363,1.8267896946876,0,0,0.220528398054962,0,0,0,0,0,0,4.07935664423121,0,0,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0,0.209088296014469,0.436725127492355,0.269728692769641,0.41326727862668,0,0,0,3.94585057078933,0.149516546043979,0,0,0,0,0.117357238645754,0.13020438484395,0.314578033277133,0,1.72818003754719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.90652579663893,9.66682996665071,11.4579102687879,7.73339320546594,4.7955776383945,9.06472676867641,7.42524750254986,8.10578165803597,7.70342095273148,8.80192529978094,0,0,0,0.243106717068294,0.838452650511929,1.10306105070008,2.44471400581777,0.618105171716683,0.64183841918363,1.26348605881899,1.01391719956096,1.88626341386076,1.12369808963859,1.53660365771686,1.03383844120104,1.90517476513229,1.27472758539341,0.964546102318525,0,0.735994600671987,0.342869252385415,1.24233064311536,2.86123427936785,2.0348498328526,1.03520318456864,1.69229215783353,1.09756783723664,1.05227884575137,1.49384525230448,0,0.949080144993393,0.985044823755635,1.63692417267876,0.77468420592983,0.964533054905707,3.49734809113124,0.467863216890817,0.859484216193193,0.191288332068843,0.220591419119515,0 | |||
|short_description=p3@Chd5 | |||
}} |
Revision as of 04:36, 14 September 2013
Short description: | p3@Chd5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Chd5_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -41bp_to_ENSMUST00000005175_5end |
EntrezGene: | Chd5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.25e-23 | 23 |
neuroblast (sensu Vertebrata) | 5.25e-23 | 23 |
neuron | 1.20e-16 | 33 |
neuronal stem cell | 1.20e-16 | 33 |
neuroblast | 1.20e-16 | 33 |
electrically signaling cell | 1.20e-16 | 33 |
electrically responsive cell | 6.18e-13 | 39 |
electrically active cell | 6.18e-13 | 39 |
neural cell | 4.63e-11 | 43 |
ectodermal cell | 1.20e-10 | 44 |
neurectodermal cell | 1.20e-10 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.