FFCP PHASE1:Mm9::chr14:56197281..56197376,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19186|HGNC=|MCL_coexpression_id=2917|UniProt=G3UWN9,P97371,Q5HZK3|association_with_transcript=0bp_to_ENSMUST00000173388,ENSMUST00000173544,ENSMUST00000174563,ENSMUST00000174791,NM_011189,uc007tzd.1_5end|description=CAGE_peak_1_at_Psme1_5end|id=chr14:56197281..56197376,+|ontology_enrichment_celltype=CL:0000063!6.97e-12!66;CL:0000988!6.02e-10!32;CL:0002032!6.02e-10!32;CL:0000037!6.02e-10!32;CL:0000566!6.02e-10!32;CL:0000837!6.02e-10!32;CL:0002320!8.90e-10!46;CL:0000134!8.90e-10!46;CL:0000838!3.54e-08!12;CL:0000084!8.87e-08!11;CL:0000827!8.87e-08!11;CL:0002031!1.40e-07!25;CL:0000738!1.75e-07!17;CL:0002087!1.75e-07!17;CL:0000542!2.77e-07!13;CL:0000051!2.77e-07!13;CL:0000219!4.27e-07!54;CL:0000791!4.38e-07!9;CL:0000789!4.38e-07!9;CL:0002420!4.38e-07!9;CL:0002419!4.38e-07!9;CL:0000790!4.38e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,6.02e-10,32;CL:0002032,6.02e-10,32;CL:0000037,6.02e-10,32;CL:0000837,6.02e-10,32;CL:0002320,8.90e-10,46;CL:0000134,8.90e-10,46;CL:0000838,3.54e-08,12;CL:0000084,8.87e-08,11;CL:0000827,8.87e-08,11;CL:0002031,1.40e-07,25;CL:0000738,1.75e-07,17;CL:0002087,1.75e-07,17;CL:0000542,2.77e-07,13;CL:0000051,2.77e-07,13;CL:0000219,4.27e-07,54;CL:0000791,4.38e-07,9;CL:0000789,4.38e-07,9;CL:0002420,4.38e-07,9;CL:0002419,4.38e-07,9;CL:0000790,4.38e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!1.29e-13!70;UBERON:0001007!1.85e-13!128;UBERON:0001555!1.85e-13!128;UBERON:0007026!1.85e-13!128;UBERON:0004119!1.22e-12!130;UBERON:0000925!1.22e-12!130;UBERON:0006595!1.22e-12!130;UBERON:0004921!1.50e-12!126;UBERON:0004185!1.50e-12!126;UBERON:0003929!1.06e-10!55;UBERON:0005911!1.27e-10!69;UBERON:0000490!1.59e-10!66;UBERON:0002193!2.11e-10!48;UBERON:0002384!8.90e-10!46;UBERON:0000344!2.00e-09!15;UBERON:0002390!5.05e-09!45;UBERON:0003061!5.05e-09!45;UBERON:0001242!2.18e-08!13;UBERON:0000060!2.18e-08!13;UBERON:0001262!2.18e-08!13;UBERON:0004786!2.18e-08!13;UBERON:0005057!8.18e-08!51;UBERON:0004923!1.22e-07!24;UBERON:0000926!3.29e-07!193;UBERON:0004120!3.29e-07!193;UBERON:0006603!3.29e-07!193;UBERON:0002368!5.31e-07!60|ontology_enrichment_uberon_v019_2=UBERON:0001007,3.15e-16,116;UBERON:0001555,3.15e-16,116;UBERON:0007026,3.15e-16,116;UBERON:0004119,2.94e-15,118;UBERON:0000925,2.94e-15,118;UBERON:0006595,2.94e-15,118;UBERON:0004921,3.16e-15,114;UBERON:0000160,4.91e-11,31;UBERON:0003929,1.06e-10,55;UBERON:0005911,1.27e-10,69;UBERON:0000490,1.59e-10,66;UBERON:0002193,2.11e-10,48;UBERON:0002405,2.11e-10,48;UBERON:0002384,8.90e-10,46;UBERON:0000344,2.00e-09,15;UBERON:0005409,2.85e-09,47;UBERON:0002390,5.05e-09,45;UBERON:0003061,5.05e-09,45;UBERON:0001242,2.18e-08,13;UBERON:0001262,2.18e-08,13;UBERON:0004786,2.18e-08,13;UBERON:0004923,1.22e-07,24;UBERON:0002368,5.31e-07,60;UBERON:0000926,8.33e-07,120;UBERON:0004120,8.33e-07,120;UBERON:0006603,8.33e-07,120|phase1_expression=114.186127985718,450.527251262415,415.869304802036,329.081061901831,360.64492556137,276.665040110794,316.545128006937,499.061645101692,686.485809211527,773.115130441544,589.332246632188,609.858155519347,437.931467164024,469.272720185178,130.912136393555,166.232194527047,108.432091109863,402.214260831753,328.52618291935,352.667800644163,93.80274903663,272.057206290426,296.200560883553,370.382458766736,392.289870624861,502.452968600643,558.267547022161,451.412232476938,496.531195039505,621.758330117749,503.549989698197,97.1596930393236,99.6404955887004,79.2408405077194,366.552705464367,411.430747262269,398.334414067882,324.78054545184,445.361146378566,394.21337921227,316.468540560686,314.200923080885,350.538474888493,175.751957893906,172.847667729272,108.843224031877,190.121096676574,85.9019116138959,94.9044309412918,84.5770060973133,117.588594165305,86.2515386189829,312.243429873447,331.490498899184,457.423660632893,67.1447128053822,88.5388329410758,71.162748734287,106.823091333868,87.8125025591575,93.8070477189145,100.297981492463,128.058450640004,249.722171545588,285.782378781856,289.165406783063,103.661638239368,102.202069215534,70.4052467574563,75.7383314040785,78.4512105840655,94.550475837659,110.87600755771,71.7796083399631,81.7561867785556,50.5570332635512,30.8324466798288,31.283397830871,32.7181915835799,85.726087024626,96.7939269313494,98.9735404057844,44.9484628392223,63.0294123235482,55.9241586863125,78.3712037359956,84.5687783946671,77.7285689091503,31.5778226199377,55.6962397987009,231.311861983939,295.985813681597,150.953636083121,201.309290480906,152.047681682755,129.47977037113,141.989308753201,66.8086864505986,86.2489535281524,62.8944442628406,100.56220172055,76.9958864485907,58.6052051325285,35.5533351576666,94.1736028398781,89.1826726472347,82.9060089824245,190.344527491673,365.879229593454,189.560611585781,117.276080893908,179.330166725851,173.422853936556,184.032344114752,166.152843182751,216.397870269701,127.305408383203,209.379868820032,131.806972240531,64.2214394291214,76.4111653872962,79.5195415141764,169.616502708491,23.1296829639122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| ||
|EntrezGene=19186 | |||
|HGNC= | |||
|MCL_coexpression_id=2917 | |||
|UniProt=G3UWN9,P97371,Q5HZK3 | |||
|association_with_transcript=0bp_to_ENSMUST00000173388,ENSMUST00000173544,ENSMUST00000174563,ENSMUST00000174791,NM_011189,uc007tzd.1_5end | |||
|description=CAGE_peak_1_at_Psme1_5end | |||
|id=chr14:56197281..56197376,+ | |||
|ontology_enrichment_celltype=CL:0000063!6.97e-12!66;CL:0000988!6.02e-10!32;CL:0002032!6.02e-10!32;CL:0000037!6.02e-10!32;CL:0000566!6.02e-10!32;CL:0000837!6.02e-10!32;CL:0002320!8.90e-10!46;CL:0000134!8.90e-10!46;CL:0000838!3.54e-08!12;CL:0000084!8.87e-08!11;CL:0000827!8.87e-08!11;CL:0002031!1.40e-07!25;CL:0000738!1.75e-07!17;CL:0002087!1.75e-07!17;CL:0000542!2.77e-07!13;CL:0000051!2.77e-07!13;CL:0000219!4.27e-07!54;CL:0000791!4.38e-07!9;CL:0000789!4.38e-07!9;CL:0002420!4.38e-07!9;CL:0002419!4.38e-07!9;CL:0000790!4.38e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,6.02e-10,32;CL:0002032,6.02e-10,32;CL:0000037,6.02e-10,32;CL:0000837,6.02e-10,32;CL:0002320,8.90e-10,46;CL:0000134,8.90e-10,46;CL:0000838,3.54e-08,12;CL:0000084,8.87e-08,11;CL:0000827,8.87e-08,11;CL:0002031,1.40e-07,25;CL:0000738,1.75e-07,17;CL:0002087,1.75e-07,17;CL:0000542,2.77e-07,13;CL:0000051,2.77e-07,13;CL:0000219,4.27e-07,54;CL:0000791,4.38e-07,9;CL:0000789,4.38e-07,9;CL:0002420,4.38e-07,9;CL:0002419,4.38e-07,9;CL:0000790,4.38e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.29e-13!70;UBERON:0001007!1.85e-13!128;UBERON:0001555!1.85e-13!128;UBERON:0007026!1.85e-13!128;UBERON:0004119!1.22e-12!130;UBERON:0000925!1.22e-12!130;UBERON:0006595!1.22e-12!130;UBERON:0004921!1.50e-12!126;UBERON:0004185!1.50e-12!126;UBERON:0003929!1.06e-10!55;UBERON:0005911!1.27e-10!69;UBERON:0000490!1.59e-10!66;UBERON:0002193!2.11e-10!48;UBERON:0002384!8.90e-10!46;UBERON:0000344!2.00e-09!15;UBERON:0002390!5.05e-09!45;UBERON:0003061!5.05e-09!45;UBERON:0001242!2.18e-08!13;UBERON:0000060!2.18e-08!13;UBERON:0001262!2.18e-08!13;UBERON:0004786!2.18e-08!13;UBERON:0005057!8.18e-08!51;UBERON:0004923!1.22e-07!24;UBERON:0000926!3.29e-07!193;UBERON:0004120!3.29e-07!193;UBERON:0006603!3.29e-07!193;UBERON:0002368!5.31e-07!60 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,3.15e-16,116;UBERON:0001555,3.15e-16,116;UBERON:0007026,3.15e-16,116;UBERON:0004119,2.94e-15,118;UBERON:0000925,2.94e-15,118;UBERON:0006595,2.94e-15,118;UBERON:0004921,3.16e-15,114;UBERON:0000160,4.91e-11,31;UBERON:0003929,1.06e-10,55;UBERON:0005911,1.27e-10,69;UBERON:0000490,1.59e-10,66;UBERON:0002193,2.11e-10,48;UBERON:0002405,2.11e-10,48;UBERON:0002384,8.90e-10,46;UBERON:0000344,2.00e-09,15;UBERON:0005409,2.85e-09,47;UBERON:0002390,5.05e-09,45;UBERON:0003061,5.05e-09,45;UBERON:0001242,2.18e-08,13;UBERON:0001262,2.18e-08,13;UBERON:0004786,2.18e-08,13;UBERON:0004923,1.22e-07,24;UBERON:0002368,5.31e-07,60;UBERON:0000926,8.33e-07,120;UBERON:0004120,8.33e-07,120;UBERON:0006603,8.33e-07,120 | |||
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| |||
|short_description=p1@Psme1 | |||
}} |
Revision as of 02:32, 13 September 2013
Short description: | p1@Psme1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Psme1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2917 |
Association with transcript: | 0bp_to_ENSMUST00000173388, ENSMUST00000173544, ENSMUST00000174563, ENSMUST00000174791, NM_011189, uc007tzd.1_5end |
EntrezGene: | Psme1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 6.02e-10 | 32 |
hematopoietic oligopotent progenitor cell | 6.02e-10 | 32 |
hematopoietic stem cell | 6.02e-10 | 32 |
hematopoietic multipotent progenitor cell | 6.02e-10 | 32 |
connective tissue cell | 8.90e-10 | 46 |
mesenchymal cell | 8.90e-10 | 46 |
lymphoid lineage restricted progenitor cell | 3.54e-08 | 12 |
T cell | 8.87e-08 | 11 |
pro-T cell | 8.87e-08 | 11 |
hematopoietic lineage restricted progenitor cell | 1.40e-07 | 25 |
leukocyte | 1.75e-07 | 17 |
nongranular leukocyte | 1.75e-07 | 17 |
lymphocyte | 2.77e-07 | 13 |
common lymphoid progenitor | 2.77e-07 | 13 |
motile cell | 4.27e-07 | 54 |
mature alpha-beta T cell | 4.38e-07 | 9 |
alpha-beta T cell | 4.38e-07 | 9 |
immature T cell | 4.38e-07 | 9 |
mature T cell | 4.38e-07 | 9 |
immature alpha-beta T cell | 4.38e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
digestive system | 3.15e-16 | 116 |
digestive tract | 3.15e-16 | 116 |
primitive gut | 3.15e-16 | 116 |
endoderm-derived structure | 2.94e-15 | 118 |
endoderm | 2.94e-15 | 118 |
presumptive endoderm | 2.94e-15 | 118 |
subdivision of digestive tract | 3.16e-15 | 114 |
intestine | 4.91e-11 | 31 |
gut epithelium | 1.06e-10 | 55 |
endo-epithelium | 1.27e-10 | 69 |
unilaminar epithelium | 1.59e-10 | 66 |
hemolymphoid system | 2.11e-10 | 48 |
immune system | 2.11e-10 | 48 |
connective tissue | 8.90e-10 | 46 |
mucosa | 2.00e-09 | 15 |
gastrointestinal system | 2.85e-09 | 47 |
hematopoietic system | 5.05e-09 | 45 |
blood island | 5.05e-09 | 45 |
intestinal mucosa | 2.18e-08 | 13 |
wall of intestine | 2.18e-08 | 13 |
gastrointestinal system mucosa | 2.18e-08 | 13 |
organ component layer | 1.22e-07 | 24 |
endocrine gland | 5.31e-07 | 60 |
mesoderm | 8.33e-07 | 120 |
mesoderm-derived structure | 8.33e-07 | 120 |
presumptive mesoderm | 8.33e-07 | 120 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.