FFCP PHASE1:Hg19::chr4:144275173..144275206,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C629|description=CAGE_peak_at_chr4:144275173..144275206,+|id=chr4:144275173..144275206,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002537;2.38e-11;5|ontology_enrichment_celltype_v019_2=CL:0002537,1.96e-11,5|ontology_enrichment_development_v019=UBERON:0009143;1.64e-07;1!UBERON:0001045;3.71e-07;1!UBERON:0010115;7.08e-07;1!UBERON:0004140;7.08e-07;1!UBERON:0004874;7.08e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.05e-43!115;UBERON:0002346!1.12e-14!90;UBERON:0000924!1.30e-14!173;UBERON:0006601!1.30e-14!173;UBERON:0001049!2.15e-14!57;UBERON:0005068!2.15e-14!57;UBERON:0006241!2.15e-14!57;UBERON:0007135!2.15e-14!57;UBERON:0004121!1.07e-13!169;UBERON:0003075!1.13e-13!86;UBERON:0007284!1.13e-13!86;UBERON:0001017!1.30e-13!82;UBERON:0005743!1.95e-13!86;UBERON:0003080!5.26e-13!42;UBERON:0002619!1.58e-12!22;UBERON:0001950!2.61e-12!20;UBERON:0002780!4.69e-12!41;UBERON:0001890!4.69e-12!41;UBERON:0006240!4.69e-12!41;UBERON:0000153!5.00e-12!129;UBERON:0007811!5.00e-12!129;UBERON:0001893!2.40e-11!34;UBERON:0000073!3.03e-11!94;UBERON:0001016!3.03e-11!94;UBERON:0000955!4.51e-11!69;UBERON:0006238!4.51e-11!69;UBERON:0001869!5.57e-11!32;UBERON:0000033!6.69e-11!123;UBERON:0000956!1.36e-10!25;UBERON:0000203!1.36e-10!25;UBERON:0002791!1.37e-10!33;UBERON:0002616!3.19e-10!59;UBERON:0002020!3.82e-10!34;UBERON:0003528!3.82e-10!34;UBERON:0000200!1.09e-09!6;UBERON:0000064!3.32e-09!219;UBERON:0003056!1.06e-08!61;UBERON:0000062!9.02e-07!511|ontology_enrichment_uberon_v019=UBERON:0000160;3.63e-15;17!UBERON:0000059;2.59e-13;11!UBERON:0002771;2.28e-12;2!UBERON:0005409;1.13e-11;22!UBERON:0004921;1.41e-11;33!UBERON:0001155;1.10e-10;9!UBERON:0005631;1.10e-09;10!UBERON:0000158;1.10e-09;10!UBERON:0000200;4.97e-09;6!UBERON:0001723;7.19e-09;3!UBERON:0001033;7.19e-09;3!UBERON:0000305;3.11e-08;7!UBERON:0002372;2.59e-07;1!UBERON:0001961;2.59e-07;1!UBERON:0001744;2.59e-07;1!UBERON:0001042;2.59e-07;1!UBERON:0001735;2.59e-07;1!UBERON:0005795;2.92e-07;1!UBERON:0007029;3.71e-07;1!UBERON:0001154;3.71e-07;1!UBERON:0001153;3.71e-07;1!UBERON:0009854;3.71e-07;1!UBERON:0002363;7.08e-07;1!UBERON:0003112;7.08e-07;1!UBERON:0000989;7.08e-07;1!UBERON:0008811;7.08e-07;1!UBERON:0011158;7.08e-07;1!UBERON:0003128;7.08e-07;1!UBERON:0001703;7.08e-07;1!UBERON:0002241;7.08e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.76e-15,17;UBERON:0007023,5.63e-14,114;UBERON:0000059,2.98e-13,11;UBERON:0002771,2.57e-12,2;UBERON:0001155,1.28e-10,9;UBERON:0005409,3.26e-10,25;UBERON:0000200,5.97e-09,6;UBERON:0001723,8.41e-09,3;UBERON:0001033,8.41e-09,3;UBERON:0010056,8.41e-09,3;UBERON:0000305,2.72e-08,7;UBERON:0002372,2.52e-07,1;UBERON:0001961,2.52e-07,1;UBERON:0001744,2.52e-07,1;UBERON:0001735,2.52e-07,1;UBERON:0004871,2.63e-07,8;UBERON:0001154,3.40e-07,1;UBERON:0001153,3.40e-07,1;UBERON:0001045,3.40e-07,1;UBERON:0007029,3.82e-07,1;UBERON:0000989,4.57e-07,1;UBERON:0008811,4.57e-07,1;UBERON:0006258,4.57e-07,1;UBERON:0005876,4.57e-07,1;UBERON:0004874,4.57e-07,1;UBERON:0002363,4.85e-07,1;UBERON:0007645,4.85e-07,1;UBERON:0007647,4.85e-07,1;UBERON:0010115,4.85e-07,1;UBERON:0005631,5.63e-07,14;UBERON:0000158,5.63e-07,14;UBERON:0003112,8.67e-07,1;UBERON:0011158,8.67e-07,1;UBERON:0003128,8.67e-07,1;UBERON:0001703,8.67e-07,1;UBERON:0002241,8.67e-07,1;UBERON:0004761,8.67e-07,1;UBERON:0009617,8.67e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154934401160603,2.98555388223585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.818238361772504,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.309123034943167,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C629 | |||
|description=CAGE_peak_at_chr4:144275173..144275206,+ | |||
|id=chr4:144275173..144275206,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002537;2.38e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,1.96e-11,5 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.64e-07;1!UBERON:0001045;3.71e-07;1!UBERON:0010115;7.08e-07;1!UBERON:0004140;7.08e-07;1!UBERON:0004874;7.08e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.05e-43!115;UBERON:0002346!1.12e-14!90;UBERON:0000924!1.30e-14!173;UBERON:0006601!1.30e-14!173;UBERON:0001049!2.15e-14!57;UBERON:0005068!2.15e-14!57;UBERON:0006241!2.15e-14!57;UBERON:0007135!2.15e-14!57;UBERON:0004121!1.07e-13!169;UBERON:0003075!1.13e-13!86;UBERON:0007284!1.13e-13!86;UBERON:0001017!1.30e-13!82;UBERON:0005743!1.95e-13!86;UBERON:0003080!5.26e-13!42;UBERON:0002619!1.58e-12!22;UBERON:0001950!2.61e-12!20;UBERON:0002780!4.69e-12!41;UBERON:0001890!4.69e-12!41;UBERON:0006240!4.69e-12!41;UBERON:0000153!5.00e-12!129;UBERON:0007811!5.00e-12!129;UBERON:0001893!2.40e-11!34;UBERON:0000073!3.03e-11!94;UBERON:0001016!3.03e-11!94;UBERON:0000955!4.51e-11!69;UBERON:0006238!4.51e-11!69;UBERON:0001869!5.57e-11!32;UBERON:0000033!6.69e-11!123;UBERON:0000956!1.36e-10!25;UBERON:0000203!1.36e-10!25;UBERON:0002791!1.37e-10!33;UBERON:0002616!3.19e-10!59;UBERON:0002020!3.82e-10!34;UBERON:0003528!3.82e-10!34;UBERON:0000200!1.09e-09!6;UBERON:0000064!3.32e-09!219;UBERON:0003056!1.06e-08!61;UBERON:0000062!9.02e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.63e-15;17!UBERON:0000059;2.59e-13;11!UBERON:0002771;2.28e-12;2!UBERON:0005409;1.13e-11;22!UBERON:0004921;1.41e-11;33!UBERON:0001155;1.10e-10;9!UBERON:0005631;1.10e-09;10!UBERON:0000158;1.10e-09;10!UBERON:0000200;4.97e-09;6!UBERON:0001723;7.19e-09;3!UBERON:0001033;7.19e-09;3!UBERON:0000305;3.11e-08;7!UBERON:0002372;2.59e-07;1!UBERON:0001961;2.59e-07;1!UBERON:0001744;2.59e-07;1!UBERON:0001042;2.59e-07;1!UBERON:0001735;2.59e-07;1!UBERON:0005795;2.92e-07;1!UBERON:0007029;3.71e-07;1!UBERON:0001154;3.71e-07;1!UBERON:0001153;3.71e-07;1!UBERON:0009854;3.71e-07;1!UBERON:0002363;7.08e-07;1!UBERON:0003112;7.08e-07;1!UBERON:0000989;7.08e-07;1!UBERON:0008811;7.08e-07;1!UBERON:0011158;7.08e-07;1!UBERON:0003128;7.08e-07;1!UBERON:0001703;7.08e-07;1!UBERON:0002241;7.08e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.76e-15,17;UBERON:0007023,5.63e-14,114;UBERON:0000059,2.98e-13,11;UBERON:0002771,2.57e-12,2;UBERON:0001155,1.28e-10,9;UBERON:0005409,3.26e-10,25;UBERON:0000200,5.97e-09,6;UBERON:0001723,8.41e-09,3;UBERON:0001033,8.41e-09,3;UBERON:0010056,8.41e-09,3;UBERON:0000305,2.72e-08,7;UBERON:0002372,2.52e-07,1;UBERON:0001961,2.52e-07,1;UBERON:0001744,2.52e-07,1;UBERON:0001735,2.52e-07,1;UBERON:0004871,2.63e-07,8;UBERON:0001154,3.40e-07,1;UBERON:0001153,3.40e-07,1;UBERON:0001045,3.40e-07,1;UBERON:0007029,3.82e-07,1;UBERON:0000989,4.57e-07,1;UBERON:0008811,4.57e-07,1;UBERON:0006258,4.57e-07,1;UBERON:0005876,4.57e-07,1;UBERON:0004874,4.57e-07,1;UBERON:0002363,4.85e-07,1;UBERON:0007645,4.85e-07,1;UBERON:0007647,4.85e-07,1;UBERON:0010115,4.85e-07,1;UBERON:0005631,5.63e-07,14;UBERON:0000158,5.63e-07,14;UBERON:0003112,8.67e-07,1;UBERON:0011158,8.67e-07,1;UBERON:0003128,8.67e-07,1;UBERON:0001703,8.67e-07,1;UBERON:0002241,8.67e-07,1;UBERON:0004761,8.67e-07,1;UBERON:0009617,8.67e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154934401160603,2.98555388223585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.818238361772504,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.309123034943167,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.4733694469006,1.78178808499583,13.8222315944654,0,0,0,0,0,0.796991953004279,2.76283915531148,0,0,0.369254416383208,0,0,0,0,0.493217028184668,0,0,0.969332746095218,1.11321717794222,0,0,0,0.724999575434793,0,0,0,0,0.291604613383254,0,0,0.120596438625408,0,0,0,0.658156191461918,0,0.278847488557207,3.46276163267087,0,0.69169171316418,0.0897576444097721,0.325942115766024,2.55200927785536,0.549585560411174,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,11.9431431729421,1.06149077404007,10.3875124638716,0,0,0,0,0,0,0.364909578431332,0,0,0,0,0,1.95878396848313,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,12.7055611599829,0,0.677942222341597,0,0,0.949661939338181,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0.558564802544508,0.229160424011684,0.717873024576814,0,0,0,1.2764859772478,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0.2249738915515,0.77380195455795,0.546746009922222,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0.197611631897944,5.48066692714032,0.638341257770182,0,0.2506898940227,0,0,0,0.886068179966986,1.46431517882356,1.1267183763585,0.573409195690071,0.332787154610557,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07387654227596,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0.619678821295011,0,0,0,0,0,0,0.449604575675217,0,0.319267718114302,0.615349092722265,0,0.138314504928436,1.13032951942296,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.135075169236789,1.56215619722769,1.44680757550829,0.760989722326882,0,0.548257766857182,1.98484471355718,0.879356221798103,0,0.535701835878287,0,0.606965604236632,0,0.266107110487916,0.115233987555779,0,0,0.394636641377094,0,0,0.156986185701028,0,0.280272163313789,6.39211104356647,0,0,0.214429632529969,0.158013611732727,0,0,0,0.62164849248911,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,2.4285549652957,0,0,0,0,0,0,0.231522474323834,6.55678681511872,0,0.735444965261716,0,1.57046773691956,0.594092800654172,0.4226557275834,0,0.187967835959707,0.515663103788617,0.0999411559249289,0,0,0,0,0,0.286679166302903,0,0.747906392100062,0,1.5870805215462,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0.757786982182394,1.07185652062471,0,0.103432995861895,6.18378547512845,0,0.129177819672012,0.0620747142958579,0,0,0,6.09606894111492,2.05339980651169,5.52286834719618,1.64961072403156,0.665320713092027,0,0,0,0,0,0.733448665097199,3.66206560484165,0,0.201273793591026,0 | |||
|short_description=p@chr4:144275173..144275206,+ | |||
}} |
Revision as of 02:36, 13 September 2013
Short description: | p@chr4:144275173..144275206, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:144275173..144275206, + |
Coexpression cluster: | C629_esophagus_amniotic_tongue_throat_tonsil_uterus_salivary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 1.96e-11 | 5 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.76e-15 | 17 |
adult organism | 5.63e-14 | 114 |
large intestine | 2.98e-13 | 11 |
middle temporal gyrus | 2.57e-12 | 2 |
colon | 1.28e-10 | 9 |
gastrointestinal system | 3.26e-10 | 25 |
gyrus | 5.97e-09 | 6 |
tongue | 8.41e-09 | 3 |
gustatory system | 8.41e-09 | 3 |
future tongue | 8.41e-09 | 3 |
amnion | 2.72e-08 | 7 |
tonsil | 2.52e-07 | 1 |
mucosa-associated lymphoid tissue | 2.52e-07 | 1 |
lymphoid tissue | 2.52e-07 | 1 |
tonsillar ring | 2.52e-07 | 1 |
somatic layer of lateral plate mesoderm | 2.63e-07 | 8 |
vermiform appendix | 3.40e-07 | 1 |
caecum | 3.40e-07 | 1 |
midgut | 3.40e-07 | 1 |
surface | 3.82e-07 | 1 |
penis | 4.57e-07 | 1 |
intromittent organ | 4.57e-07 | 1 |
lateral plate mesenchyme | 4.57e-07 | 1 |
undifferentiated genital tubercle | 4.57e-07 | 1 |
somatopleure | 4.57e-07 | 1 |
dura mater | 4.85e-07 | 1 |
future meninx | 4.85e-07 | 1 |
ectomeninx | 4.85e-07 | 1 |
future dura mater | 4.85e-07 | 1 |
extraembryonic membrane | 5.63e-07 | 14 |
membranous layer | 5.63e-07 | 14 |
olfactory region | 8.67e-07 | 1 |
primary subdivision of skull | 8.67e-07 | 1 |
cranium | 8.67e-07 | 1 |
neurocranium | 8.67e-07 | 1 |
chondrocranium | 8.67e-07 | 1 |
cartilaginous neurocranium | 8.67e-07 | 1 |
head paraxial mesoderm | 8.67e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.