FFCP PHASE1:Hg19::chr3:55502162..55502167,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7474|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=12784|TSSclassifier=N|UniProt=|association_with_transcript=-355bp_to_AK021503_5end|coexpression_cluster_id=C1929|description=CAGE_peak_2_at_WNT5A_5end|id=chr3:55502162..55502167,-|ontology_enrichment_celltype=CL:0000055!6.30e-20!180;CL:0000057!9.36e-12!75;CL:0000680!2.73e-08!57;CL:0000056!2.73e-08!57;CL:0000355!2.73e-08!57;CL:0002620!1.35e-07!23;CL:0000187!2.28e-07!54;CL:0000183!5.43e-07!59|ontology_enrichment_celltype_v019=CL:0000134;4.18e-10;55!CL:0000349;3.94e-09;19!CL:0000723;1.05e-08;61!CL:0002620;2.06e-08;23!CL:0000048;5.65e-08;58!CL:0000034;3.68e-07;69!CL:0002320;7.41e-07;188|ontology_enrichment_celltype_v019_2=CL:0000057,5.83e-14,76;CL:0000349,5.01e-09,19;CL:0002620,1.87e-08,23;CL:0000680,3.58e-08,58;CL:0000056,3.58e-08,58;CL:0000355,3.58e-08,58;CL:0000187,3.67e-07,55|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;2.86e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,2.23e-07,14|ontology_enrichment_uberon=UBERON:0000914!3.59e-12!83;UBERON:0002329!3.59e-12!83;UBERON:0003077!3.59e-12!83;UBERON:0003059!3.59e-12!83;UBERON:0007282!3.59e-12!83;UBERON:0009618!3.59e-12!83;UBERON:0007285!3.59e-12!83;UBERON:0003102!4.43e-11!95;UBERON:0000486!4.68e-10!82;UBERON:0000475!1.03e-09!365;UBERON:0004290!4.39e-09!70;UBERON:0000481!2.16e-08!347;UBERON:0000468!3.35e-08!659;UBERON:0005256!4.84e-08!143;UBERON:0005631!6.71e-08!14;UBERON:0000158!6.71e-08!14;UBERON:0001134!1.32e-07!61;UBERON:0002036!1.32e-07!61;UBERON:0003082!1.32e-07!61;UBERON:0002385!2.48e-07!63;UBERON:0001015!2.48e-07!63;UBERON:0000383!2.48e-07!63;UBERON:0003104!3.41e-07!238;UBERON:0009142!3.41e-07!238;UBERON:0000478!3.67e-07!24;UBERON:0004923!7.21e-07!57;UBERON:0002199!7.97e-07!45;UBERON:0002416!7.97e-07!45|ontology_enrichment_uberon_v019=UBERON:0000478;9.33e-08;24!UBERON:0001434;1.36e-07;36!UBERON:0002204;1.50e-07;70!UBERON:0000305;9.52e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.01e-11,99;UBERON:0000486,1.21e-09,83;UBERON:0007524,4.63e-09,73;UBERON:0002329,6.11e-09,71;UBERON:0003059,6.11e-09,71;UBERON:0007282,6.11e-09,71;UBERON:0004290,6.11e-09,71;UBERON:0009618,6.11e-09,71;UBERON:0003077,1.37e-08,72;UBERON:0007285,1.37e-08,72;UBERON:0005631,1.66e-08,14;UBERON:0000158,1.66e-08,14;UBERON:0004923,2.15e-08,66;UBERON:0007503,9.34e-08,78;UBERON:0000478,1.08e-07,24;UBERON:0001134,1.67e-07,62;UBERON:0002036,1.67e-07,62;UBERON:0003082,1.67e-07,62;UBERON:0002199,2.14e-07,46;UBERON:0002416,2.14e-07,46;UBERON:0002385,7.47e-07,64;UBERON:0001015,7.47e-07,64;UBERON:0000383,7.47e-07,64;UBERON:0000305,9.83e-07,7|phase1_expression=7.81217030863394,3.42560838225573,2.81908808191942,11.0080628188443,6.70441641640932,6.10636966870258,2.53299878168311,3.15859936713415,0,1.96587149201207,0.697801167972428,46.5280122637267,36.9273769519835,6.18831764800233,4.97096063591874,14.7911532219391,12.6565850885035,9.49403117503585,12.6862527685532,9.97280570421982,8.56802903225863,5.64218498660558,3.14859585844162,3.28498620174922,2.25976751270645,0.229240217243854,0.0821005894499457,0,0,0,1.70297735647684,0,0,1.10926203050036,1.16200800870452,0.426507697462265,0,0,0,0,1.56740831967947,0.971680998056939,0.257575567634187,0,0,0.242584061187816,0,0.822335776043652,0,0,0.256160706529101,0,0,0,0,0,0.545812300115692,0.898893937780338,0,0.641858054152187,0,0,0,0,0.290209238628584,1.13477044938228,1.86846674698672,0,0,0,0.605399502633369,0,1.58231193720442,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,109.154624020139,29.5789367275175,50.5514351173275,4.7717156823066,12.6525066278685,9.26441208207865,7.31707011626461,8.34430464084697,0.458426764241994,0.364295288292542,0.741568885568859,4.21911611751088,2.43781632218974,1.32957960518865,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.71153252537342,0,1.61131726843659,0.760272105718513,0.24406205754817,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,6.46063537203914,0,2.78059279707759,0.573673241497627,1.41867352879343,0,3.20246987189115,1.72667283892012,0,3.23305612967251,0,1.96764655938411,0,2.34321431833797,2.18512053781224,0.570471821544449,3.13842229158782,1.76151747965647,2.26622122115384,2.52811452064047,11.432633590274,10.1952483368767,3.20309921644873,123.552297157334,119.9244607001,0,3.59309070908119,8.24846958374924,3.25308151667107,1.93944880838928,11.8523957637826,60.0716079766079,31.8504684881985,2.1552114800404,6.09924761342131,32.4607231004222,33.2733084820512,10.5031883629541,30.8127062422932,9.79034052173391,15.2615822191904,6.91982962189192,3.70260619612555,8.83518209854401,33.3220633085124,4.52608959092673,9.23024940543197,12.896268573138,7.12154487704048,2.70565194428616,2.18196896472668,2.86804595389004,0.243947412259191,0.662648841607426,3.137236457477,1.347593715199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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7474 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12784 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-355bp_to_AK021503_5end | |||
|coexpression_cluster_id=C1929 | |||
|description=CAGE_peak_2_at_WNT5A_5end | |||
|id=chr3:55502162..55502167,- | |||
|ontology_enrichment_celltype=CL:0000055!6.30e-20!180;CL:0000057!9.36e-12!75;CL:0000680!2.73e-08!57;CL:0000056!2.73e-08!57;CL:0000355!2.73e-08!57;CL:0002620!1.35e-07!23;CL:0000187!2.28e-07!54;CL:0000183!5.43e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000134;4.18e-10;55!CL:0000349;3.94e-09;19!CL:0000723;1.05e-08;61!CL:0002620;2.06e-08;23!CL:0000048;5.65e-08;58!CL:0000034;3.68e-07;69!CL:0002320;7.41e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.83e-14,76;CL:0000349,5.01e-09,19;CL:0002620,1.87e-08,23;CL:0000680,3.58e-08,58;CL:0000056,3.58e-08,58;CL:0000355,3.58e-08,58;CL:0000187,3.67e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.86e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.23e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.59e-12!83;UBERON:0002329!3.59e-12!83;UBERON:0003077!3.59e-12!83;UBERON:0003059!3.59e-12!83;UBERON:0007282!3.59e-12!83;UBERON:0009618!3.59e-12!83;UBERON:0007285!3.59e-12!83;UBERON:0003102!4.43e-11!95;UBERON:0000486!4.68e-10!82;UBERON:0000475!1.03e-09!365;UBERON:0004290!4.39e-09!70;UBERON:0000481!2.16e-08!347;UBERON:0000468!3.35e-08!659;UBERON:0005256!4.84e-08!143;UBERON:0005631!6.71e-08!14;UBERON:0000158!6.71e-08!14;UBERON:0001134!1.32e-07!61;UBERON:0002036!1.32e-07!61;UBERON:0003082!1.32e-07!61;UBERON:0002385!2.48e-07!63;UBERON:0001015!2.48e-07!63;UBERON:0000383!2.48e-07!63;UBERON:0003104!3.41e-07!238;UBERON:0009142!3.41e-07!238;UBERON:0000478!3.67e-07!24;UBERON:0004923!7.21e-07!57;UBERON:0002199!7.97e-07!45;UBERON:0002416!7.97e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;9.33e-08;24!UBERON:0001434;1.36e-07;36!UBERON:0002204;1.50e-07;70!UBERON:0000305;9.52e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.01e-11,99;UBERON:0000486,1.21e-09,83;UBERON:0007524,4.63e-09,73;UBERON:0002329,6.11e-09,71;UBERON:0003059,6.11e-09,71;UBERON:0007282,6.11e-09,71;UBERON:0004290,6.11e-09,71;UBERON:0009618,6.11e-09,71;UBERON:0003077,1.37e-08,72;UBERON:0007285,1.37e-08,72;UBERON:0005631,1.66e-08,14;UBERON:0000158,1.66e-08,14;UBERON:0004923,2.15e-08,66;UBERON:0007503,9.34e-08,78;UBERON:0000478,1.08e-07,24;UBERON:0001134,1.67e-07,62;UBERON:0002036,1.67e-07,62;UBERON:0003082,1.67e-07,62;UBERON:0002199,2.14e-07,46;UBERON:0002416,2.14e-07,46;UBERON:0002385,7.47e-07,64;UBERON:0001015,7.47e-07,64;UBERON:0000383,7.47e-07,64;UBERON:0000305,9.83e-07,7 | |||
|phase1_expression=7.81217030863394,3.42560838225573,2.81908808191942,11.0080628188443,6.70441641640932,6.10636966870258,2.53299878168311,3.15859936713415,0,1.96587149201207,0.697801167972428,46.5280122637267,36.9273769519835,6.18831764800233,4.97096063591874,14.7911532219391,12.6565850885035,9.49403117503585,12.6862527685532,9.97280570421982,8.56802903225863,5.64218498660558,3.14859585844162,3.28498620174922,2.25976751270645,0.229240217243854,0.0821005894499457,0,0,0,1.70297735647684,0,0,1.10926203050036,1.16200800870452,0.426507697462265,0,0,0,0,1.56740831967947,0.971680998056939,0.257575567634187,0,0,0.242584061187816,0,0.822335776043652,0,0,0.256160706529101,0,0,0,0,0,0.545812300115692,0.898893937780338,0,0.641858054152187,0,0,0,0,0.290209238628584,1.13477044938228,1.86846674698672,0,0,0,0.605399502633369,0,1.58231193720442,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,109.154624020139,29.5789367275175,50.5514351173275,4.7717156823066,12.6525066278685,9.26441208207865,7.31707011626461,8.34430464084697,0.458426764241994,0.364295288292542,0.741568885568859,4.21911611751088,2.43781632218974,1.32957960518865,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.71153252537342,0,1.61131726843659,0.760272105718513,0.24406205754817,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,6.46063537203914,0,2.78059279707759,0.573673241497627,1.41867352879343,0,3.20246987189115,1.72667283892012,0,3.23305612967251,0,1.96764655938411,0,2.34321431833797,2.18512053781224,0.570471821544449,3.13842229158782,1.76151747965647,2.26622122115384,2.52811452064047,11.432633590274,10.1952483368767,3.20309921644873,123.552297157334,119.9244607001,0,3.59309070908119,8.24846958374924,3.25308151667107,1.93944880838928,11.8523957637826,60.0716079766079,31.8504684881985,2.1552114800404,6.09924761342131,32.4607231004222,33.2733084820512,10.5031883629541,30.8127062422932,9.79034052173391,15.2615822191904,6.91982962189192,3.70260619612555,8.83518209854401,33.3220633085124,4.52608959092673,9.23024940543197,12.896268573138,7.12154487704048,2.70565194428616,2.18196896472668,2.86804595389004,0.243947412259191,0.662648841607426,3.137236457477,1.34759371519982,1.51392510525377,0.72995471815166,20.3384392028761,63.0376119429028,2.76269842704961,16.7172454091512,2.16563844500876,10.2926916034664,9.10357326421749,8.19437501603839,11.470573164169,10.2403338723431,8.77901290711057,11.3258298854538,10.0072947213927,6.92544882503503,0,1.40241773803446,2.057870056657,0,0,0.982827216677626,0,0,0.122988438543114,15.0979673062702,1.86575485194663,0,0.201057944823262,1.66659201285353,0.977424915930974,3.11980435583874,11.5465073620219,2.66639931442677,3.75707821554629,0.288732895522148,0.462985512576611,0.570762456703795,0,0,0.246217006087397,0,0,6.56136837907439,6.88726725615324,2.1266264586358,0.268675568108545,0.290633938513962,0,0,0,0,0,0.12624243342638,0.952468414382536,0,0,0,1.85089486865982,0,0,0.560655421726804,3.92364061949952,3.00686971865895,4.39523833576444,0,32.121504597128,67.814219729142,50.9636440865694,4.8869401109807,2.83698264046557,1.8649552531127,9.43654758143774,4.88359444852299,8.23240336780769,37.1339250094858,6.75244702610837,58.6044385970738,23.2108320335881,5.22920075160176,8.29775826811074,0,0,0,1.19812427745791,0,4.27910715122155,11.003379306736,4.10952645100767,10.0274139414342,0,0,0,0,0,0,0,1.34013012267479,1.91381625495949,0,0,0,3.92612773501248,2.00068208423871,9.22301080579101,24.5405616606352,104.38095844634,92.4136152098857,43.8108892072747,0.601892199455438,0,0,8.63493278096067,0.553107505625109,23.4585759063824,0.195801157462741,1.37257369524342,0,0.215714200818617,0.106727557803444,15.156378572313,36.6157966923094,8.76931850656073,6.69891081110698,1.68808170616869,2.80660094433074,3.33161788064823,2.55853624533352,8.68611174175481,2.96836132889982,12.3367755042124,15.0927466516158,8.78760569347758,14.5391240171414,17.7801879043738,0.604297247958111,7.21823293091825,1.56537681191024,7.23331023437022,23.6718518408732,9.70320670699738,0,0.847168708148562,0,0,1.26661954671451,0,0.170093705276516,1.29549549661284,0,1.62567862526312,1.50506932156456,0.254876273045038,0,0.895499018888713,0,0,2.3080511260475,1.31205858279882,1.30151357865721,2.16386124460217,2.1060976908219,3.38288949674411,1.72279661398852,0.650060246036521,1.6068392984416,21.5575701791432,3.69716681075147,2.45605879561807,9.09721378397902,7.62683738564743,6.38073453222605,1.53407929348982,4.89676196057055,0.661139661443912,0.768760269460425,0.510450849978337,0.4046311234222,4.18360994367557,9.75918275174984,2.0911118104818,0.308033580176089,1.59691809095107,2.60979897622522,2.22389062924704,0.572499546967965,2.232950216158,4.11293252134344,4.76575484809562,0.767693373934002,1.28381696410176,0.636406495851874,1.56989728039846,11.6917097429155,4.39259247577688,5.1837457032102,1.61745985258653,0,4.21258456238981,2.438168695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| |||
|short_description=p2@WNT5A | |||
}} |
Revision as of 00:55, 13 September 2013
Short description: | p2@WNT5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_WNT5A_5end |
Coexpression cluster: | C1929_Fibroblast_Olfactory_mesenchymal_Chondrocyte_normal_Mesenchymal_Hair |
Association with transcript: | -355bp_to_AK021503_5end |
EntrezGene: | WNT5A |
HGNC: | 12784 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.83e-14 | 76 |
extraembryonic cell | 5.01e-09 | 19 |
skin fibroblast | 1.87e-08 | 23 |
muscle precursor cell | 3.58e-08 | 58 |
myoblast | 3.58e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.58e-08 | 58 |
muscle cell | 3.67e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.01e-11 | 99 |
multilaminar epithelium | 1.21e-09 | 83 |
dense mesenchyme tissue | 4.63e-09 | 73 |
somite | 6.11e-09 | 71 |
presomitic mesoderm | 6.11e-09 | 71 |
presumptive segmental plate | 6.11e-09 | 71 |
dermomyotome | 6.11e-09 | 71 |
trunk paraxial mesoderm | 6.11e-09 | 71 |
paraxial mesoderm | 1.37e-08 | 72 |
presumptive paraxial mesoderm | 1.37e-08 | 72 |
extraembryonic membrane | 1.66e-08 | 14 |
membranous layer | 1.66e-08 | 14 |
organ component layer | 2.15e-08 | 66 |
epithelial vesicle | 9.34e-08 | 78 |
extraembryonic structure | 1.08e-07 | 24 |
skeletal muscle tissue | 1.67e-07 | 62 |
striated muscle tissue | 1.67e-07 | 62 |
myotome | 1.67e-07 | 62 |
integument | 2.14e-07 | 46 |
integumental system | 2.14e-07 | 46 |
muscle tissue | 7.47e-07 | 64 |
musculature | 7.47e-07 | 64 |
musculature of body | 7.47e-07 | 64 |
amnion | 9.83e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.23e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.