FFCP PHASE1:Mm9::chr19:18805120..18805139,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2250|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:18805120..18805139,+|id=chr19:18805120..18805139,+|ontology_enrichment_celltype=CL:0000239!5.26e-18!6;CL:0000677!5.26e-18!6;CL:0000212!5.26e-18!6;CL:0000584!5.26e-18!6;CL:0000075!2.05e-15!7;CL:0000473!4.02e-14!3;CL:0000627!4.02e-14!3;CL:0000682!4.02e-14!3;CL:0002563!5.92e-12!9;CL:0002251!5.92e-12!9;CL:0000066!3.13e-10!25;CL:0002076!4.36e-07!15|ontology_enrichment_celltype_v019_2=CL:0000682,2.85e-21,3;CL:0000239,2.21e-18,6;CL:0000677,2.21e-18,6;CL:0000584,2.21e-18,6;CL:0000075,8.33e-16,7;CL:0000066,6.43e-13,25;CL:0002563,2.31e-12,9;CL:0002251,2.31e-12,9;CL:0000473,1.82e-09,7;CL:0002076,1.63e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!2.48e-22!15;UBERON:0001242!9.53e-16!13;UBERON:0000060!9.53e-16!13;UBERON:0001262!9.53e-16!13;UBERON:0004786!9.53e-16!13;UBERON:0000160!1.71e-14!43;UBERON:0004923!1.81e-13!24;UBERON:0003350!5.92e-12!9;UBERON:0004808!5.92e-12!9;UBERON:0001277!5.92e-12!9;UBERON:0005409!7.69e-12!59;UBERON:0000485!9.57e-10!11;UBERON:0001962!1.00e-09!2;UBERON:0001961!1.00e-09!2;UBERON:0001744!1.00e-09!2;UBERON:0001155!2.94e-09!2;UBERON:0000059!2.94e-09!2;UBERON:0000331!7.77e-07!3;UBERON:0002116!7.77e-07!3;UBERON:0001204!7.77e-07!3;UBERON:0001168!7.77e-07!3;UBERON:0002465!9.45e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.85e-28,15;UBERON:0001242,1.51e-18,13;UBERON:0001262,1.51e-18,13;UBERON:0004786,1.51e-18,13;UBERON:0004923,2.23e-17,24;UBERON:0001962,2.29e-14,2;UBERON:0001961,2.29e-14,2;UBERON:0001744,2.29e-14,2;UBERON:0003350,2.31e-12,9;UBERON:0004808,2.31e-12,9;UBERON:0001277,2.31e-12,9;UBERON:0000160,3.56e-10,31;UBERON:0000485,3.65e-10,11;UBERON:0000331,5.01e-10,3;UBERON:0002116,5.01e-10,3;UBERON:0001204,5.01e-10,3;UBERON:0001168,5.01e-10,3;UBERON:0002465,6.83e-10,3;UBERON:0005409,1.43e-08,47;UBERON:0003199,4.10e-08,1;UBERON:0002108,9.75e-08,4;UBERON:0001153,1.05e-07,1;UBERON:0001045,1.05e-07,1|phase1_expression=0,6.2815573375085,5.91499011206397,0.30246421130683,0,3.02182689441402,3.73780224952841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67982572424835,4.12936705920906,6.31655160526522,5.1691439539089,3.878482188346,1.90023419456374,0,7.98229838359097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0.898819408654221,0,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9245775428449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0|short_description=p@chr19:18805120..18805139,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2250 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:18805120..18805139,+ | |||
|id=chr19:18805120..18805139,+ | |||
|ontology_enrichment_celltype=CL:0000239!5.26e-18!6;CL:0000677!5.26e-18!6;CL:0000212!5.26e-18!6;CL:0000584!5.26e-18!6;CL:0000075!2.05e-15!7;CL:0000473!4.02e-14!3;CL:0000627!4.02e-14!3;CL:0000682!4.02e-14!3;CL:0002563!5.92e-12!9;CL:0002251!5.92e-12!9;CL:0000066!3.13e-10!25;CL:0002076!4.36e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.85e-21,3;CL:0000239,2.21e-18,6;CL:0000677,2.21e-18,6;CL:0000584,2.21e-18,6;CL:0000075,8.33e-16,7;CL:0000066,6.43e-13,25;CL:0002563,2.31e-12,9;CL:0002251,2.31e-12,9;CL:0000473,1.82e-09,7;CL:0002076,1.63e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!2.48e-22!15;UBERON:0001242!9.53e-16!13;UBERON:0000060!9.53e-16!13;UBERON:0001262!9.53e-16!13;UBERON:0004786!9.53e-16!13;UBERON:0000160!1.71e-14!43;UBERON:0004923!1.81e-13!24;UBERON:0003350!5.92e-12!9;UBERON:0004808!5.92e-12!9;UBERON:0001277!5.92e-12!9;UBERON:0005409!7.69e-12!59;UBERON:0000485!9.57e-10!11;UBERON:0001962!1.00e-09!2;UBERON:0001961!1.00e-09!2;UBERON:0001744!1.00e-09!2;UBERON:0001155!2.94e-09!2;UBERON:0000059!2.94e-09!2;UBERON:0000331!7.77e-07!3;UBERON:0002116!7.77e-07!3;UBERON:0001204!7.77e-07!3;UBERON:0001168!7.77e-07!3;UBERON:0002465!9.45e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.85e-28,15;UBERON:0001242,1.51e-18,13;UBERON:0001262,1.51e-18,13;UBERON:0004786,1.51e-18,13;UBERON:0004923,2.23e-17,24;UBERON:0001962,2.29e-14,2;UBERON:0001961,2.29e-14,2;UBERON:0001744,2.29e-14,2;UBERON:0003350,2.31e-12,9;UBERON:0004808,2.31e-12,9;UBERON:0001277,2.31e-12,9;UBERON:0000160,3.56e-10,31;UBERON:0000485,3.65e-10,11;UBERON:0000331,5.01e-10,3;UBERON:0002116,5.01e-10,3;UBERON:0001204,5.01e-10,3;UBERON:0001168,5.01e-10,3;UBERON:0002465,6.83e-10,3;UBERON:0005409,1.43e-08,47;UBERON:0003199,4.10e-08,1;UBERON:0002108,9.75e-08,4;UBERON:0001153,1.05e-07,1;UBERON:0001045,1.05e-07,1 | |||
|phase1_expression=0,6.2815573375085,5.91499011206397,0.30246421130683,0,3.02182689441402,3.73780224952841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67982572424835,4.12936705920906,6.31655160526522,5.1691439539089,3.878482188346,1.90023419456374,0,7.98229838359097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0.898819408654221,0,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9245775428449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:18805120..18805139,+ | |||
}} |
Revision as of 17:08, 13 September 2013
Short description: | p@chr19:18805120..18805139, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:18805120..18805139, + |
Coexpression cluster: | MCL_coexpression_mm9:2250 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.85e-21 | 3 |
brush border epithelial cell | 2.21e-18 | 6 |
gut absorptive cell | 2.21e-18 | 6 |
enterocyte | 2.21e-18 | 6 |
columnar/cuboidal epithelial cell | 8.33e-16 | 7 |
epithelial cell | 6.43e-13 | 25 |
intestinal epithelial cell | 2.31e-12 | 9 |
epithelial cell of alimentary canal | 2.31e-12 | 9 |
defensive cell | 1.82e-09 | 7 |
endo-epithelial cell | 1.63e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.85e-28 | 15 |
intestinal mucosa | 1.51e-18 | 13 |
wall of intestine | 1.51e-18 | 13 |
gastrointestinal system mucosa | 1.51e-18 | 13 |
organ component layer | 2.23e-17 | 24 |
gut-associated lymphoid tissue | 2.29e-14 | 2 |
mucosa-associated lymphoid tissue | 2.29e-14 | 2 |
lymphoid tissue | 2.29e-14 | 2 |
epithelium of mucosa | 2.31e-12 | 9 |
gastrointestinal system epithelium | 2.31e-12 | 9 |
intestinal epithelium | 2.31e-12 | 9 |
intestine | 3.56e-10 | 31 |
simple columnar epithelium | 3.65e-10 | 11 |
ileal mucosa | 5.01e-10 | 3 |
ileum | 5.01e-10 | 3 |
mucosa of small intestine | 5.01e-10 | 3 |
wall of small intestine | 5.01e-10 | 3 |
lymphoid system | 6.83e-10 | 3 |
gastrointestinal system | 1.43e-08 | 47 |
egg chamber | 4.10e-08 | 1 |
small intestine | 9.75e-08 | 4 |
caecum | 1.05e-07 | 1 |
midgut | 1.05e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.