FFCP PHASE1:Mm9::chr18:54586672..54586676,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=478|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr18:54586672..54586676,+|id=chr18:54586672..54586676,+|ontology_enrichment_celltype=CL:0000239!9.11e-20!6;CL:0000677!9.11e-20!6;CL:0000212!9.11e-20!6;CL:0000584!9.11e-20!6;CL:0000075!6.23e-17!7;CL:0000473!1.35e-14!3;CL:0000627!1.35e-14!3;CL:0000682!1.35e-14!3;CL:0000066!5.77e-14!25;CL:0002563!3.81e-13!9;CL:0002251!3.81e-13!9;CL:0002076!7.35e-11!15;CL:0000223!4.97e-08!20|ontology_enrichment_celltype_v019_2=CL:0000239,3.13e-15,6;CL:0000677,3.13e-15,6;CL:0000584,3.13e-15,6;CL:0000075,3.73e-13,7;CL:0002563,2.23e-10,9;CL:0002251,2.23e-10,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!4.36e-37!15;UBERON:0001242!1.64e-28!13;UBERON:0000060!1.64e-28!13;UBERON:0001262!1.64e-28!13;UBERON:0004786!1.64e-28!13;UBERON:0004923!1.37e-22!24;UBERON:0000331!4.61e-15!3;UBERON:0002116!4.61e-15!3;UBERON:0001204!4.61e-15!3;UBERON:0001168!4.61e-15!3;UBERON:0000160!4.78e-14!43;UBERON:0003350!3.81e-13!9;UBERON:0004808!3.81e-13!9;UBERON:0001277!3.81e-13!9;UBERON:0001962!6.66e-11!2;UBERON:0001961!6.66e-11!2;UBERON:0001744!6.66e-11!2;UBERON:0000485!9.94e-11!11;UBERON:0005409!9.98e-10!59;UBERON:0002465!1.52e-07!3;UBERON:0001007!5.35e-07!128;UBERON:0001555!5.35e-07!128;UBERON:0007026!5.35e-07!128;UBERON:0004119!7.52e-07!130;UBERON:0000925!7.52e-07!130;UBERON:0006595!7.52e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000344,9.22e-32,15;UBERON:0001962,1.59e-20,2;UBERON:0001961,1.59e-20,2;UBERON:0001744,1.59e-20,2;UBERON:0004923,7.39e-20,24;UBERON:0001242,5.23e-19,13;UBERON:0001262,5.23e-19,13;UBERON:0004786,5.23e-19,13;UBERON:0000331,3.14e-14,3;UBERON:0002116,3.14e-14,3;UBERON:0001204,3.14e-14,3;UBERON:0001168,3.14e-14,3;UBERON:0002465,4.93e-14,3;UBERON:0003199,2.31e-11,1;UBERON:0000160,2.36e-11,31;UBERON:0002108,6.46e-11,4;UBERON:0003350,2.23e-10,9;UBERON:0004808,2.23e-10,9;UBERON:0001277,2.23e-10,9;UBERON:0000485,1.33e-08,11;UBERON:0005409,1.84e-07,47|phase1_expression=0,0.348975407639361,0.454999239389536,1.20985684522732,2.00358291978539,0,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59992422793407,3.67054849707472,0.57423196411502,1.29228598847722,0.430942465371778,5.89072600314759,0.252030129759931,1.99557459589774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,1.85115396664481,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr18:54586672..54586676,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=478 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr18:54586672..54586676,+ | |||
|id=chr18:54586672..54586676,+ | |||
|ontology_enrichment_celltype=CL:0000239!9.11e-20!6;CL:0000677!9.11e-20!6;CL:0000212!9.11e-20!6;CL:0000584!9.11e-20!6;CL:0000075!6.23e-17!7;CL:0000473!1.35e-14!3;CL:0000627!1.35e-14!3;CL:0000682!1.35e-14!3;CL:0000066!5.77e-14!25;CL:0002563!3.81e-13!9;CL:0002251!3.81e-13!9;CL:0002076!7.35e-11!15;CL:0000223!4.97e-08!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,3.13e-15,6;CL:0000677,3.13e-15,6;CL:0000584,3.13e-15,6;CL:0000075,3.73e-13,7;CL:0002563,2.23e-10,9;CL:0002251,2.23e-10,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!4.36e-37!15;UBERON:0001242!1.64e-28!13;UBERON:0000060!1.64e-28!13;UBERON:0001262!1.64e-28!13;UBERON:0004786!1.64e-28!13;UBERON:0004923!1.37e-22!24;UBERON:0000331!4.61e-15!3;UBERON:0002116!4.61e-15!3;UBERON:0001204!4.61e-15!3;UBERON:0001168!4.61e-15!3;UBERON:0000160!4.78e-14!43;UBERON:0003350!3.81e-13!9;UBERON:0004808!3.81e-13!9;UBERON:0001277!3.81e-13!9;UBERON:0001962!6.66e-11!2;UBERON:0001961!6.66e-11!2;UBERON:0001744!6.66e-11!2;UBERON:0000485!9.94e-11!11;UBERON:0005409!9.98e-10!59;UBERON:0002465!1.52e-07!3;UBERON:0001007!5.35e-07!128;UBERON:0001555!5.35e-07!128;UBERON:0007026!5.35e-07!128;UBERON:0004119!7.52e-07!130;UBERON:0000925!7.52e-07!130;UBERON:0006595!7.52e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,9.22e-32,15;UBERON:0001962,1.59e-20,2;UBERON:0001961,1.59e-20,2;UBERON:0001744,1.59e-20,2;UBERON:0004923,7.39e-20,24;UBERON:0001242,5.23e-19,13;UBERON:0001262,5.23e-19,13;UBERON:0004786,5.23e-19,13;UBERON:0000331,3.14e-14,3;UBERON:0002116,3.14e-14,3;UBERON:0001204,3.14e-14,3;UBERON:0001168,3.14e-14,3;UBERON:0002465,4.93e-14,3;UBERON:0003199,2.31e-11,1;UBERON:0000160,2.36e-11,31;UBERON:0002108,6.46e-11,4;UBERON:0003350,2.23e-10,9;UBERON:0004808,2.23e-10,9;UBERON:0001277,2.23e-10,9;UBERON:0000485,1.33e-08,11;UBERON:0005409,1.84e-07,47 | |||
|phase1_expression=0,0.348975407639361,0.454999239389536,1.20985684522732,2.00358291978539,0,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59992422793407,3.67054849707472,0.57423196411502,1.29228598847722,0.430942465371778,5.89072600314759,0.252030129759931,1.99557459589774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,1.85115396664481,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:54586672..54586676,+ | |||
}} |
Revision as of 16:20, 13 September 2013
Short description: | p@chr18:54586672..54586676, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:54586672..54586676, + |
Coexpression cluster: | MCL_coexpression_mm9:478 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 3.13e-15 | 6 |
gut absorptive cell | 3.13e-15 | 6 |
enterocyte | 3.13e-15 | 6 |
columnar/cuboidal epithelial cell | 3.73e-13 | 7 |
intestinal epithelial cell | 2.23e-10 | 9 |
epithelial cell of alimentary canal | 2.23e-10 | 9 |
Ontology term | p-value | n |
---|---|---|
mucosa | 9.22e-32 | 15 |
gut-associated lymphoid tissue | 1.59e-20 | 2 |
mucosa-associated lymphoid tissue | 1.59e-20 | 2 |
lymphoid tissue | 1.59e-20 | 2 |
organ component layer | 7.39e-20 | 24 |
intestinal mucosa | 5.23e-19 | 13 |
wall of intestine | 5.23e-19 | 13 |
gastrointestinal system mucosa | 5.23e-19 | 13 |
ileal mucosa | 3.14e-14 | 3 |
ileum | 3.14e-14 | 3 |
mucosa of small intestine | 3.14e-14 | 3 |
wall of small intestine | 3.14e-14 | 3 |
lymphoid system | 4.93e-14 | 3 |
egg chamber | 2.31e-11 | 1 |
intestine | 2.36e-11 | 31 |
small intestine | 6.46e-11 | 4 |
epithelium of mucosa | 2.23e-10 | 9 |
gastrointestinal system epithelium | 2.23e-10 | 9 |
intestinal epithelium | 2.23e-10 | 9 |
simple columnar epithelium | 1.33e-08 | 11 |
gastrointestinal system | 1.84e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.