FFCP PHASE1:Mm9::chr3:88262969..88262996,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20351|HGNC=|MCL_coexpression_id=13|UniProt=|association_with_transcript=-17bp_to_ENSMUST00000135262_5end|description=CAGE_peak_9_at_Sema4a_5end|id=chr3:88262969..88262996,-|ontology_enrichment_celltype=CL:0000117!1.94e-18!23;CL:0000337!1.94e-18!23;CL:0000540!3.03e-10!33;CL:0000047!3.03e-10!33;CL:0000031!3.03e-10!33;CL:0000404!3.03e-10!33;CL:0000393!1.74e-07!39;CL:0000211!1.74e-07!39;CL:0002319!9.18e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.61e-32,23;CL:0000337,2.61e-32,23;CL:0000540,8.46e-21,33;CL:0000047,8.46e-21,33;CL:0000031,8.46e-21,33;CL:0000404,8.46e-21,33;CL:0000393,9.64e-17,39;CL:0000211,9.64e-17,39;CL:0002319,1.13e-14,43;CL:0000221,3.23e-14,44;CL:0000133,3.23e-14,44;CL:0002609,3.57e-07,6;CL:0002613,4.68e-07,3;CL:0002321,5.17e-07,70;CL:0002614,9.18e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.20e-26!34;UBERON:0001049!1.43e-25!52;UBERON:0005068!1.43e-25!52;UBERON:0006241!1.43e-25!52;UBERON:0007135!1.43e-25!52;UBERON:0000955!3.41e-22!50;UBERON:0006238!3.41e-22!50;UBERON:0002791!3.75e-22!29;UBERON:0003528!3.75e-22!29;UBERON:0001893!3.75e-22!29;UBERON:0002346!7.45e-22!71;UBERON:0003075!7.45e-22!71;UBERON:0007284!7.45e-22!71;UBERON:0001017!8.47e-22!73;UBERON:0005743!8.47e-22!73;UBERON:0000033!1.57e-21!63;UBERON:0002616!2.47e-21!49;UBERON:0003056!3.50e-21!49;UBERON:0000073!1.02e-20!75;UBERON:0001016!1.02e-20!75;UBERON:0003080!1.97e-19!40;UBERON:0002780!1.77e-18!39;UBERON:0001890!1.77e-18!39;UBERON:0006240!1.77e-18!39;UBERON:0004121!9.37e-17!102;UBERON:0000924!9.37e-17!102;UBERON:0006601!9.37e-17!102;UBERON:0000956!8.42e-15!21;UBERON:0001869!8.42e-15!21;UBERON:0000203!8.42e-15!21;UBERON:0002619!5.56e-12!17;UBERON:0000153!1.52e-11!94;UBERON:0007811!1.99e-11!86;UBERON:0002021!1.46e-10!10;UBERON:0000411!1.46e-10!10;UBERON:0001950!1.46e-10!10;UBERON:0002420!1.35e-08!8;UBERON:0007245!1.35e-08!8;UBERON:0010009!1.35e-08!8;UBERON:0010011!1.35e-08!8;UBERON:0000454!1.35e-08!8|ontology_enrichment_uberon_v019_2=UBERON:0002020,6.27e-49,34;UBERON:0000073,2.82e-44,54;UBERON:0001049,1.47e-43,52;UBERON:0005068,1.47e-43,52;UBERON:0006241,1.47e-43,52;UBERON:0007135,1.47e-43,52;UBERON:0001017,6.38e-41,73;UBERON:0003528,3.64e-40,29;UBERON:0002791,3.64e-40,29;UBERON:0001893,3.64e-40,29;UBERON:0001016,1.44e-39,75;UBERON:0002346,1.26e-35,64;UBERON:0003075,1.26e-35,64;UBERON:0007284,1.26e-35,64;UBERON:0000955,1.84e-35,47;UBERON:0006238,1.84e-35,47;UBERON:0003080,9.07e-35,40;UBERON:0002616,7.46e-34,46;UBERON:0002780,6.28e-33,39;UBERON:0001890,6.28e-33,39;UBERON:0006240,6.28e-33,39;UBERON:0004121,1.02e-30,95;UBERON:0000924,1.02e-30,95;UBERON:0006601,1.02e-30,95;UBERON:0010371,4.36e-30,73;UBERON:0003056,6.49e-29,49;UBERON:0000956,6.79e-26,21;UBERON:0001869,6.79e-26,21;UBERON:0000203,6.79e-26,21;UBERON:0002619,6.45e-23,17;UBERON:0010314,5.96e-22,92;UBERON:0002021,4.57e-19,10;UBERON:0000411,4.57e-19,10;UBERON:0001950,4.57e-19,10;UBERON:0002420,3.05e-15,8;UBERON:0007245,3.05e-15,8;UBERON:0010009,3.05e-15,8;UBERON:0010011,3.05e-15,8;UBERON:0000454,3.05e-15,8;UBERON:0000025,6.83e-15,114;UBERON:0004111,2.54e-13,122;UBERON:0002240,5.73e-11,6;UBERON:0005174,5.73e-11,6;UBERON:0001137,5.73e-11,6;UBERON:0000369,4.63e-10,5;UBERON:0002435,4.63e-10,5;UBERON:0000204,4.63e-10,5;UBERON:0010082,4.63e-10,5;UBERON:0001948,1.54e-09,5;UBERON:0002315,1.54e-09,5;UBERON:0011216,3.68e-09,194;UBERON:0003076,8.99e-09,12;UBERON:0003057,8.99e-09,12;UBERON:0002950,1.16e-08,4;UBERON:0001891,1.16e-08,4;UBERON:0009616,1.16e-08,4;UBERON:0010286,1.16e-08,4;UBERON:0000483,2.74e-07,174;UBERON:0000119,4.19e-07,176;UBERON:0002038,9.18e-07,3;UBERON:0009663,9.18e-07,3;UBERON:0009661,9.18e-07,3;UBERON:0000125,9.18e-07,3;UBERON:0002308,9.18e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06949382578793,4.7609188134483,2.53532561402472,0,0,0,0,0,0,0.384218305321555,0.622137673850866,2.56511282830212,1.05162480675691,5.42736870367227,2.87129103237098,2.44981598429908,2.49198224647415,6.43453150627015,0,3.95830748064082,3.84016333140609,5.93488294785872,4.94033275453012,5.73004707612436,4.4669279840221,6.19038871034848,4.12555268997387,2.94628585473668,4.41352210477219,4.10078780815661,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0.292780797011547,0.83778682725382,0,0,0,0,6.14141621559773,1.37250180845588,5.15182843662744,5.38855392596057,6.90431734791892,3.1168206683934,2.75810147215188,0,0,0,0.420883711772948,0,0,0.180062129805349,0.452114453507145,1.2246569847239,0.512454881139399,0.374806898238915,0.517406741478031,0.215567992932842,0.756424320671277,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,2.52347938276953,2.57261530948211,0,0,0.213288250535234,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0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| ||
|EntrezGene=20351 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt= | |||
|association_with_transcript=-17bp_to_ENSMUST00000135262_5end | |||
|description=CAGE_peak_9_at_Sema4a_5end | |||
|id=chr3:88262969..88262996,- | |||
|ontology_enrichment_celltype=CL:0000117!1.94e-18!23;CL:0000337!1.94e-18!23;CL:0000540!3.03e-10!33;CL:0000047!3.03e-10!33;CL:0000031!3.03e-10!33;CL:0000404!3.03e-10!33;CL:0000393!1.74e-07!39;CL:0000211!1.74e-07!39;CL:0002319!9.18e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.61e-32,23;CL:0000337,2.61e-32,23;CL:0000540,8.46e-21,33;CL:0000047,8.46e-21,33;CL:0000031,8.46e-21,33;CL:0000404,8.46e-21,33;CL:0000393,9.64e-17,39;CL:0000211,9.64e-17,39;CL:0002319,1.13e-14,43;CL:0000221,3.23e-14,44;CL:0000133,3.23e-14,44;CL:0002609,3.57e-07,6;CL:0002613,4.68e-07,3;CL:0002321,5.17e-07,70;CL:0002614,9.18e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.20e-26!34;UBERON:0001049!1.43e-25!52;UBERON:0005068!1.43e-25!52;UBERON:0006241!1.43e-25!52;UBERON:0007135!1.43e-25!52;UBERON:0000955!3.41e-22!50;UBERON:0006238!3.41e-22!50;UBERON:0002791!3.75e-22!29;UBERON:0003528!3.75e-22!29;UBERON:0001893!3.75e-22!29;UBERON:0002346!7.45e-22!71;UBERON:0003075!7.45e-22!71;UBERON:0007284!7.45e-22!71;UBERON:0001017!8.47e-22!73;UBERON:0005743!8.47e-22!73;UBERON:0000033!1.57e-21!63;UBERON:0002616!2.47e-21!49;UBERON:0003056!3.50e-21!49;UBERON:0000073!1.02e-20!75;UBERON:0001016!1.02e-20!75;UBERON:0003080!1.97e-19!40;UBERON:0002780!1.77e-18!39;UBERON:0001890!1.77e-18!39;UBERON:0006240!1.77e-18!39;UBERON:0004121!9.37e-17!102;UBERON:0000924!9.37e-17!102;UBERON:0006601!9.37e-17!102;UBERON:0000956!8.42e-15!21;UBERON:0001869!8.42e-15!21;UBERON:0000203!8.42e-15!21;UBERON:0002619!5.56e-12!17;UBERON:0000153!1.52e-11!94;UBERON:0007811!1.99e-11!86;UBERON:0002021!1.46e-10!10;UBERON:0000411!1.46e-10!10;UBERON:0001950!1.46e-10!10;UBERON:0002420!1.35e-08!8;UBERON:0007245!1.35e-08!8;UBERON:0010009!1.35e-08!8;UBERON:0010011!1.35e-08!8;UBERON:0000454!1.35e-08!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,6.27e-49,34;UBERON:0000073,2.82e-44,54;UBERON:0001049,1.47e-43,52;UBERON:0005068,1.47e-43,52;UBERON:0006241,1.47e-43,52;UBERON:0007135,1.47e-43,52;UBERON:0001017,6.38e-41,73;UBERON:0003528,3.64e-40,29;UBERON:0002791,3.64e-40,29;UBERON:0001893,3.64e-40,29;UBERON:0001016,1.44e-39,75;UBERON:0002346,1.26e-35,64;UBERON:0003075,1.26e-35,64;UBERON:0007284,1.26e-35,64;UBERON:0000955,1.84e-35,47;UBERON:0006238,1.84e-35,47;UBERON:0003080,9.07e-35,40;UBERON:0002616,7.46e-34,46;UBERON:0002780,6.28e-33,39;UBERON:0001890,6.28e-33,39;UBERON:0006240,6.28e-33,39;UBERON:0004121,1.02e-30,95;UBERON:0000924,1.02e-30,95;UBERON:0006601,1.02e-30,95;UBERON:0010371,4.36e-30,73;UBERON:0003056,6.49e-29,49;UBERON:0000956,6.79e-26,21;UBERON:0001869,6.79e-26,21;UBERON:0000203,6.79e-26,21;UBERON:0002619,6.45e-23,17;UBERON:0010314,5.96e-22,92;UBERON:0002021,4.57e-19,10;UBERON:0000411,4.57e-19,10;UBERON:0001950,4.57e-19,10;UBERON:0002420,3.05e-15,8;UBERON:0007245,3.05e-15,8;UBERON:0010009,3.05e-15,8;UBERON:0010011,3.05e-15,8;UBERON:0000454,3.05e-15,8;UBERON:0000025,6.83e-15,114;UBERON:0004111,2.54e-13,122;UBERON:0002240,5.73e-11,6;UBERON:0005174,5.73e-11,6;UBERON:0001137,5.73e-11,6;UBERON:0000369,4.63e-10,5;UBERON:0002435,4.63e-10,5;UBERON:0000204,4.63e-10,5;UBERON:0010082,4.63e-10,5;UBERON:0001948,1.54e-09,5;UBERON:0002315,1.54e-09,5;UBERON:0011216,3.68e-09,194;UBERON:0003076,8.99e-09,12;UBERON:0003057,8.99e-09,12;UBERON:0002950,1.16e-08,4;UBERON:0001891,1.16e-08,4;UBERON:0009616,1.16e-08,4;UBERON:0010286,1.16e-08,4;UBERON:0000483,2.74e-07,174;UBERON:0000119,4.19e-07,176;UBERON:0002038,9.18e-07,3;UBERON:0009663,9.18e-07,3;UBERON:0009661,9.18e-07,3;UBERON:0000125,9.18e-07,3;UBERON:0002308,9.18e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06949382578793,4.7609188134483,2.53532561402472,0,0,0,0,0,0,0.384218305321555,0.622137673850866,2.56511282830212,1.05162480675691,5.42736870367227,2.87129103237098,2.44981598429908,2.49198224647415,6.43453150627015,0,3.95830748064082,3.84016333140609,5.93488294785872,4.94033275453012,5.73004707612436,4.4669279840221,6.19038871034848,4.12555268997387,2.94628585473668,4.41352210477219,4.10078780815661,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0.292780797011547,0.83778682725382,0,0,0,0,6.14141621559773,1.37250180845588,5.15182843662744,5.38855392596057,6.90431734791892,3.1168206683934,2.75810147215188,0,0,0,0.420883711772948,0,0,0.180062129805349,0.452114453507145,1.2246569847239,0.512454881139399,0.374806898238915,0.517406741478031,0.215567992932842,0.756424320671277,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,2.52347938276953,2.57261530948211,0,0,0.213288250535234,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0.163863314715738,0,0,0,0,0,0,2.0871576698413,4.33683240391152,0,0,0,0,0,0,0,0,0,0,0,4.17717711348349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0,0.178368817602071,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,2.78137953015765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12738587736838,0,0,0.194451188344048,0.129159823477731,0,0.234714477291508,0,0,0,0.864090018773596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,4.51801474093653,8.74617949363636,4.01026859407578,4.46818274093588,4.7955776383945,1.5107877947794,8.77529250301348,8.55610286126019,3.62513927187364,7.24864436452548,0.31136204275253,0.798049746802062,0.512200817262403,0,0.838452650511929,0,0.222246727801615,1.23621034343337,0.320919209591815,0.505394423527595,0.50695859978048,0.377252682772152,0.37456602987953,0.576226371643824,0.402048282689293,0.952587382566147,0.927074607558844,0.578727661391115,0,0.588795680537589,1.02860775715625,0.354951612318675,0.715308569841963,0.581385666529314,0.376437521661322,0.507687647350059,0.182927972872773,0.263069711437843,0.407412341537585,0.561142271657738,0.355905054372522,0.591026894253381,0,0.77468420592983,0.964533054905707,1.24905288968973,0.467863216890817,0.644613162144895,0.57386499620653,0,0.231867835620421 | |||
|short_description=p9@Sema4a | |||
}} |
Revision as of 02:46, 14 September 2013
Short description: | p9@Sema4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Sema4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -17bp_to_ENSMUST00000135262_5end |
EntrezGene: | Sema4a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.61e-32 | 23 |
neuroblast (sensu Vertebrata) | 2.61e-32 | 23 |
neuron | 8.46e-21 | 33 |
neuronal stem cell | 8.46e-21 | 33 |
neuroblast | 8.46e-21 | 33 |
electrically signaling cell | 8.46e-21 | 33 |
electrically responsive cell | 9.64e-17 | 39 |
electrically active cell | 9.64e-17 | 39 |
neural cell | 1.13e-14 | 43 |
ectodermal cell | 3.23e-14 | 44 |
neurectodermal cell | 3.23e-14 | 44 |
neuron of cerebral cortex | 3.57e-07 | 6 |
striatum neuron | 4.68e-07 | 3 |
embryonic cell | 5.17e-07 | 70 |
neuron of the substantia nigra | 9.18e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.