FFCP PHASE1:Hg19::chr5:115872558..115872562,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57556|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10738|TSSclassifier=N|UniProt=|association_with_transcript=-404bp_to_ENST00000510263_5end|description=CAGE_peak_8_at_SEMA6A_5end|id=chr5:115872558..115872562,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000039;1.87e-07;7!CL:0000586;1.87e-07;7|ontology_enrichment_celltype_v019_2=CL:0000039,1.82e-07,7;CL:0000586,1.82e-07,7;CL:0000313,7.19e-07,1|ontology_enrichment_development_v019=UBERON:0009117;2.10e-13;10!UBERON:0005564;2.10e-13;10!UBERON:0000358;5.26e-07;1|ontology_enrichment_disease=DOID:3095!1.74e-08!22;DOID:2994!1.74e-08!22|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:2152,7.19e-07,1|ontology_enrichment_uberon=UBERON:0001049!3.02e-36!57;UBERON:0005068!3.02e-36!57;UBERON:0006241!3.02e-36!57;UBERON:0007135!3.02e-36!57;UBERON:0002780!2.52e-31!41;UBERON:0001890!2.52e-31!41;UBERON:0006240!2.52e-31!41;UBERON:0007023!8.13e-31!115;UBERON:0001017!1.06e-30!82;UBERON:0003080!2.88e-30!42;UBERON:0000073!5.35e-30!94;UBERON:0001016!5.35e-30!94;UBERON:0005743!1.45e-29!86;UBERON:0002616!1.83e-29!59;UBERON:0002020!5.38e-29!34;UBERON:0003528!5.38e-29!34;UBERON:0001893!1.67e-28!34;UBERON:0002791!5.48e-28!33;UBERON:0002346!3.48e-27!90;UBERON:0001869!2.06e-26!32;UBERON:0000955!3.40e-26!69;UBERON:0006238!3.40e-26!69;UBERON:0003075!7.86e-26!86;UBERON:0007284!7.86e-26!86;UBERON:0003056!1.82e-21!61;UBERON:0000956!1.01e-20!25;UBERON:0000203!1.01e-20!25;UBERON:0001950!5.63e-18!20;UBERON:0002619!6.79e-18!22;UBERON:0000924!1.23e-15!173;UBERON:0006601!1.23e-15!173;UBERON:0004121!1.45e-14!169;UBERON:0000153!1.14e-12!129;UBERON:0007811!1.14e-12!129;UBERON:0000033!5.14e-12!123;UBERON:0002308!9.82e-10!9;UBERON:0000125!9.82e-10!9;UBERON:0000025!1.73e-08!194;UBERON:0009663!7.25e-08!7;UBERON:0002420!1.83e-07!9;UBERON:0007245!1.83e-07!9;UBERON:0010009!1.83e-07!9;UBERON:0010011!1.83e-07!9;UBERON:0000454!1.83e-07!9;UBERON:0003076!2.14e-07!15;UBERON:0003057!2.14e-07!15|ontology_enrichment_uberon_v019=UBERON:0000922;2.11e-20;49!UBERON:0000160;4.42e-10;17!UBERON:0002108;5.20e-10;4!UBERON:0002021;5.20e-10;5!UBERON:0002114;6.24e-08;2!UBERON:0005409;9.21e-08;22!UBERON:0002780;4.18e-07;41!UBERON:0001890;4.18e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0002021,4.20e-10,5;UBERON:0000160,4.79e-10,17;UBERON:0002108,9.13e-10,4;UBERON:0002780,1.03e-08,41;UBERON:0001890,1.03e-08,41;UBERON:0003080,1.03e-08,41;UBERON:0006240,1.03e-08,41;UBERON:0001016,2.66e-08,89;UBERON:0001017,4.40e-08,81;UBERON:0002114,1.09e-07,2;UBERON:0001049,1.51e-07,56;UBERON:0005068,1.51e-07,56;UBERON:0006241,1.51e-07,56;UBERON:0007135,1.51e-07,56;UBERON:0011216,2.48e-07,223;UBERON:0002791,4.66e-07,32;UBERON:0004911,7.19e-07,1;UBERON:0005409,8.92e-07,25;UBERON:0002426,8.97e-07,1;UBERON:0003831,8.97e-07,1;UBERON:0003898,8.97e-07,1;UBERON:0004830,8.97e-07,1;UBERON:0003830,8.97e-07,1;UBERON:0005175,8.97e-07,1;UBERON:0001774,8.97e-07,1;UBERON:0001103,8.97e-07,1;UBERON:0010084,8.97e-07,1;UBERON:0003056,9.73e-07,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85870796139317,0.684372125364421,0.502170558379211,0.687720651731561,0.492603536699674,0.865818594450472,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0.44905874525234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21973706129595,0.397589304964456,0,0.725627385107593,1.7662459561294,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,0,0.491953754172454,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0.144119953416961,0,0.444485260045183,0,0,0,0,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0.165018999841176,0,0,0,0.096670718292122,0,0.307007349452259,0.137836572484531,0,0.145016693914229,0.170453254832202,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.398495976502139,1.38141957765574,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0,0.689486746482929,0.291604613383254,0,0.8857413858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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57556 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10738 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-404bp_to_ENST00000510263_5end | |||
|description=CAGE_peak_8_at_SEMA6A_5end | |||
|id=chr5:115872558..115872562,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.87e-07;7!CL:0000586;1.87e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.82e-07,7;CL:0000586,1.82e-07,7;CL:0000313,7.19e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.10e-13;10!UBERON:0005564;2.10e-13;10!UBERON:0000358;5.26e-07;1 | |||
|ontology_enrichment_disease=DOID:3095!1.74e-08!22;DOID:2994!1.74e-08!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2152,7.19e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.02e-36!57;UBERON:0005068!3.02e-36!57;UBERON:0006241!3.02e-36!57;UBERON:0007135!3.02e-36!57;UBERON:0002780!2.52e-31!41;UBERON:0001890!2.52e-31!41;UBERON:0006240!2.52e-31!41;UBERON:0007023!8.13e-31!115;UBERON:0001017!1.06e-30!82;UBERON:0003080!2.88e-30!42;UBERON:0000073!5.35e-30!94;UBERON:0001016!5.35e-30!94;UBERON:0005743!1.45e-29!86;UBERON:0002616!1.83e-29!59;UBERON:0002020!5.38e-29!34;UBERON:0003528!5.38e-29!34;UBERON:0001893!1.67e-28!34;UBERON:0002791!5.48e-28!33;UBERON:0002346!3.48e-27!90;UBERON:0001869!2.06e-26!32;UBERON:0000955!3.40e-26!69;UBERON:0006238!3.40e-26!69;UBERON:0003075!7.86e-26!86;UBERON:0007284!7.86e-26!86;UBERON:0003056!1.82e-21!61;UBERON:0000956!1.01e-20!25;UBERON:0000203!1.01e-20!25;UBERON:0001950!5.63e-18!20;UBERON:0002619!6.79e-18!22;UBERON:0000924!1.23e-15!173;UBERON:0006601!1.23e-15!173;UBERON:0004121!1.45e-14!169;UBERON:0000153!1.14e-12!129;UBERON:0007811!1.14e-12!129;UBERON:0000033!5.14e-12!123;UBERON:0002308!9.82e-10!9;UBERON:0000125!9.82e-10!9;UBERON:0000025!1.73e-08!194;UBERON:0009663!7.25e-08!7;UBERON:0002420!1.83e-07!9;UBERON:0007245!1.83e-07!9;UBERON:0010009!1.83e-07!9;UBERON:0010011!1.83e-07!9;UBERON:0000454!1.83e-07!9;UBERON:0003076!2.14e-07!15;UBERON:0003057!2.14e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.11e-20;49!UBERON:0000160;4.42e-10;17!UBERON:0002108;5.20e-10;4!UBERON:0002021;5.20e-10;5!UBERON:0002114;6.24e-08;2!UBERON:0005409;9.21e-08;22!UBERON:0002780;4.18e-07;41!UBERON:0001890;4.18e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,4.20e-10,5;UBERON:0000160,4.79e-10,17;UBERON:0002108,9.13e-10,4;UBERON:0002780,1.03e-08,41;UBERON:0001890,1.03e-08,41;UBERON:0003080,1.03e-08,41;UBERON:0006240,1.03e-08,41;UBERON:0001016,2.66e-08,89;UBERON:0001017,4.40e-08,81;UBERON:0002114,1.09e-07,2;UBERON:0001049,1.51e-07,56;UBERON:0005068,1.51e-07,56;UBERON:0006241,1.51e-07,56;UBERON:0007135,1.51e-07,56;UBERON:0011216,2.48e-07,223;UBERON:0002791,4.66e-07,32;UBERON:0004911,7.19e-07,1;UBERON:0005409,8.92e-07,25;UBERON:0002426,8.97e-07,1;UBERON:0003831,8.97e-07,1;UBERON:0003898,8.97e-07,1;UBERON:0004830,8.97e-07,1;UBERON:0003830,8.97e-07,1;UBERON:0005175,8.97e-07,1;UBERON:0001774,8.97e-07,1;UBERON:0001103,8.97e-07,1;UBERON:0010084,8.97e-07,1;UBERON:0003056,9.73e-07,61 | |||
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|short_description=p8@SEMA6A | |||
}} |
Revision as of 12:46, 13 September 2013
Short description: | p8@SEMA6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_SEMA6A_5end |
Coexpression cluster: | NA |
Association with transcript: | -404bp_to_ENST00000510263_5end |
EntrezGene: | SEMA6A |
HGNC: | 10738 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.82e-07 | 7 |
germ cell | 1.82e-07 | 7 |
serous secreting cell | 7.19e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 4.20e-10 | 5 |
intestine | 4.79e-10 | 17 |
small intestine | 9.13e-10 | 4 |
regional part of forebrain | 1.03e-08 | 41 |
forebrain | 1.03e-08 | 41 |
anterior neural tube | 1.03e-08 | 41 |
future forebrain | 1.03e-08 | 41 |
nervous system | 2.66e-08 | 89 |
central nervous system | 4.40e-08 | 81 |
duodenum | 1.09e-07 | 2 |
neural tube | 1.51e-07 | 56 |
neural rod | 1.51e-07 | 56 |
future spinal cord | 1.51e-07 | 56 |
neural keel | 1.51e-07 | 56 |
organ system subdivision | 2.48e-07 | 223 |
regional part of telencephalon | 4.66e-07 | 32 |
epithelium of female gonad | 7.19e-07 | 1 |
gastrointestinal system | 8.92e-07 | 25 |
chest muscle | 8.97e-07 | 1 |
respiratory system muscle | 8.97e-07 | 1 |
skeletal muscle of trunk | 8.97e-07 | 1 |
respiratory system skeletal muscle | 8.97e-07 | 1 |
thoracic segment muscle | 8.97e-07 | 1 |
chest organ | 8.97e-07 | 1 |
muscle of trunk | 8.97e-07 | 1 |
diaphragm | 8.97e-07 | 1 |
future diaphragm | 8.97e-07 | 1 |
pre-chordal neural plate | 9.73e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 7.19e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.