FFCP PHASE1:Hg19::chr4:13546583..13546593,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=579|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=951|TSSclassifier=S|UniProt=P78367|association_with_transcript=80bp_to_ENST00000382438_5end|description=CAGE_peak_3_at_NKX3-2_5end|id=chr4:13546583..13546593,-|ontology_enrichment_celltype=CL:0002504!3.30e-09!3;CL:1000279!3.30e-09!3;CL:1000280!3.30e-09!3;CL:0002602!2.05e-07!2|ontology_enrichment_celltype_v019=CL:0002602;1.14e-50;2!CL:0002615;1.53e-09;3!CL:0002564;1.53e-09;3!CL:0000306;1.80e-07;4!CL:0002222;1.80e-07;4!CL:0002224;1.80e-07;4|ontology_enrichment_celltype_v019_2=CL:0002602,1.14e-50,2;CL:0002564,1.41e-09,3;CL:0002615,1.67e-09,3;CL:0000306,2.04e-07,4;CL:0002222,2.04e-07,4;CL:0002224,2.04e-07,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3095!1.93e-10!22;DOID:2994!1.93e-10!22;DOID:171!6.72e-07!10|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001155!5.88e-15!9;UBERON:0000059!5.02e-12!11;UBERON:0005409!1.09e-08!35;UBERON:0009568!2.05e-07!2;UBERON:0002216!2.05e-07!2;UBERON:0002209!2.05e-07!2;UBERON:0002213!2.05e-07!2;UBERON:0004267!2.05e-07!2;UBERON:0006444!2.05e-07!2;UBERON:0001995!2.05e-07!2;UBERON:0004715!2.05e-07!2;UBERON:0001468!2.05e-07!2;UBERON:0001130!2.05e-07!2;UBERON:0001066!2.05e-07!2|ontology_enrichment_uberon_v019=UBERON:0006444;1.14e-50;2!UBERON:0001995;1.14e-50;2!UBERON:0004715;1.14e-50;2!UBERON:0011135;3.46e-45;5!UBERON:0002216;3.46e-45;5!UBERON:0011134;3.46e-45;5!UBERON:0002209;3.46e-45;5!UBERON:0002213;3.46e-45;5!UBERON:0007844;3.46e-45;5!UBERON:0011138;3.46e-45;5!UBERON:0001130;3.46e-45;5!UBERON:0001066;3.46e-45;5!UBERON:0001468;3.46e-45;5!UBERON:0002418;3.33e-34;3!UBERON:0004755;3.33e-34;3!UBERON:0004905;1.36e-28;8!UBERON:0000982;1.36e-28;8!UBERON:0004770;1.36e-28;8!UBERON:0000075;1.06e-14;16!UBERON:0002242;1.53e-09;3!UBERON:0004765;2.59e-09;26!UBERON:0010077;1.80e-07;4!UBERON:0005389;1.80e-07;4!UBERON:0000484;1.80e-07;4!UBERON:0000965;1.80e-07;4!UBERON:0001803;1.80e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0006444,1.14e-50,2;UBERON:0001995,1.14e-50,2;UBERON:0004715,1.14e-50,2;UBERON:0011135,2.98e-45,5;UBERON:0002216,2.98e-45,5;UBERON:0011134,2.98e-45,5;UBERON:0002209,2.98e-45,5;UBERON:0002213,2.98e-45,5;UBERON:0005856,2.98e-45,5;UBERON:0005866,2.98e-45,5;UBERON:0005863,2.98e-45,5;UBERON:0007844,2.98e-45,5;UBERON:0011138,2.98e-45,5;UBERON:0001130,2.98e-45,5;UBERON:0001066,2.98e-45,5;UBERON:0001468,2.98e-45,5;UBERON:0002418,3.33e-34,3;UBERON:0004755,3.33e-34,3;UBERON:0004905,1.23e-28,8;UBERON:0000982,1.23e-28,8;UBERON:0004770,1.23e-28,8;UBERON:0000075,1.01e-14,16;UBERON:0002242,1.41e-09,3;UBERON:0003068,1.41e-09,3;UBERON:0002328,1.41e-09,3;UBERON:0004880,1.41e-09,3;UBERON:0010077,2.04e-07,4;UBERON:0005389,2.04e-07,4;UBERON:0000484,2.04e-07,4;UBERON:0002546,2.04e-07,4;UBERON:0000965,2.04e-07,4;UBERON:0001803,2.04e-07,4;UBERON:0003073,2.04e-07,4;UBERON:0005426,2.04e-07,4|phase1_expression=0,0,0,0,1.34088328328186,0,0,0,0,0,0,0,0,2.84662611808107,4.97096063591874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8403723757871,0,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.965123526861645,0,0,0,0,0,0,0,0,0,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0.165018999841176,0,0,0,0.193341436584244,0,0,0,0,0,0.170453254832202,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.54907405947211,0.353437207037059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0.156980256395025,0,0,0,0.167821586975843,0,0,0,0,0,0.216388639742091,1.99052386215701,0.707660516026713,0,1.48260564340311,0.86494757262552,0.313265848516366,0,0,0,0,0,0,0,3.62972148145992,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229073192331831,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,1.19730191562487,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=579 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=951 | |||
|TSSclassifier=S | |||
|UniProt=P78367 | |||
|association_with_transcript=80bp_to_ENST00000382438_5end | |||
|description=CAGE_peak_3_at_NKX3-2_5end | |||
|id=chr4:13546583..13546593,- | |||
|ontology_enrichment_celltype=CL:0002504!3.30e-09!3;CL:1000279!3.30e-09!3;CL:1000280!3.30e-09!3;CL:0002602!2.05e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002602;1.14e-50;2!CL:0002615;1.53e-09;3!CL:0002564;1.53e-09;3!CL:0000306;1.80e-07;4!CL:0002222;1.80e-07;4!CL:0002224;1.80e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002602,1.14e-50,2;CL:0002564,1.41e-09,3;CL:0002615,1.67e-09,3;CL:0000306,2.04e-07,4;CL:0002222,2.04e-07,4;CL:0002224,2.04e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!1.93e-10!22;DOID:2994!1.93e-10!22;DOID:171!6.72e-07!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001155!5.88e-15!9;UBERON:0000059!5.02e-12!11;UBERON:0005409!1.09e-08!35;UBERON:0009568!2.05e-07!2;UBERON:0002216!2.05e-07!2;UBERON:0002209!2.05e-07!2;UBERON:0002213!2.05e-07!2;UBERON:0004267!2.05e-07!2;UBERON:0006444!2.05e-07!2;UBERON:0001995!2.05e-07!2;UBERON:0004715!2.05e-07!2;UBERON:0001468!2.05e-07!2;UBERON:0001130!2.05e-07!2;UBERON:0001066!2.05e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0006444;1.14e-50;2!UBERON:0001995;1.14e-50;2!UBERON:0004715;1.14e-50;2!UBERON:0011135;3.46e-45;5!UBERON:0002216;3.46e-45;5!UBERON:0011134;3.46e-45;5!UBERON:0002209;3.46e-45;5!UBERON:0002213;3.46e-45;5!UBERON:0007844;3.46e-45;5!UBERON:0011138;3.46e-45;5!UBERON:0001130;3.46e-45;5!UBERON:0001066;3.46e-45;5!UBERON:0001468;3.46e-45;5!UBERON:0002418;3.33e-34;3!UBERON:0004755;3.33e-34;3!UBERON:0004905;1.36e-28;8!UBERON:0000982;1.36e-28;8!UBERON:0004770;1.36e-28;8!UBERON:0000075;1.06e-14;16!UBERON:0002242;1.53e-09;3!UBERON:0004765;2.59e-09;26!UBERON:0010077;1.80e-07;4!UBERON:0005389;1.80e-07;4!UBERON:0000484;1.80e-07;4!UBERON:0000965;1.80e-07;4!UBERON:0001803;1.80e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006444,1.14e-50,2;UBERON:0001995,1.14e-50,2;UBERON:0004715,1.14e-50,2;UBERON:0011135,2.98e-45,5;UBERON:0002216,2.98e-45,5;UBERON:0011134,2.98e-45,5;UBERON:0002209,2.98e-45,5;UBERON:0002213,2.98e-45,5;UBERON:0005856,2.98e-45,5;UBERON:0005866,2.98e-45,5;UBERON:0005863,2.98e-45,5;UBERON:0007844,2.98e-45,5;UBERON:0011138,2.98e-45,5;UBERON:0001130,2.98e-45,5;UBERON:0001066,2.98e-45,5;UBERON:0001468,2.98e-45,5;UBERON:0002418,3.33e-34,3;UBERON:0004755,3.33e-34,3;UBERON:0004905,1.23e-28,8;UBERON:0000982,1.23e-28,8;UBERON:0004770,1.23e-28,8;UBERON:0000075,1.01e-14,16;UBERON:0002242,1.41e-09,3;UBERON:0003068,1.41e-09,3;UBERON:0002328,1.41e-09,3;UBERON:0004880,1.41e-09,3;UBERON:0010077,2.04e-07,4;UBERON:0005389,2.04e-07,4;UBERON:0000484,2.04e-07,4;UBERON:0002546,2.04e-07,4;UBERON:0000965,2.04e-07,4;UBERON:0001803,2.04e-07,4;UBERON:0003073,2.04e-07,4;UBERON:0005426,2.04e-07,4 | |||
|phase1_expression=0,0,0,0,1.34088328328186,0,0,0,0,0,0,0,0,2.84662611808107,4.97096063591874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8403723757871,0,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.965123526861645,0,0,0,0,0,0,0,0,0,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0.165018999841176,0,0,0,0.193341436584244,0,0,0,0,0,0.170453254832202,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.54907405947211,0.353437207037059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0.156980256395025,0,0,0,0.167821586975843,0,0,0,0,0,0.216388639742091,1.99052386215701,0.707660516026713,0,1.48260564340311,0.86494757262552,0.313265848516366,0,0,0,0,0,0,0,3.62972148145992,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229073192331831,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0.169732529954025,0.212574920101683,0.495743057036009,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347716544605159,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.154348316215889,0.218559560503957,0,0,0.471353094203252,0,0,0,0,0,0.386747327841463,0,0,0,0,0.730336388246517,0,0,0.473314686579554,0,0,0,0,0,0,0,0.109265571963696,0.126698501011437,0.203977659483963,0,0.459474497674225,0,0,0.267964130156178,0,0,0.213233981900981,0.476128862927481,0,0,0,0,0,0.217716747896961,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | |||
|short_description=p3@NKX3-2 | |||
}} |
Revision as of 02:25, 13 September 2013
Short description: | p3@NKX3-2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NKX3-2_5end |
Coexpression cluster: | NA |
Association with transcript: | 80bp_to_ENST00000382438_5end |
EntrezGene: | NKX3-2 |
HGNC: | 951 |
UniProt: | P78367 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
annulus pulposus cell | 1.14e-50 | 2 |
nucleus pulposus cell of intervertebral disc | 1.41e-09 | 3 |
adipocyte of omentum tissue | 1.67e-09 | 3 |
crystallin accumulating cell | 2.04e-07 | 4 |
vertebrate lens cell | 2.04e-07 | 4 |
lens epithelial cell | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
annulus fibrosus | 1.14e-50 | 2 |
fibrocartilage | 1.14e-50 | 2 |
annulus fibrosus disci intervertebralis | 1.14e-50 | 2 |
intervertebral cartilage | 2.98e-45 | 5 |
symphysis | 2.98e-45 | 5 |
nonsynovial joint | 2.98e-45 | 5 |
fibrous joint | 2.98e-45 | 5 |
cartilaginous joint | 2.98e-45 | 5 |
developing mesenchymal condensation | 2.98e-45 | 5 |
pre-cartilage condensation | 2.98e-45 | 5 |
cartilaginous condensation | 2.98e-45 | 5 |
cartilage element | 2.98e-45 | 5 |
post-cranial axial skeletal system | 2.98e-45 | 5 |
vertebral column | 2.98e-45 | 5 |
intervertebral disk | 2.98e-45 | 5 |
intervertebral joint | 2.98e-45 | 5 |
cartilage tissue | 3.33e-34 | 3 |
skeletal tissue | 3.33e-34 | 3 |
articulation | 1.23e-28 | 8 |
skeletal joint | 1.23e-28 | 8 |
articular system | 1.23e-28 | 8 |
subdivision of skeletal system | 1.01e-14 | 16 |
nucleus pulposus | 1.41e-09 | 3 |
axial mesoderm | 1.41e-09 | 3 |
notochord | 1.41e-09 | 3 |
chordamesoderm | 1.41e-09 | 3 |
cuboidal epithelium | 2.04e-07 | 4 |
transparent eye structure | 2.04e-07 | 4 |
simple cuboidal epithelium | 2.04e-07 | 4 |
cranial placode | 2.04e-07 | 4 |
lens of camera-type eye | 2.04e-07 | 4 |
epithelium of lens | 2.04e-07 | 4 |
lens placode | 2.04e-07 | 4 |
lens vesicle | 2.04e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.