FFCP PHASE1:Mm9::chr2:32306916..32306990,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=227731|HGNC=|MCL_coexpression_id=99|UniProt=A2ASZ8|association_with_transcript=0bp_to_ENSMUST00000028160,ENSMUST00000113310,NM_001164357,NM_146118,uc008jfp.2,uc008jfq.2_5end|description=CAGE_peak_1_at_Slc25a25_5end|id=chr2:32306916..32306990,-|ontology_enrichment_celltype=CL:0000063!1.87e-11!66;CL:0000144!1.50e-10!121;CL:0000012!1.50e-10!121;CL:0000548!4.34e-10!115;CL:0000004!4.34e-10!115;CL:0000255!4.34e-10!115;CL:0002371!2.60e-09!118;CL:0000988!8.80e-08!32;CL:0002032!8.80e-08!32;CL:0000037!8.80e-08!32;CL:0000566!8.80e-08!32;CL:0000837!8.80e-08!32;CL:0000034!3.53e-07!97;CL:0000723!3.64e-07!91;CL:0000048!3.64e-07!91;CL:0002563!5.03e-07!9;CL:0002251!5.03e-07!9;CL:0002031!8.69e-07!25|ontology_enrichment_celltype_v019_2=CL:0000988,8.80e-08,32;CL:0002032,8.80e-08,32;CL:0000037,8.80e-08,32;CL:0000837,8.80e-08,32;CL:0000034,3.53e-07,97;CL:0000723,3.64e-07,91;CL:0000048,3.64e-07,91;CL:0002563,5.03e-07,9;CL:0002251,5.03e-07,9;CL:0002031,8.69e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000064!3.39e-15!99;UBERON:0002020!5.91e-11!34;UBERON:0002791!4.40e-10!29;UBERON:0003528!4.40e-10!29;UBERON:0001893!4.40e-10!29;UBERON:0000344!7.39e-09!15;UBERON:0000956!1.00e-08!21;UBERON:0001869!1.00e-08!21;UBERON:0000203!1.00e-08!21;UBERON:0000160!3.96e-08!43;UBERON:0001242!6.11e-08!13;UBERON:0000060!6.11e-08!13;UBERON:0001262!6.11e-08!13;UBERON:0004786!6.11e-08!13;UBERON:0002619!1.77e-07!17;UBERON:0001049!2.14e-07!52;UBERON:0005068!2.14e-07!52;UBERON:0006241!2.14e-07!52;UBERON:0007135!2.14e-07!52;UBERON:0004923!3.14e-07!24;UBERON:0003350!5.03e-07!9;UBERON:0004808!5.03e-07!9;UBERON:0001277!5.03e-07!9;UBERON:0000955!5.47e-07!50;UBERON:0006238!5.47e-07!50;UBERON:0001017!9.96e-07!73;UBERON:0005743!9.96e-07!73|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.91e-11,34;UBERON:0011216,1.44e-10,194;UBERON:0003528,4.40e-10,29;UBERON:0002791,4.40e-10,29;UBERON:0001893,4.40e-10,29;UBERON:0000344,7.39e-09,15;UBERON:0000956,1.00e-08,21;UBERON:0001869,1.00e-08,21;UBERON:0000203,1.00e-08,21;UBERON:0000160,2.20e-08,31;UBERON:0001242,6.11e-08,13;UBERON:0001262,6.11e-08,13;UBERON:0004786,6.11e-08,13;UBERON:0000073,1.38e-07,54;UBERON:0002619,1.77e-07,17;UBERON:0001049,2.14e-07,52;UBERON:0005068,2.14e-07,52;UBERON:0006241,2.14e-07,52;UBERON:0007135,2.14e-07,52;UBERON:0004923,3.14e-07,24;UBERON:0003350,5.03e-07,9;UBERON:0004808,5.03e-07,9;UBERON:0001277,5.03e-07,9;UBERON:0000955,8.67e-07,47;UBERON:0006238,8.67e-07,47;UBERON:0001017,9.96e-07,73|phase1_expression=10.4096750618116,58.6278684834127,57.3299041630815,33.875991666365,63.6137577031861,38.7801118116465,30.8368685586094,26.8576512758479,46.46027831005,67.8787126333781,12.3276937122364,12.2849124852818,16.4352700733957,20.5437945684644,11.3257319017325,11.3386149738303,17.4890469532037,10.4102514568218,11.9289557236993,15.7024171165271,13.8620562946244,9.03547655928056,8.097193463307,18.7191134668286,24.0879745120529,43.0673973086265,35.3224836850441,29.9505013433386,12.7315691035771,23.6908321974335,15.5211357458713,10.7955214488137,16.6067492647834,15.8481681015439,27.7297554961224,24.2702582223399,26.1336776015832,7.95210098400125,8.5946887897618,4.18818995179039,7.05877785637217,2.04913645487534,8.25367600152961,3.27331726736501,3.54819259268301,5.13930906052708,9.38869613217647,15.4797861030117,13.6205433295373,10.6936444490856,6.99932108126813,7.18762821824858,25.6707387268337,42.071004236658,33.6093799142464,10.8048963135098,4.58453503902011,7.73508138416164,17.601532094785,19.5726662330652,15.8457850876545,15.2480039431109,6.22506357277798,19.3478439215501,12.8552627133707,17.7620028736525,20.0732074047331,15.7529505181837,16.279269132431,16.2007125998029,17.6672967535161,13.139945282575,13.693849539,14.6988959057945,17.0604938412461,20.2228133054205,9.91042928994498,11.4918604276669,12.595735727012,15.9582408153535,14.2720724019759,21.8783615633839,13.1216009530649,10.1297269805702,9.47349136216223,13.8475435172624,12.1015928679237,16.9623495701024,10.1473099066467,7.10372665003784,34.4938741554997,10.3250865237766,248.869508137037,9.17495425784289,4.54843492213368,8.96053774194671,8.70755404816862,4.94247935476367,4.67614808285164,5.65343319216544,10.563256483251,1.28326477414318,5.09610479413291,14.2213340630666,11.4740251735943,11.1478340809043,13.6491600153991,9.47726201668198,4.91981978929626,14.8442139064825,9.71517829890361,10.0473607843007,12.6838523490832,14.4693734930518,8.58397562090645,14.702991185572,13.3485282576562,3.47038456607788,9.73071607144862,7.44127509758082,8.39197770149496,8.24287930329878,14.9113408974498,8.78342391034641,8.79676168616511,17.3710797541842,23.6035795276663,23.9961092397363,16.6461997465715,10.9347166765521,21.0450277296568,14.4502504929794,15.6441888173049,18.4115129277838,12.0517065844545,14.6017136760982,6.72139801412087,8.45967400148633,10.867078612648,13.2578369208479,5.33493816147085,6.43725892413724,5.40186389416048,6.48030716693575,6.5995404176788,7.174368335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| ||
|EntrezGene=227731 | |||
|HGNC= | |||
|MCL_coexpression_id=99 | |||
|UniProt=A2ASZ8 | |||
|association_with_transcript=0bp_to_ENSMUST00000028160,ENSMUST00000113310,NM_001164357,NM_146118,uc008jfp.2,uc008jfq.2_5end | |||
|description=CAGE_peak_1_at_Slc25a25_5end | |||
|id=chr2:32306916..32306990,- | |||
|ontology_enrichment_celltype=CL:0000063!1.87e-11!66;CL:0000144!1.50e-10!121;CL:0000012!1.50e-10!121;CL:0000548!4.34e-10!115;CL:0000004!4.34e-10!115;CL:0000255!4.34e-10!115;CL:0002371!2.60e-09!118;CL:0000988!8.80e-08!32;CL:0002032!8.80e-08!32;CL:0000037!8.80e-08!32;CL:0000566!8.80e-08!32;CL:0000837!8.80e-08!32;CL:0000034!3.53e-07!97;CL:0000723!3.64e-07!91;CL:0000048!3.64e-07!91;CL:0002563!5.03e-07!9;CL:0002251!5.03e-07!9;CL:0002031!8.69e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,8.80e-08,32;CL:0002032,8.80e-08,32;CL:0000037,8.80e-08,32;CL:0000837,8.80e-08,32;CL:0000034,3.53e-07,97;CL:0000723,3.64e-07,91;CL:0000048,3.64e-07,91;CL:0002563,5.03e-07,9;CL:0002251,5.03e-07,9;CL:0002031,8.69e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000064!3.39e-15!99;UBERON:0002020!5.91e-11!34;UBERON:0002791!4.40e-10!29;UBERON:0003528!4.40e-10!29;UBERON:0001893!4.40e-10!29;UBERON:0000344!7.39e-09!15;UBERON:0000956!1.00e-08!21;UBERON:0001869!1.00e-08!21;UBERON:0000203!1.00e-08!21;UBERON:0000160!3.96e-08!43;UBERON:0001242!6.11e-08!13;UBERON:0000060!6.11e-08!13;UBERON:0001262!6.11e-08!13;UBERON:0004786!6.11e-08!13;UBERON:0002619!1.77e-07!17;UBERON:0001049!2.14e-07!52;UBERON:0005068!2.14e-07!52;UBERON:0006241!2.14e-07!52;UBERON:0007135!2.14e-07!52;UBERON:0004923!3.14e-07!24;UBERON:0003350!5.03e-07!9;UBERON:0004808!5.03e-07!9;UBERON:0001277!5.03e-07!9;UBERON:0000955!5.47e-07!50;UBERON:0006238!5.47e-07!50;UBERON:0001017!9.96e-07!73;UBERON:0005743!9.96e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.91e-11,34;UBERON:0011216,1.44e-10,194;UBERON:0003528,4.40e-10,29;UBERON:0002791,4.40e-10,29;UBERON:0001893,4.40e-10,29;UBERON:0000344,7.39e-09,15;UBERON:0000956,1.00e-08,21;UBERON:0001869,1.00e-08,21;UBERON:0000203,1.00e-08,21;UBERON:0000160,2.20e-08,31;UBERON:0001242,6.11e-08,13;UBERON:0001262,6.11e-08,13;UBERON:0004786,6.11e-08,13;UBERON:0000073,1.38e-07,54;UBERON:0002619,1.77e-07,17;UBERON:0001049,2.14e-07,52;UBERON:0005068,2.14e-07,52;UBERON:0006241,2.14e-07,52;UBERON:0007135,2.14e-07,52;UBERON:0004923,3.14e-07,24;UBERON:0003350,5.03e-07,9;UBERON:0004808,5.03e-07,9;UBERON:0001277,5.03e-07,9;UBERON:0000955,8.67e-07,47;UBERON:0006238,8.67e-07,47;UBERON:0001017,9.96e-07,73 | |||
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| |||
|short_description=p1@Slc25a25 | |||
}} |
Revision as of 23:47, 13 September 2013
Short description: | p1@Slc25a25 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc25a25_5end |
Coexpression cluster: | MCL_coexpression_mm9:99 |
Association with transcript: | 0bp_to_ENSMUST00000028160, ENSMUST00000113310, NM_001164357, NM_146118, uc008jfp.2, uc008jfq.2_5end |
EntrezGene: | Slc25a25 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 8.80e-08 | 32 |
hematopoietic oligopotent progenitor cell | 8.80e-08 | 32 |
hematopoietic stem cell | 8.80e-08 | 32 |
hematopoietic multipotent progenitor cell | 8.80e-08 | 32 |
stem cell | 3.53e-07 | 97 |
somatic stem cell | 3.64e-07 | 91 |
multi fate stem cell | 3.64e-07 | 91 |
intestinal epithelial cell | 5.03e-07 | 9 |
epithelial cell of alimentary canal | 5.03e-07 | 9 |
hematopoietic lineage restricted progenitor cell | 8.69e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
gray matter | 5.91e-11 | 34 |
organ system subdivision | 1.44e-10 | 194 |
brain grey matter | 4.40e-10 | 29 |
regional part of telencephalon | 4.40e-10 | 29 |
telencephalon | 4.40e-10 | 29 |
mucosa | 7.39e-09 | 15 |
cerebral cortex | 1.00e-08 | 21 |
cerebral hemisphere | 1.00e-08 | 21 |
pallium | 1.00e-08 | 21 |
intestine | 2.20e-08 | 31 |
intestinal mucosa | 6.11e-08 | 13 |
wall of intestine | 6.11e-08 | 13 |
gastrointestinal system mucosa | 6.11e-08 | 13 |
regional part of nervous system | 1.38e-07 | 54 |
regional part of cerebral cortex | 1.77e-07 | 17 |
neural tube | 2.14e-07 | 52 |
neural rod | 2.14e-07 | 52 |
future spinal cord | 2.14e-07 | 52 |
neural keel | 2.14e-07 | 52 |
organ component layer | 3.14e-07 | 24 |
epithelium of mucosa | 5.03e-07 | 9 |
gastrointestinal system epithelium | 5.03e-07 | 9 |
intestinal epithelium | 5.03e-07 | 9 |
brain | 8.67e-07 | 47 |
future brain | 8.67e-07 | 47 |
central nervous system | 9.96e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.