FFCP PHASE1:Mm9::chr14:75347602..75347611,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=380916|HGNC=|MCL_coexpression_id=925|UniProt=P62046,Q3UP01|association_with_transcript=72bp_to_ENSMUST00000088970,NM_001033439,NM_001252132,uc007uqf.1,uc007uqg.1_5end|description=CAGE_peak_3_at_Lrch1_5end|id=chr14:75347602..75347611,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0006562!2.17e-09!24;UBERON:0001557!2.17e-09!24;UBERON:0001042!2.17e-09!24;UBERON:0008814!2.17e-09!24;UBERON:0009145!2.17e-09!24;UBERON:0003408!5.37e-09!24;UBERON:0002370!8.67e-09!23;UBERON:0000974!8.67e-09!23;UBERON:0004807!8.67e-09!23;UBERON:0005058!8.67e-09!23;UBERON:0003351!8.67e-09!23;UBERON:0009113!8.67e-09!23;UBERON:0003295!8.67e-09!23;UBERON:0009722!8.67e-09!23;UBERON:0005562!8.67e-09!23;UBERON:0007690!8.67e-09!23;UBERON:0004177!9.17e-09!29;UBERON:0000072!2.79e-07!27;UBERON:0001004!2.96e-07!42;UBERON:0000065!4.90e-07!41;UBERON:0000063!8.49e-07!35|ontology_enrichment_uberon_v019_2=UBERON:0006562,1.40e-10,24;UBERON:0001557,1.40e-10,24;UBERON:0001042,1.40e-10,24;UBERON:0008814,1.40e-10,24;UBERON:0009145,1.40e-10,24;UBERON:0003408,4.47e-10,24;UBERON:0002370,9.04e-10,23;UBERON:0000974,9.04e-10,23;UBERON:0004807,9.04e-10,23;UBERON:0005058,9.04e-10,23;UBERON:0003351,9.04e-10,23;UBERON:0009113,9.04e-10,23;UBERON:0003295,9.04e-10,23;UBERON:0009722,9.04e-10,23;UBERON:0005562,9.04e-10,23;UBERON:0007690,9.04e-10,23;UBERON:0000077,1.43e-09,35;UBERON:0004177,6.28e-09,29;UBERON:0005057,6.28e-09,29;UBERON:0000072,1.29e-08,27;UBERON:0001004,1.01e-07,42;UBERON:0000065,1.97e-07,41;UBERON:0002193,3.55e-07,48;UBERON:0002405,3.55e-07,48|phase1_expression=0.480446541314382,0.348975407639361,0,0,0,1.51091344720701,2.56973904655078,1.42035655785734,11.6854639385883,15.6823232635736,3.4243593645101,2.87179772383211,1.54080656938085,0.874204024189974,1.33243904726265,1.01237633694913,0,1.73504190947031,2.74228867211478,2.12194825899015,0.510259740906419,0.397163804803541,0,0.799962113967033,1.60586496747019,0,0.86152399231815,0.646413698057667,0,0.252030129759931,0.221730510655305,0.635030673459631,0,0,1.44425809875637,0.831173226792462,0.816677425049476,0.418531630736908,0,0,0.588231488031014,0,0.485510353031154,0.629484089877886,0.811015449756117,1.10128051297009,0,0.872100625521786,0,1.36100929351998,0.55994568650145,1.43752564364972,2.34895648480831,2.17608642603403,1.34437519656986,0.257259436035947,0,0.515672092277442,0.606949382578793,0.528990979272033,0,0.338844532069132,0,0.449949858640699,0,0,0.299600110518405,0.768436610643109,0.207379224616955,0.135005938331691,0,0.571301968807607,0.220868540951614,0.122490799214954,0.287536413054709,0.919218786610021,1.10115880999389,3.31987079021488,1.68967186581868,0.263772575460388,0.0914876436024097,0.52091337055676,0.558365998002762,0.56276261003168,0.61119299110724,1.17851434189467,0.711858403995515,0.186399445825301,0.075726193333184,0.151143120213571,5.79728977403356,1.72084775396277,0,0,0.649776417447669,0.448026887097336,0.561777680527007,1.53387290320252,0.259786004602869,1.7666978725517,0,2.56652954828636,7.64415719119937,28.4426681261332,0,0.760079596425296,0,1.1418387971906,4.91981978929626,0.890652834388949,0.346970653532272,0,0.230615497256059,0.150722640552623,0.823120949949934,0.251333182659351,0,0.86759614151947,0,0.647067399789637,0.662524555381181,0.484875253135222,0,1.46390398505774,0.628340120440365,1.27728527604296,0.359445373517761,0,0.254140454146129,0.748953197024114,0.457500602818626,0.879580464790051,0.347648640384553,0.255715457330331,1.45451631191692,2.10913641988085,0.407357455401265,0.497627882440372,0.252722758433675,0.420883711772948,0.260240885925407,0.229902104433473,0.720248519221397,0.452114453507145,0.544291993210623,0.2562274405697,0.187403449119458,0.517406741478031,0.215567992932842,0.378212160335639,0.879755620819744,0.43839146485515,1.11218899690239,1.39300866608867,1.85203922767149,0.199034266818493,0,0,0,0.621377317606506,0.703578179943289,0.180062061461015,0.23674473558521,0.590292695242212,0.462801338662135,0.232533944750408,0.804820204198858,0.700592054203017,0.987359099480883,1.31333971263276,1.54030738137126,0.730999937126662,0.439100230582101,1.20785776884335,0.210289948564127,0.205809224758569,0.660837565967596,0,0.426576501070468,0.464473343720877,0.77320476793256,0,0.667134131534611,0.190225626112559,0.474529061544512,0,0.502670417600539,0,0.19496408711912,0.898819408654221,0,0.398282546508734,0.379335801906163,0.799739588268102,2.25415471346161,0.814605311381257,1.55161989734101,1.33258057791605,1.51767689098217,0.738050739898011,1.09899109488962,0.246794327843601,0.592905254174298,0.500535317148282,0.196558995113203,0.224862112384854,0.405720242777006,0.241177159752417,0.763877555344259,0.575392274901621,0.972811360650212,0.549122826376163,0,1.86070473834252,1.24815069245824,1.01031551178845,0.179397413521912,0.964887042726734,1.84753190166605,0.757965647081939,0.488894929326078,0.678980343100753,1.17345124144251,0,0.952174563544055,0.390267295715598,0.315270288212382,1.32878813789265,1.43509291791738,1.47476983244164,1.89953480052485,0.867894351489069,0,0,0.491764273019036,0.551873492609465,1.9266070798535,1.40654023910644,0.491804836130026,0.252470927204373,0.315508219416257,0,0.861693590931196,0.716906393857656,1.55959071857676,0.566153061577665,0,0.584511715822624,0.395287777946524,0.642642632843614,1.13552068166615,0,0.488660878060728,0,1.32745138339963,0.971122544619926,0.604647113929502,0.377210159511796,0.590603785761546,1.84461088766356,0,1.09060118843252,0.356497378384721,0.948110273807448,1.05418608574999,2.06271086496374,0,0,0,0.214337035031592,0.177340233642274,0.713475270408282,0.329098041204242,0.608929898229199,0.23467170806371,1.69465656691056,0.661585194164886,3.13283880588812,3.55221738730992,1.62844897306021,1.19372344003136,1.47726809770555,0.291480836629851,0.556275906031529,1.02522528478712,1.65109494370578,0.740778109478847,0.376736914009382,0.956859594047176,1.37266903923914,0.509935289981566,0.559805809294632,0.552799895217695,0.954670618015114,0,0.609958401380546,0.756037385752609,1.25452977608681,0.87345025498471,1.07891477107857,1.07449492442937,1.04702376793612,0.388844919875379,1.24267862617385,0,0.747582730219894,0.496375471371293,0.388902376688095,0.516639293910924,1.01373675294467,0.938857909166032,0.39061315453185,0.629156066554265,0.483168241652012,0,2.8441000856536,0.608175645870493,1.23253148597793,1.03936658382236,1.07416017400489,1.98681354781265,0.600977247599844,0.886137163047463,1.11063094942962,1.5241361331,1.91569751759997,2.14407337627455,1.53938946624527,1.5193997283604,2.94749498699775,0.887943813496259,0.358855426437903,0.167884616364078,1.15913756419314,1.31377732815827,0.73260649706906,1.07184189539533,0.501572104035363,1.12950368523413,0.920650473014354,0.572895513439397,0.515559547031063,2.05524755931193,1.5107877947794,0.675022500231806,0.900642406448441,0.453142408984205,0.51776031175182,0.31136204275253,0.798049746802062,0.682934423016537,0.972426868273176,0.209613162627982,0.735374033800057,2.22246727801615,1.23621034343337,1.92551525755089,2.77966932940177,1.01391719956096,0.377252682772152,1.40462261204824,1.72867911493147,1.09127391015665,0.952587382566147,1.0429589335037,0.578727661391115,1.23625770240992,1.17759136107518,1.71434626192708,1.77475806159337,1.43061713968393,1.30811774969096,1.78807822789128,1.4384483341585,0.914639864363863,1.8414879800649,2.03706170768793,2.24456908663095,1.18635018124174,1.0835493061312,1.63692417267876,1.23949472948773,1.92906610981141,0.999242311751784,2.10538447600868,1.71896843238639,0.57386499620653,0.882365676478062,0.463735671240843|short_description=p3@Lrch1}} | ||
|EntrezGene=380916 | |||
|HGNC= | |||
|MCL_coexpression_id=925 | |||
|UniProt=P62046,Q3UP01 | |||
|association_with_transcript=72bp_to_ENSMUST00000088970,NM_001033439,NM_001252132,uc007uqf.1,uc007uqg.1_5end | |||
|description=CAGE_peak_3_at_Lrch1_5end | |||
|id=chr14:75347602..75347611,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006562!2.17e-09!24;UBERON:0001557!2.17e-09!24;UBERON:0001042!2.17e-09!24;UBERON:0008814!2.17e-09!24;UBERON:0009145!2.17e-09!24;UBERON:0003408!5.37e-09!24;UBERON:0002370!8.67e-09!23;UBERON:0000974!8.67e-09!23;UBERON:0004807!8.67e-09!23;UBERON:0005058!8.67e-09!23;UBERON:0003351!8.67e-09!23;UBERON:0009113!8.67e-09!23;UBERON:0003295!8.67e-09!23;UBERON:0009722!8.67e-09!23;UBERON:0005562!8.67e-09!23;UBERON:0007690!8.67e-09!23;UBERON:0004177!9.17e-09!29;UBERON:0000072!2.79e-07!27;UBERON:0001004!2.96e-07!42;UBERON:0000065!4.90e-07!41;UBERON:0000063!8.49e-07!35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006562,1.40e-10,24;UBERON:0001557,1.40e-10,24;UBERON:0001042,1.40e-10,24;UBERON:0008814,1.40e-10,24;UBERON:0009145,1.40e-10,24;UBERON:0003408,4.47e-10,24;UBERON:0002370,9.04e-10,23;UBERON:0000974,9.04e-10,23;UBERON:0004807,9.04e-10,23;UBERON:0005058,9.04e-10,23;UBERON:0003351,9.04e-10,23;UBERON:0009113,9.04e-10,23;UBERON:0003295,9.04e-10,23;UBERON:0009722,9.04e-10,23;UBERON:0005562,9.04e-10,23;UBERON:0007690,9.04e-10,23;UBERON:0000077,1.43e-09,35;UBERON:0004177,6.28e-09,29;UBERON:0005057,6.28e-09,29;UBERON:0000072,1.29e-08,27;UBERON:0001004,1.01e-07,42;UBERON:0000065,1.97e-07,41;UBERON:0002193,3.55e-07,48;UBERON:0002405,3.55e-07,48 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0,0,0,1.51091344720701,2.56973904655078,1.42035655785734,11.6854639385883,15.6823232635736,3.4243593645101,2.87179772383211,1.54080656938085,0.874204024189974,1.33243904726265,1.01237633694913,0,1.73504190947031,2.74228867211478,2.12194825899015,0.510259740906419,0.397163804803541,0,0.799962113967033,1.60586496747019,0,0.86152399231815,0.646413698057667,0,0.252030129759931,0.221730510655305,0.635030673459631,0,0,1.44425809875637,0.831173226792462,0.816677425049476,0.418531630736908,0,0,0.588231488031014,0,0.485510353031154,0.629484089877886,0.811015449756117,1.10128051297009,0,0.872100625521786,0,1.36100929351998,0.55994568650145,1.43752564364972,2.34895648480831,2.17608642603403,1.34437519656986,0.257259436035947,0,0.515672092277442,0.606949382578793,0.528990979272033,0,0.338844532069132,0,0.449949858640699,0,0,0.299600110518405,0.768436610643109,0.207379224616955,0.135005938331691,0,0.571301968807607,0.220868540951614,0.122490799214954,0.287536413054709,0.919218786610021,1.10115880999389,3.31987079021488,1.68967186581868,0.263772575460388,0.0914876436024097,0.52091337055676,0.558365998002762,0.56276261003168,0.61119299110724,1.17851434189467,0.711858403995515,0.186399445825301,0.075726193333184,0.151143120213571,5.79728977403356,1.72084775396277,0,0,0.649776417447669,0.448026887097336,0.561777680527007,1.53387290320252,0.259786004602869,1.7666978725517,0,2.56652954828636,7.64415719119937,28.4426681261332,0,0.760079596425296,0,1.1418387971906,4.91981978929626,0.890652834388949,0.346970653532272,0,0.230615497256059,0.150722640552623,0.823120949949934,0.251333182659351,0,0.86759614151947,0,0.647067399789637,0.662524555381181,0.484875253135222,0,1.46390398505774,0.628340120440365,1.27728527604296,0.359445373517761,0,0.254140454146129,0.748953197024114,0.457500602818626,0.879580464790051,0.347648640384553,0.255715457330331,1.45451631191692,2.10913641988085,0.407357455401265,0.497627882440372,0.252722758433675,0.420883711772948,0.260240885925407,0.229902104433473,0.720248519221397,0.452114453507145,0.544291993210623,0.2562274405697,0.187403449119458,0.517406741478031,0.215567992932842,0.378212160335639,0.879755620819744,0.43839146485515,1.11218899690239,1.39300866608867,1.85203922767149,0.199034266818493,0,0,0,0.621377317606506,0.703578179943289,0.180062061461015,0.23674473558521,0.590292695242212,0.462801338662135,0.232533944750408,0.804820204198858,0.700592054203017,0.987359099480883,1.31333971263276,1.54030738137126,0.730999937126662,0.439100230582101,1.20785776884335,0.210289948564127,0.205809224758569,0.660837565967596,0,0.426576501070468,0.464473343720877,0.77320476793256,0,0.667134131534611,0.190225626112559,0.474529061544512,0,0.502670417600539,0,0.19496408711912,0.898819408654221,0,0.398282546508734,0.379335801906163,0.799739588268102,2.25415471346161,0.814605311381257,1.55161989734101,1.33258057791605,1.51767689098217,0.738050739898011,1.09899109488962,0.246794327843601,0.592905254174298,0.500535317148282,0.196558995113203,0.224862112384854,0.405720242777006,0.241177159752417,0.763877555344259,0.575392274901621,0.972811360650212,0.549122826376163,0,1.86070473834252,1.24815069245824,1.01031551178845,0.179397413521912,0.964887042726734,1.84753190166605,0.757965647081939,0.488894929326078,0.678980343100753,1.17345124144251,0,0.952174563544055,0.390267295715598,0.315270288212382,1.32878813789265,1.43509291791738,1.47476983244164,1.89953480052485,0.867894351489069,0,0,0.491764273019036,0.551873492609465,1.9266070798535,1.40654023910644,0.491804836130026,0.252470927204373,0.315508219416257,0,0.861693590931196,0.716906393857656,1.55959071857676,0.566153061577665,0,0.584511715822624,0.395287777946524,0.642642632843614,1.13552068166615,0,0.488660878060728,0,1.32745138339963,0.971122544619926,0.604647113929502,0.377210159511796,0.590603785761546,1.84461088766356,0,1.09060118843252,0.356497378384721,0.948110273807448,1.05418608574999,2.06271086496374,0,0,0,0.214337035031592,0.177340233642274,0.713475270408282,0.329098041204242,0.608929898229199,0.23467170806371,1.69465656691056,0.661585194164886,3.13283880588812,3.55221738730992,1.62844897306021,1.19372344003136,1.47726809770555,0.291480836629851,0.556275906031529,1.02522528478712,1.65109494370578,0.740778109478847,0.376736914009382,0.956859594047176,1.37266903923914,0.509935289981566,0.559805809294632,0.552799895217695,0.954670618015114,0,0.609958401380546,0.756037385752609,1.25452977608681,0.87345025498471,1.07891477107857,1.07449492442937,1.04702376793612,0.388844919875379,1.24267862617385,0,0.747582730219894,0.496375471371293,0.388902376688095,0.516639293910924,1.01373675294467,0.938857909166032,0.39061315453185,0.629156066554265,0.483168241652012,0,2.8441000856536,0.608175645870493,1.23253148597793,1.03936658382236,1.07416017400489,1.98681354781265,0.600977247599844,0.886137163047463,1.11063094942962,1.5241361331,1.91569751759997,2.14407337627455,1.53938946624527,1.5193997283604,2.94749498699775,0.887943813496259,0.358855426437903,0.167884616364078,1.15913756419314,1.31377732815827,0.73260649706906,1.07184189539533,0.501572104035363,1.12950368523413,0.920650473014354,0.572895513439397,0.515559547031063,2.05524755931193,1.5107877947794,0.675022500231806,0.900642406448441,0.453142408984205,0.51776031175182,0.31136204275253,0.798049746802062,0.682934423016537,0.972426868273176,0.209613162627982,0.735374033800057,2.22246727801615,1.23621034343337,1.92551525755089,2.77966932940177,1.01391719956096,0.377252682772152,1.40462261204824,1.72867911493147,1.09127391015665,0.952587382566147,1.0429589335037,0.578727661391115,1.23625770240992,1.17759136107518,1.71434626192708,1.77475806159337,1.43061713968393,1.30811774969096,1.78807822789128,1.4384483341585,0.914639864363863,1.8414879800649,2.03706170768793,2.24456908663095,1.18635018124174,1.0835493061312,1.63692417267876,1.23949472948773,1.92906610981141,0.999242311751784,2.10538447600868,1.71896843238639,0.57386499620653,0.882365676478062,0.463735671240843 | |||
|short_description=p3@Lrch1 | |||
}} |
Revision as of 03:05, 13 September 2013
Short description: | p3@Lrch1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lrch1_5end |
Coexpression cluster: | MCL_coexpression_mm9:925 |
Association with transcript: | 72bp_to_ENSMUST00000088970, NM_001033439, NM_001252132, uc007uqf.1, uc007uqg.1_5end |
EntrezGene: | Lrch1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pharynx | 1.40e-10 | 24 |
upper respiratory tract | 1.40e-10 | 24 |
chordate pharynx | 1.40e-10 | 24 |
pharyngeal arch system | 1.40e-10 | 24 |
pharyngeal region of foregut | 1.40e-10 | 24 |
gland of gut | 4.47e-10 | 24 |
thymus | 9.04e-10 | 23 |
neck | 9.04e-10 | 23 |
respiratory system epithelium | 9.04e-10 | 23 |
hemolymphoid system gland | 9.04e-10 | 23 |
pharyngeal epithelium | 9.04e-10 | 23 |
thymic region | 9.04e-10 | 23 |
pharyngeal gland | 9.04e-10 | 23 |
entire pharyngeal arch endoderm | 9.04e-10 | 23 |
thymus primordium | 9.04e-10 | 23 |
early pharyngeal endoderm | 9.04e-10 | 23 |
mixed endoderm/mesoderm-derived structure | 1.43e-09 | 35 |
hemopoietic organ | 6.28e-09 | 29 |
immune organ | 6.28e-09 | 29 |
segment of respiratory tract | 1.29e-08 | 27 |
respiratory system | 1.01e-07 | 42 |
respiratory tract | 1.97e-07 | 41 |
hemolymphoid system | 3.55e-07 | 48 |
immune system | 3.55e-07 | 48 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.