FFCP PHASE1:Mm9::chr17:47642123..47642131,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12445|HGNC=|MCL_coexpression_id=2215|UniProt=P30282,Q3TSW4,Q3TWY0|association_with_transcript=123bp_to_ENSMUST00000171031,NM_001081635,NM_001081636,uc008cvk.1,uc008cvl.1,uc008cvm.1_5end|description=CAGE_peak_11_at_Ccnd3_5end|id=chr17:47642123..47642131,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000838,2.38e-07,12|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!2.15e-10!131;UBERON:0009142!2.15e-10!131;UBERON:0001004!7.98e-09!42;UBERON:0000926!1.43e-08!193;UBERON:0004120!1.43e-08!193;UBERON:0006603!1.43e-08!193;UBERON:0000065!2.15e-08!41;UBERON:0000077!6.91e-08!97;UBERON:0001041!9.99e-08!92;UBERON:0000464!9.20e-07!57|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.34e-13,42;UBERON:0000065,1.91e-12,41;UBERON:0003408,1.14e-09,24;UBERON:0002370,6.68e-09,23;UBERON:0000974,6.68e-09,23;UBERON:0004807,6.68e-09,23;UBERON:0005058,6.68e-09,23;UBERON:0003351,6.68e-09,23;UBERON:0009113,6.68e-09,23;UBERON:0003295,6.68e-09,23;UBERON:0009722,6.68e-09,23;UBERON:0005562,6.68e-09,23;UBERON:0007690,6.68e-09,23;UBERON:0006562,2.39e-08,24;UBERON:0001557,2.39e-08,24;UBERON:0001042,2.39e-08,24;UBERON:0008814,2.39e-08,24;UBERON:0009145,2.39e-08,24;UBERON:0005153,5.17e-08,17;UBERON:0004177,6.99e-08,29;UBERON:0005057,6.99e-08,29;UBERON:0000072,6.01e-07,27;UBERON:0002048,7.17e-07,14;UBERON:0000117,7.17e-07,14;UBERON:0000171,7.17e-07,14;UBERON:0000170,7.17e-07,14;UBERON:0005597,7.17e-07,14;UBERON:0000118,7.17e-07,14|phase1_expression=0.160148847104794,0,0,0,0,0.503637815735669,0.233612640595526,4.00282302668886,0.84473233291,1.40438715793196,1.54096171402954,0.478632953972018,5.64962408772979,5.33264454755884,0.666219523631325,1.41732687172878,0,2.68142840554502,3.56497527374921,3.81950686618227,1.36069264241712,1.29078236561151,0,0.159992422793407,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0.61506478758457,0,0,0.166234645358492,0.204169356262369,5.4409111995798,4.6880120671428,1.57057123192139,0.588231488031014,4.09827290975067,4.36959317728038,0.125896817975577,0.101376931219515,0.183546752161682,2.34717403304412,1.52617609466313,1.09843091367236,0.58328969722285,1.25987779462826,0,3.35565212115473,2.90144856804538,2.35265659399725,0.771778308107841,1.14613375975503,1.03134418455488,0,0,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0.103689612308478,0.135005938331691,0,0.285650984403804,0.220868540951614,0.122490799214954,0,0,0,0.127687338085188,0.307213066512487,0,0.182975287204819,0,0.558365998002762,1.12552522006336,0.45839474333043,0,0.427115042397309,0.186399445825301,0.151452386666368,0.0755715601067855,0.289864488701678,0,0,0.539703191637817,0.649776417447669,0.896053774194671,0.702222100658759,0,0,0,0,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0.68510327831436,3.10725460376606,0.742210695324124,0,0,0.230615497256059,0.301445281105245,1.17588707135705,0.502666365318702,0.494389935468748,1.15679485535929,1.76922110389975,0.161766849947409,1.32504911076236,0.484875253135222,0,0.292780797011547,0.41889341362691,0,0.239630249011841,0,0.254140454146129,0.748953197024114,2.28750301409313,0.251308704225729,0.347648640384553,0.511430914660661,0.41557608911912,0.973447578406546,0.712875546952214,1.7416975885413,1.76905930903572,0.210441855886474,0.390361328888111,0,0.180062129805349,0.452114453507145,0.408218994907967,0,0,0,0,0.189106080167819,0,0.219195732427575,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0.257347907114715,0.284163499395593,0,0.234526059981096,0,0,0,0,0.465067889500816,0,0.700592054203017,0.329119699826961,0.32833492815819,0.56748166682099,0.877199924551994,0.219550115291051,0.671032093801859,0.630869845692382,0.205809224758569,0,0.264450566663544,0.426576501070468,0.696710015581316,0.257734922644187,0.403367049246685,0.667134131534611,0.570676878337677,0,0.494096864172033,0,0.596869416123452,0.779856348476481,0,0,0.597423819763102,0.189667900953082,0.342745537829186,0,0.407302655690628,0.581857461502877,1.1221731182451,0.69560190836683,0.590440591918409,0.627994911365499,0.863780147452604,0.889357881261447,0.500535317148282,0,0.449724224769707,0,0.241177159752417,0.50925170356284,0.287696137450811,1.45921704097532,1.09824565275233,0,0.744281895337007,0.624075346229121,0.505157755894224,0.179397413521912,0.964887042726734,3.32555742299888,0.37898282354097,0,0.169745085775188,1.17345124144251,0.670025029767263,1.90434912708811,2.92700471786698,2.04925687338048,1.55025282754142,1.2756381492599,3.27726629431476,1.89953480052485,3.32692834737477,0,0.54390568381871,2.45882136509518,2.75936746304733,0.481651769963376,0.820481806145422,0.163934945376675,0.504941854408746,0,0,0.430846795465598,1.19484398976276,0.222798674082394,0,0.404810701674894,0,0,0,1.27746076687442,0.534196811001766,1.14020871547503,1.48473110675282,2.65490276679926,0.242780636154981,0.302323556964751,0.943025398779491,0.885905678642318,0.307435147943927,1.29214146584111,0.727067458955011,0.712994756769443,0.632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| ||
|EntrezGene=12445 | |||
|HGNC= | |||
|MCL_coexpression_id=2215 | |||
|UniProt=P30282,Q3TSW4,Q3TWY0 | |||
|association_with_transcript=123bp_to_ENSMUST00000171031,NM_001081635,NM_001081636,uc008cvk.1,uc008cvl.1,uc008cvm.1_5end | |||
|description=CAGE_peak_11_at_Ccnd3_5end | |||
|id=chr17:47642123..47642131,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.38e-07,12 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!2.15e-10!131;UBERON:0009142!2.15e-10!131;UBERON:0001004!7.98e-09!42;UBERON:0000926!1.43e-08!193;UBERON:0004120!1.43e-08!193;UBERON:0006603!1.43e-08!193;UBERON:0000065!2.15e-08!41;UBERON:0000077!6.91e-08!97;UBERON:0001041!9.99e-08!92;UBERON:0000464!9.20e-07!57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.34e-13,42;UBERON:0000065,1.91e-12,41;UBERON:0003408,1.14e-09,24;UBERON:0002370,6.68e-09,23;UBERON:0000974,6.68e-09,23;UBERON:0004807,6.68e-09,23;UBERON:0005058,6.68e-09,23;UBERON:0003351,6.68e-09,23;UBERON:0009113,6.68e-09,23;UBERON:0003295,6.68e-09,23;UBERON:0009722,6.68e-09,23;UBERON:0005562,6.68e-09,23;UBERON:0007690,6.68e-09,23;UBERON:0006562,2.39e-08,24;UBERON:0001557,2.39e-08,24;UBERON:0001042,2.39e-08,24;UBERON:0008814,2.39e-08,24;UBERON:0009145,2.39e-08,24;UBERON:0005153,5.17e-08,17;UBERON:0004177,6.99e-08,29;UBERON:0005057,6.99e-08,29;UBERON:0000072,6.01e-07,27;UBERON:0002048,7.17e-07,14;UBERON:0000117,7.17e-07,14;UBERON:0000171,7.17e-07,14;UBERON:0000170,7.17e-07,14;UBERON:0005597,7.17e-07,14;UBERON:0000118,7.17e-07,14 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0.503637815735669,0.233612640595526,4.00282302668886,0.84473233291,1.40438715793196,1.54096171402954,0.478632953972018,5.64962408772979,5.33264454755884,0.666219523631325,1.41732687172878,0,2.68142840554502,3.56497527374921,3.81950686618227,1.36069264241712,1.29078236561151,0,0.159992422793407,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0.61506478758457,0,0,0.166234645358492,0.204169356262369,5.4409111995798,4.6880120671428,1.57057123192139,0.588231488031014,4.09827290975067,4.36959317728038,0.125896817975577,0.101376931219515,0.183546752161682,2.34717403304412,1.52617609466313,1.09843091367236,0.58328969722285,1.25987779462826,0,3.35565212115473,2.90144856804538,2.35265659399725,0.771778308107841,1.14613375975503,1.03134418455488,0,0,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0.103689612308478,0.135005938331691,0,0.285650984403804,0.220868540951614,0.122490799214954,0,0,0,0.127687338085188,0.307213066512487,0,0.182975287204819,0,0.558365998002762,1.12552522006336,0.45839474333043,0,0.427115042397309,0.186399445825301,0.151452386666368,0.0755715601067855,0.289864488701678,0,0,0.539703191637817,0.649776417447669,0.896053774194671,0.702222100658759,0,0,0,0,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0.68510327831436,3.10725460376606,0.742210695324124,0,0,0.230615497256059,0.301445281105245,1.17588707135705,0.502666365318702,0.494389935468748,1.15679485535929,1.76922110389975,0.161766849947409,1.32504911076236,0.484875253135222,0,0.292780797011547,0.41889341362691,0,0.239630249011841,0,0.254140454146129,0.748953197024114,2.28750301409313,0.251308704225729,0.347648640384553,0.511430914660661,0.41557608911912,0.973447578406546,0.712875546952214,1.7416975885413,1.76905930903572,0.210441855886474,0.390361328888111,0,0.180062129805349,0.452114453507145,0.408218994907967,0,0,0,0,0.189106080167819,0,0.219195732427575,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0.257347907114715,0.284163499395593,0,0.234526059981096,0,0,0,0,0.465067889500816,0,0.700592054203017,0.329119699826961,0.32833492815819,0.56748166682099,0.877199924551994,0.219550115291051,0.671032093801859,0.630869845692382,0.205809224758569,0,0.264450566663544,0.426576501070468,0.696710015581316,0.257734922644187,0.403367049246685,0.667134131534611,0.570676878337677,0,0.494096864172033,0,0.596869416123452,0.779856348476481,0,0,0.597423819763102,0.189667900953082,0.342745537829186,0,0.407302655690628,0.581857461502877,1.1221731182451,0.69560190836683,0.590440591918409,0.627994911365499,0.863780147452604,0.889357881261447,0.500535317148282,0,0.449724224769707,0,0.241177159752417,0.50925170356284,0.287696137450811,1.45921704097532,1.09824565275233,0,0.744281895337007,0.624075346229121,0.505157755894224,0.179397413521912,0.964887042726734,3.32555742299888,0.37898282354097,0,0.169745085775188,1.17345124144251,0.670025029767263,1.90434912708811,2.92700471786698,2.04925687338048,1.55025282754142,1.2756381492599,3.27726629431476,1.89953480052485,3.32692834737477,0,0.54390568381871,2.45882136509518,2.75936746304733,0.481651769963376,0.820481806145422,0.163934945376675,0.504941854408746,0,0,0.430846795465598,1.19484398976276,0.222798674082394,0,0.404810701674894,0,0,0,1.27746076687442,0.534196811001766,1.14020871547503,1.48473110675282,2.65490276679926,0.242780636154981,0.302323556964751,0.943025398779491,0.885905678642318,0.307435147943927,1.29214146584111,0.727067458955011,0.712994756769443,0.632073515871632,0,2.06271086496374,2.7235168460303,0.18006109403131,0.258717367565509,0,0,0.178368817602071,0.822745103010605,2.43571959291679,0,0.42366414172764,0.661585194164886,0,0.484393280087717,0.0603129249281559,0,0.164140899745061,0.291480836629851,0.556275906031529,0.683483523191411,0,0.370389054739423,0.376736914009382,1.0935538217682,1.14389086603261,1.01987057996313,1.39951452323658,1.38199973804424,0,0.632671987162271,0,0.324016022465404,0.836353184057875,0.655087691238533,0.269728692769641,0.661227645802687,0.523511883968059,0.518459893167171,1.86401793926078,0,0.747582730219894,0.165458490457098,0.777804753376191,1.03327858782185,0.675824501963113,0.821500670520278,1.0416350787516,1.04859344425711,0,0.288030006257865,2.21207784439725,0.405450430580328,0.205421914329655,0.389762468933385,1.9692936523423,3.17890167650024,1.68273629327956,2.21534290761866,1.81739609906666,2.362411006305,1.51239277705261,2.24153125701431,2.69393156592922,3.74006086981021,0.680191150845634,0.221985953374065,0,0,1.54551675225752,0.187682475451182,1.09890974560359,0.643105137237198,1.50471631210609,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0.341467211508268,0,0,0,0.888986911206461,0.206035057238894,0.64183841918363,1.01078884705519,0.50695859978048,0.188626341386076,0.37456602987953,0.704276676453562,0.516919220600519,0.952587382566147,0.695305955669133,0.192909220463705,0,0.294397840268795,0,0.354951612318675,0.238436189947321,0.436039249896986,0.470546902076653,0.592302255241736,0.365855945745545,1.31534855718921,0.543216455383447,0,0.711810108745045,0.394017929502254,0.409231043169689,0,0.192906610981141,0.499621155875892,1.16965804222704,1.50409737833809,0.57386499620653,0.220591419119515,0.231867835620421 | |||
|short_description=p11@Ccnd3 | |||
}} |
Revision as of 14:43, 13 September 2013
Short description: | p11@Ccnd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_Ccnd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2215 |
Association with transcript: | 123bp_to_ENSMUST00000171031, NM_001081635, NM_001081636, uc008cvk.1, uc008cvl.1, uc008cvm.1_5end |
EntrezGene: | Ccnd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 3.34e-13 | 42 |
respiratory tract | 1.91e-12 | 41 |
gland of gut | 1.14e-09 | 24 |
thymus | 6.68e-09 | 23 |
neck | 6.68e-09 | 23 |
respiratory system epithelium | 6.68e-09 | 23 |
hemolymphoid system gland | 6.68e-09 | 23 |
pharyngeal epithelium | 6.68e-09 | 23 |
thymic region | 6.68e-09 | 23 |
pharyngeal gland | 6.68e-09 | 23 |
entire pharyngeal arch endoderm | 6.68e-09 | 23 |
thymus primordium | 6.68e-09 | 23 |
early pharyngeal endoderm | 6.68e-09 | 23 |
pharynx | 2.39e-08 | 24 |
upper respiratory tract | 2.39e-08 | 24 |
chordate pharynx | 2.39e-08 | 24 |
pharyngeal arch system | 2.39e-08 | 24 |
pharyngeal region of foregut | 2.39e-08 | 24 |
epithelial bud | 5.17e-08 | 17 |
hemopoietic organ | 6.99e-08 | 29 |
immune organ | 6.99e-08 | 29 |
segment of respiratory tract | 6.01e-07 | 27 |
lung | 7.17e-07 | 14 |
respiratory tube | 7.17e-07 | 14 |
respiration organ | 7.17e-07 | 14 |
pair of lungs | 7.17e-07 | 14 |
lung primordium | 7.17e-07 | 14 |
lung bud | 7.17e-07 | 14 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.