FFCP PHASE1:Mm9::chr2:70400064..70400094,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14415|HGNC=|MCL_coexpression_id=93|UniProt=P48318,D3Z1L8|association_with_transcript=-4bp_to_ENSMUST00000094934,ENSMUST00000130604_5end|description=CAGE_peak_2_at_Gad1_5end|id=chr2:70400064..70400094,+|ontology_enrichment_celltype=CL:0000117!1.19e-19!23;CL:0000337!1.19e-19!23;CL:0000221!3.96e-13!44;CL:0000133!3.96e-13!44;CL:0002319!7.11e-13!43;CL:0000540!7.64e-12!33;CL:0000047!7.64e-12!33;CL:0000031!7.64e-12!33;CL:0000404!7.64e-12!33;CL:0000055!1.27e-09!50;CL:0000393!1.00e-08!39;CL:0000211!1.00e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.10e-29,23;CL:0000337,2.10e-29,23;CL:0000540,2.18e-18,33;CL:0000047,2.18e-18,33;CL:0000031,2.18e-18,33;CL:0000404,2.18e-18,33;CL:0000393,1.58e-14,39;CL:0000211,1.58e-14,39;CL:0002319,9.26e-14,43;CL:0000221,2.71e-13,44;CL:0000133,2.71e-13,44;CL:0002609,9.63e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.99e-30!75;UBERON:0001016!5.99e-30!75;UBERON:0001049!1.57e-29!52;UBERON:0005068!1.57e-29!52;UBERON:0006241!1.57e-29!52;UBERON:0007135!1.57e-29!52;UBERON:0001017!3.64e-29!73;UBERON:0005743!3.64e-29!73;UBERON:0000955!6.99e-29!50;UBERON:0006238!6.99e-29!50;UBERON:0000033!9.46e-29!63;UBERON:0002020!1.70e-28!34;UBERON:0002616!8.89e-28!49;UBERON:0002791!1.93e-24!29;UBERON:0003528!1.93e-24!29;UBERON:0001893!1.93e-24!29;UBERON:0002346!2.28e-24!71;UBERON:0003075!2.28e-24!71;UBERON:0007284!2.28e-24!71;UBERON:0004121!1.40e-23!102;UBERON:0000924!1.40e-23!102;UBERON:0006601!1.40e-23!102;UBERON:0003056!1.33e-22!49;UBERON:0003080!8.75e-22!40;UBERON:0002780!9.15e-21!39;UBERON:0001890!9.15e-21!39;UBERON:0006240!9.15e-21!39;UBERON:0000956!3.24e-17!21;UBERON:0001869!3.24e-17!21;UBERON:0000203!3.24e-17!21;UBERON:0007811!1.05e-16!86;UBERON:0002619!1.89e-14!17;UBERON:0000153!9.15e-14!94;UBERON:0002021!7.75e-10!10;UBERON:0000411!7.75e-10!10;UBERON:0001950!7.75e-10!10;UBERON:0002420!2.52e-08!8;UBERON:0007245!2.52e-08!8;UBERON:0010009!2.52e-08!8;UBERON:0010011!2.52e-08!8;UBERON:0000454!2.52e-08!8;UBERON:0003076!4.02e-08!12;UBERON:0003057!4.02e-08!12;UBERON:0002298!9.63e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.48e-42,54;UBERON:0001017,7.17e-39,73;UBERON:0002020,8.69e-39,34;UBERON:0001049,1.56e-38,52;UBERON:0005068,1.56e-38,52;UBERON:0006241,1.56e-38,52;UBERON:0007135,1.56e-38,52;UBERON:0001016,1.77e-37,75;UBERON:0002346,5.81e-34,64;UBERON:0003075,5.81e-34,64;UBERON:0007284,5.81e-34,64;UBERON:0000955,7.66e-33,47;UBERON:0006238,7.66e-33,47;UBERON:0003528,1.41e-32,29;UBERON:0002791,1.41e-32,29;UBERON:0001893,1.41e-32,29;UBERON:0002616,2.84e-31,46;UBERON:0004121,9.01e-31,95;UBERON:0000924,9.01e-31,95;UBERON:0006601,9.01e-31,95;UBERON:0010371,2.89e-28,73;UBERON:0003080,3.95e-28,40;UBERON:0002780,1.25e-26,39;UBERON:0001890,1.25e-26,39;UBERON:0006240,1.25e-26,39;UBERON:0003056,6.25e-26,49;UBERON:0000956,1.22e-21,21;UBERON:0001869,1.22e-21,21;UBERON:0000203,1.22e-21,21;UBERON:0010314,6.28e-20,92;UBERON:0002619,2.10e-17,17;UBERON:0002021,2.77e-14,10;UBERON:0000411,2.77e-14,10;UBERON:0001950,2.77e-14,10;UBERON:0002420,5.82e-12,8;UBERON:0007245,5.82e-12,8;UBERON:0010009,5.82e-12,8;UBERON:0010011,5.82e-12,8;UBERON:0000454,5.82e-12,8;UBERON:0000025,2.15e-11,114;UBERON:0003076,2.26e-10,12;UBERON:0003057,2.26e-10,12;UBERON:0004111,6.02e-10,122;UBERON:0002240,3.82e-08,6;UBERON:0005174,3.82e-08,6;UBERON:0001137,3.82e-08,6;UBERON:0000369,9.49e-08,5;UBERON:0002435,9.49e-08,5;UBERON:0000204,9.49e-08,5;UBERON:0010082,9.49e-08,5;UBERON:0002950,2.34e-07,4;UBERON:0001891,2.34e-07,4;UBERON:0009616,2.34e-07,4;UBERON:0010286,2.34e-07,4;UBERON:0001948,3.82e-07,5;UBERON:0002315,3.82e-07,5|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315462165358238,0.548457734422955,0,2.63634199468316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.878744730937887,0.58328969722285,0,0,0.503347818173209,0,0,0,0,0,9.3065571995415,5.28990979272033,8.23980824558033,0,0,0,0,0,1.19840044207362,0.768436610643109,2.07379224616955,2.02508907497536,1.47227472945967,5.42736870367227,5.96345060569357,9.79926393719632,11.2139201091337,5.51531271966013,37.4393995397922,22.9837208553338,25.3450779872802,7.12185953743047,6.31264740856627,4.68822033501084,17.3093459380856,12.380777420697,17.5717984943332,8.83885756421003,5.97961059356232,6.89677949553612,0.302904773332736,0.377857800533928,0,0,0,0,0,0,0.983110940922263,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8823550685081,8.16842156572475,0,0,0,0,31.6058249144176,37.972550033946,12.8167439155122,18.5992022605736,13.8086346958378,29.298114282898,23.5249831448249,0.203678727700633,0,0,0.420883711772948,0,0,0,0.90422890701429,0.95251098811859,1.0249097622788,1.03071897015702,4.13925393182425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,13.0379768109759,3.60166143327496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.77982123956051,7.03270119553219,0,0,0,0,0,0,0,0,0,0,0,253.843839973228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,4.63563255026274,0,0,0,0,0,0,0.169978429993855,0.139951452323658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,6.7770221114048,7.82552902062201,4.58316410751517,8.59265911718438,11.6464028361009,12.8416962556249,13.5004500046361,12.158672487054,13.5942722695261,17.6038505995619,0.103787347584177,1.99512436700516,0.853668028770671,0.729320151204882,0.628839487883947,2.20612210140017,0.888986911206461,0.412070114477788,1.60459604795908,0,1.01391719956096,2.26351609663291,0.749132059759059,0.704276676453562,1.09127391015665,0.476293691283074,1.0429589335037,0.77163688185482,0,1.17759136107518,0,0.887379030796687,0.476872379894642,0.726732083161643,0.846984423737976,0.423073039458382,0.365855945745545,0.789209134313529,1.35804113845862,0,1.06771516311757,0.788035859004508,0.409231043169689,0.464810523557898,0.192906610981141,1.74867404556562,0.935726433781634,2.14871054048298,0.57386499620653,0,0.231867835620421|short_description=p2@Gad1}} | ||
|EntrezGene=14415 | |||
|HGNC= | |||
|MCL_coexpression_id=93 | |||
|UniProt=P48318,D3Z1L8 | |||
|association_with_transcript=-4bp_to_ENSMUST00000094934,ENSMUST00000130604_5end | |||
|description=CAGE_peak_2_at_Gad1_5end | |||
|id=chr2:70400064..70400094,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.19e-19!23;CL:0000337!1.19e-19!23;CL:0000221!3.96e-13!44;CL:0000133!3.96e-13!44;CL:0002319!7.11e-13!43;CL:0000540!7.64e-12!33;CL:0000047!7.64e-12!33;CL:0000031!7.64e-12!33;CL:0000404!7.64e-12!33;CL:0000055!1.27e-09!50;CL:0000393!1.00e-08!39;CL:0000211!1.00e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.10e-29,23;CL:0000337,2.10e-29,23;CL:0000540,2.18e-18,33;CL:0000047,2.18e-18,33;CL:0000031,2.18e-18,33;CL:0000404,2.18e-18,33;CL:0000393,1.58e-14,39;CL:0000211,1.58e-14,39;CL:0002319,9.26e-14,43;CL:0000221,2.71e-13,44;CL:0000133,2.71e-13,44;CL:0002609,9.63e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.99e-30!75;UBERON:0001016!5.99e-30!75;UBERON:0001049!1.57e-29!52;UBERON:0005068!1.57e-29!52;UBERON:0006241!1.57e-29!52;UBERON:0007135!1.57e-29!52;UBERON:0001017!3.64e-29!73;UBERON:0005743!3.64e-29!73;UBERON:0000955!6.99e-29!50;UBERON:0006238!6.99e-29!50;UBERON:0000033!9.46e-29!63;UBERON:0002020!1.70e-28!34;UBERON:0002616!8.89e-28!49;UBERON:0002791!1.93e-24!29;UBERON:0003528!1.93e-24!29;UBERON:0001893!1.93e-24!29;UBERON:0002346!2.28e-24!71;UBERON:0003075!2.28e-24!71;UBERON:0007284!2.28e-24!71;UBERON:0004121!1.40e-23!102;UBERON:0000924!1.40e-23!102;UBERON:0006601!1.40e-23!102;UBERON:0003056!1.33e-22!49;UBERON:0003080!8.75e-22!40;UBERON:0002780!9.15e-21!39;UBERON:0001890!9.15e-21!39;UBERON:0006240!9.15e-21!39;UBERON:0000956!3.24e-17!21;UBERON:0001869!3.24e-17!21;UBERON:0000203!3.24e-17!21;UBERON:0007811!1.05e-16!86;UBERON:0002619!1.89e-14!17;UBERON:0000153!9.15e-14!94;UBERON:0002021!7.75e-10!10;UBERON:0000411!7.75e-10!10;UBERON:0001950!7.75e-10!10;UBERON:0002420!2.52e-08!8;UBERON:0007245!2.52e-08!8;UBERON:0010009!2.52e-08!8;UBERON:0010011!2.52e-08!8;UBERON:0000454!2.52e-08!8;UBERON:0003076!4.02e-08!12;UBERON:0003057!4.02e-08!12;UBERON:0002298!9.63e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.48e-42,54;UBERON:0001017,7.17e-39,73;UBERON:0002020,8.69e-39,34;UBERON:0001049,1.56e-38,52;UBERON:0005068,1.56e-38,52;UBERON:0006241,1.56e-38,52;UBERON:0007135,1.56e-38,52;UBERON:0001016,1.77e-37,75;UBERON:0002346,5.81e-34,64;UBERON:0003075,5.81e-34,64;UBERON:0007284,5.81e-34,64;UBERON:0000955,7.66e-33,47;UBERON:0006238,7.66e-33,47;UBERON:0003528,1.41e-32,29;UBERON:0002791,1.41e-32,29;UBERON:0001893,1.41e-32,29;UBERON:0002616,2.84e-31,46;UBERON:0004121,9.01e-31,95;UBERON:0000924,9.01e-31,95;UBERON:0006601,9.01e-31,95;UBERON:0010371,2.89e-28,73;UBERON:0003080,3.95e-28,40;UBERON:0002780,1.25e-26,39;UBERON:0001890,1.25e-26,39;UBERON:0006240,1.25e-26,39;UBERON:0003056,6.25e-26,49;UBERON:0000956,1.22e-21,21;UBERON:0001869,1.22e-21,21;UBERON:0000203,1.22e-21,21;UBERON:0010314,6.28e-20,92;UBERON:0002619,2.10e-17,17;UBERON:0002021,2.77e-14,10;UBERON:0000411,2.77e-14,10;UBERON:0001950,2.77e-14,10;UBERON:0002420,5.82e-12,8;UBERON:0007245,5.82e-12,8;UBERON:0010009,5.82e-12,8;UBERON:0010011,5.82e-12,8;UBERON:0000454,5.82e-12,8;UBERON:0000025,2.15e-11,114;UBERON:0003076,2.26e-10,12;UBERON:0003057,2.26e-10,12;UBERON:0004111,6.02e-10,122;UBERON:0002240,3.82e-08,6;UBERON:0005174,3.82e-08,6;UBERON:0001137,3.82e-08,6;UBERON:0000369,9.49e-08,5;UBERON:0002435,9.49e-08,5;UBERON:0000204,9.49e-08,5;UBERON:0010082,9.49e-08,5;UBERON:0002950,2.34e-07,4;UBERON:0001891,2.34e-07,4;UBERON:0009616,2.34e-07,4;UBERON:0010286,2.34e-07,4;UBERON:0001948,3.82e-07,5;UBERON:0002315,3.82e-07,5 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315462165358238,0.548457734422955,0,2.63634199468316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.878744730937887,0.58328969722285,0,0,0.503347818173209,0,0,0,0,0,9.3065571995415,5.28990979272033,8.23980824558033,0,0,0,0,0,1.19840044207362,0.768436610643109,2.07379224616955,2.02508907497536,1.47227472945967,5.42736870367227,5.96345060569357,9.79926393719632,11.2139201091337,5.51531271966013,37.4393995397922,22.9837208553338,25.3450779872802,7.12185953743047,6.31264740856627,4.68822033501084,17.3093459380856,12.380777420697,17.5717984943332,8.83885756421003,5.97961059356232,6.89677949553612,0.302904773332736,0.377857800533928,0,0,0,0,0,0,0.983110940922263,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8823550685081,8.16842156572475,0,0,0,0,31.6058249144176,37.972550033946,12.8167439155122,18.5992022605736,13.8086346958378,29.298114282898,23.5249831448249,0.203678727700633,0,0,0.420883711772948,0,0,0,0.90422890701429,0.95251098811859,1.0249097622788,1.03071897015702,4.13925393182425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,13.0379768109759,3.60166143327496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.77982123956051,7.03270119553219,0,0,0,0,0,0,0,0,0,0,0,253.843839973228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,4.63563255026274,0,0,0,0,0,0,0.169978429993855,0.139951452323658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,6.7770221114048,7.82552902062201,4.58316410751517,8.59265911718438,11.6464028361009,12.8416962556249,13.5004500046361,12.158672487054,13.5942722695261,17.6038505995619,0.103787347584177,1.99512436700516,0.853668028770671,0.729320151204882,0.628839487883947,2.20612210140017,0.888986911206461,0.412070114477788,1.60459604795908,0,1.01391719956096,2.26351609663291,0.749132059759059,0.704276676453562,1.09127391015665,0.476293691283074,1.0429589335037,0.77163688185482,0,1.17759136107518,0,0.887379030796687,0.476872379894642,0.726732083161643,0.846984423737976,0.423073039458382,0.365855945745545,0.789209134313529,1.35804113845862,0,1.06771516311757,0.788035859004508,0.409231043169689,0.464810523557898,0.192906610981141,1.74867404556562,0.935726433781634,2.14871054048298,0.57386499620653,0,0.231867835620421 | |||
|short_description=p2@Gad1 | |||
}} |
Revision as of 00:24, 14 September 2013
Short description: | p2@Gad1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gad1_5end |
Coexpression cluster: | MCL_coexpression_mm9:93 |
Association with transcript: | -4bp_to_ENSMUST00000094934, ENSMUST00000130604_5end |
EntrezGene: | Gad1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.10e-29 | 23 |
neuroblast (sensu Vertebrata) | 2.10e-29 | 23 |
neuron | 2.18e-18 | 33 |
neuronal stem cell | 2.18e-18 | 33 |
neuroblast | 2.18e-18 | 33 |
electrically signaling cell | 2.18e-18 | 33 |
electrically responsive cell | 1.58e-14 | 39 |
electrically active cell | 1.58e-14 | 39 |
neural cell | 9.26e-14 | 43 |
ectodermal cell | 2.71e-13 | 44 |
neurectodermal cell | 2.71e-13 | 44 |
neuron of cerebral cortex | 9.63e-08 | 6 |
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Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.