FFCP PHASE1:Mm9::chr12:25667134..25667151,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2532|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:25667134..25667151,+|id=chr12:25667134..25667151,+|ontology_enrichment_celltype=CL:0000117!1.31e-12!23;CL:0000337!1.31e-12!23;CL:0000393!1.92e-10!39;CL:0000211!1.92e-10!39;CL:0000540!8.18e-10!33;CL:0000047!8.18e-10!33;CL:0000031!8.18e-10!33;CL:0000404!8.18e-10!33;CL:0000055!3.65e-07!50;CL:0002319!6.64e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,5.08e-26,23;CL:0000337,5.08e-26,23;CL:0000393,1.17e-17,39;CL:0000211,1.17e-17,39;CL:0000540,5.01e-17,33;CL:0000047,5.01e-17,33;CL:0000031,5.01e-17,33;CL:0000404,5.01e-17,33;CL:0002319,3.16e-12,43;CL:0000221,7.21e-12,44;CL:0000133,7.21e-12,44;CL:0002610,3.99e-09,3;CL:0002612,1.26e-08,3;CL:0002614,1.26e-08,3;CL:0002613,3.05e-08,3;CL:0002321,4.56e-08,70;CL:0000723,4.75e-07,91;CL:0000048,4.75e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.01e-17!34;UBERON:0001049!1.45e-17!52;UBERON:0005068!1.45e-17!52;UBERON:0006241!1.45e-17!52;UBERON:0007135!1.45e-17!52;UBERON:0001017!2.99e-16!73;UBERON:0005743!2.99e-16!73;UBERON:0002616!3.04e-16!49;UBERON:0000073!8.79e-16!75;UBERON:0001016!8.79e-16!75;UBERON:0000955!2.19e-15!50;UBERON:0006238!2.19e-15!50;UBERON:0003080!6.15e-15!40;UBERON:0002791!1.19e-14!29;UBERON:0003528!1.19e-14!29;UBERON:0001893!1.19e-14!29;UBERON:0002780!1.80e-14!39;UBERON:0001890!1.80e-14!39;UBERON:0006240!1.80e-14!39;UBERON:0002346!1.50e-13!71;UBERON:0003075!1.50e-13!71;UBERON:0007284!1.50e-13!71;UBERON:0003056!1.04e-12!49;UBERON:0000033!3.04e-12!63;UBERON:0004121!3.32e-10!102;UBERON:0000924!3.32e-10!102;UBERON:0006601!3.32e-10!102;UBERON:0000025!5.93e-10!114;UBERON:0000956!7.66e-10!21;UBERON:0001869!7.66e-10!21;UBERON:0000203!7.66e-10!21;UBERON:0007811!1.00e-08!86;UBERON:0004111!1.93e-08!122;UBERON:0000153!5.04e-08!94;UBERON:0002619!7.10e-08!17;UBERON:0002021!9.06e-08!10;UBERON:0000411!9.06e-08!10;UBERON:0001950!9.06e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0002020,4.01e-33,34;UBERON:0003528,6.41e-26,29;UBERON:0002791,6.41e-26,29;UBERON:0001893,6.41e-26,29;UBERON:0000073,9.43e-26,54;UBERON:0002021,3.92e-25,10;UBERON:0000411,3.92e-25,10;UBERON:0001950,3.92e-25,10;UBERON:0001017,5.81e-21,73;UBERON:0001016,3.02e-20,75;UBERON:0001049,6.40e-20,52;UBERON:0005068,6.40e-20,52;UBERON:0006241,6.40e-20,52;UBERON:0007135,6.40e-20,52;UBERON:0002780,3.33e-18,39;UBERON:0001890,3.33e-18,39;UBERON:0006240,3.33e-18,39;UBERON:0003080,1.20e-17,40;UBERON:0002346,3.02e-15,64;UBERON:0003075,3.02e-15,64;UBERON:0007284,3.02e-15,64;UBERON:0002420,3.89e-15,8;UBERON:0007245,3.89e-15,8;UBERON:0010009,3.89e-15,8;UBERON:0010011,3.89e-15,8;UBERON:0000454,3.89e-15,8;UBERON:0002616,8.35e-15,46;UBERON:0004121,9.59e-15,95;UBERON:0000924,9.59e-15,95;UBERON:0006601,9.59e-15,95;UBERON:0000955,2.11e-14,47;UBERON:0006238,2.11e-14,47;UBERON:0002619,5.79e-14,17;UBERON:0003056,1.20e-13,49;UBERON:0000956,1.69e-13,21;UBERON:0001869,1.69e-13,21;UBERON:0000203,1.69e-13,21;UBERON:0010371,9.39e-13,73;UBERON:0010314,3.28e-11,92;UBERON:0004684,3.99e-09,3;UBERON:0002275,3.99e-09,3;UBERON:0000025,4.45e-09,114;UBERON:0002038,1.26e-08,3;UBERON:0009663,1.26e-08,3;UBERON:0009661,1.26e-08,3;UBERON:0000125,1.26e-08,3;UBERON:0002308,1.26e-08,3;UBERON:0002257,1.26e-08,3;UBERON:0001948,1.73e-08,5;UBERON:0002315,1.73e-08,5;UBERON:0000369,2.38e-08,5;UBERON:0002435,2.38e-08,5;UBERON:0000204,2.38e-08,5;UBERON:0010082,2.38e-08,5;UBERON:0004111,4.00e-08,122;UBERON:0002240,4.47e-07,6;UBERON:0005174,4.47e-07,6;UBERON:0001137,4.47e-07,6|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.16787927191189,0.233612640595526,0.387369970324729,0.281577444303333,0,0.171217968225505,0.159544317990673,0.171200729931206,0.174840804837995,0,0,0,0.315462165358238,0.137114433605739,0,0.425216450755349,0.297872853602656,0,0.319984845586813,0.22940928106717,0,0,0,0.570070258369122,0,0.221730510655305,0,0.61506478758457,0,0.288851619751275,0,0,0.418531630736908,0.7813353445238,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0,0.218025156380447,0.219686182734472,0.58328969722285,0,0,0.167782606057736,0.725362142011344,0.672187598284928,1.02903774414379,0.85960031981627,1.03134418455488,1.01158230429799,0.528990979272033,1.90149421051854,0,0,0.449949858640699,0,0,0.299600110518405,0,0.622137673850866,6.88530285491622,0.841299845405528,1.14260393761521,0.883474163806454,0.979926393719632,0.958454710182364,0,3.30347642998166,4.08599481872601,3.37934373163736,1.18697658957174,2.74462930807229,2.6045668527838,3.07101298901519,3.93933827022176,1.22238598221448,2.94628585473668,5.41012387036591,1.1183966749518,0.075726193333184,0.226714680320357,0,0,0,0.539703191637817,0,0,0,1.1930122580464,0.259786004602869,0.35333957451034,0,0,0,0,0.216491041011214,0.506719730950197,0,0.11418387971906,0.258937883647172,0.29688427812965,0.346970653532272,0.304465478312141,0,0.60289056221049,0.117588707135705,0,0.247194967734374,0.433798070759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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2532 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:25667134..25667151,+ | |||
|id=chr12:25667134..25667151,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.31e-12!23;CL:0000337!1.31e-12!23;CL:0000393!1.92e-10!39;CL:0000211!1.92e-10!39;CL:0000540!8.18e-10!33;CL:0000047!8.18e-10!33;CL:0000031!8.18e-10!33;CL:0000404!8.18e-10!33;CL:0000055!3.65e-07!50;CL:0002319!6.64e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.08e-26,23;CL:0000337,5.08e-26,23;CL:0000393,1.17e-17,39;CL:0000211,1.17e-17,39;CL:0000540,5.01e-17,33;CL:0000047,5.01e-17,33;CL:0000031,5.01e-17,33;CL:0000404,5.01e-17,33;CL:0002319,3.16e-12,43;CL:0000221,7.21e-12,44;CL:0000133,7.21e-12,44;CL:0002610,3.99e-09,3;CL:0002612,1.26e-08,3;CL:0002614,1.26e-08,3;CL:0002613,3.05e-08,3;CL:0002321,4.56e-08,70;CL:0000723,4.75e-07,91;CL:0000048,4.75e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.01e-17!34;UBERON:0001049!1.45e-17!52;UBERON:0005068!1.45e-17!52;UBERON:0006241!1.45e-17!52;UBERON:0007135!1.45e-17!52;UBERON:0001017!2.99e-16!73;UBERON:0005743!2.99e-16!73;UBERON:0002616!3.04e-16!49;UBERON:0000073!8.79e-16!75;UBERON:0001016!8.79e-16!75;UBERON:0000955!2.19e-15!50;UBERON:0006238!2.19e-15!50;UBERON:0003080!6.15e-15!40;UBERON:0002791!1.19e-14!29;UBERON:0003528!1.19e-14!29;UBERON:0001893!1.19e-14!29;UBERON:0002780!1.80e-14!39;UBERON:0001890!1.80e-14!39;UBERON:0006240!1.80e-14!39;UBERON:0002346!1.50e-13!71;UBERON:0003075!1.50e-13!71;UBERON:0007284!1.50e-13!71;UBERON:0003056!1.04e-12!49;UBERON:0000033!3.04e-12!63;UBERON:0004121!3.32e-10!102;UBERON:0000924!3.32e-10!102;UBERON:0006601!3.32e-10!102;UBERON:0000025!5.93e-10!114;UBERON:0000956!7.66e-10!21;UBERON:0001869!7.66e-10!21;UBERON:0000203!7.66e-10!21;UBERON:0007811!1.00e-08!86;UBERON:0004111!1.93e-08!122;UBERON:0000153!5.04e-08!94;UBERON:0002619!7.10e-08!17;UBERON:0002021!9.06e-08!10;UBERON:0000411!9.06e-08!10;UBERON:0001950!9.06e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,4.01e-33,34;UBERON:0003528,6.41e-26,29;UBERON:0002791,6.41e-26,29;UBERON:0001893,6.41e-26,29;UBERON:0000073,9.43e-26,54;UBERON:0002021,3.92e-25,10;UBERON:0000411,3.92e-25,10;UBERON:0001950,3.92e-25,10;UBERON:0001017,5.81e-21,73;UBERON:0001016,3.02e-20,75;UBERON:0001049,6.40e-20,52;UBERON:0005068,6.40e-20,52;UBERON:0006241,6.40e-20,52;UBERON:0007135,6.40e-20,52;UBERON:0002780,3.33e-18,39;UBERON:0001890,3.33e-18,39;UBERON:0006240,3.33e-18,39;UBERON:0003080,1.20e-17,40;UBERON:0002346,3.02e-15,64;UBERON:0003075,3.02e-15,64;UBERON:0007284,3.02e-15,64;UBERON:0002420,3.89e-15,8;UBERON:0007245,3.89e-15,8;UBERON:0010009,3.89e-15,8;UBERON:0010011,3.89e-15,8;UBERON:0000454,3.89e-15,8;UBERON:0002616,8.35e-15,46;UBERON:0004121,9.59e-15,95;UBERON:0000924,9.59e-15,95;UBERON:0006601,9.59e-15,95;UBERON:0000955,2.11e-14,47;UBERON:0006238,2.11e-14,47;UBERON:0002619,5.79e-14,17;UBERON:0003056,1.20e-13,49;UBERON:0000956,1.69e-13,21;UBERON:0001869,1.69e-13,21;UBERON:0000203,1.69e-13,21;UBERON:0010371,9.39e-13,73;UBERON:0010314,3.28e-11,92;UBERON:0004684,3.99e-09,3;UBERON:0002275,3.99e-09,3;UBERON:0000025,4.45e-09,114;UBERON:0002038,1.26e-08,3;UBERON:0009663,1.26e-08,3;UBERON:0009661,1.26e-08,3;UBERON:0000125,1.26e-08,3;UBERON:0002308,1.26e-08,3;UBERON:0002257,1.26e-08,3;UBERON:0001948,1.73e-08,5;UBERON:0002315,1.73e-08,5;UBERON:0000369,2.38e-08,5;UBERON:0002435,2.38e-08,5;UBERON:0000204,2.38e-08,5;UBERON:0010082,2.38e-08,5;UBERON:0004111,4.00e-08,122;UBERON:0002240,4.47e-07,6;UBERON:0005174,4.47e-07,6;UBERON:0001137,4.47e-07,6 | |||
|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.16787927191189,0.233612640595526,0.387369970324729,0.281577444303333,0,0.171217968225505,0.159544317990673,0.171200729931206,0.174840804837995,0,0,0,0.315462165358238,0.137114433605739,0,0.425216450755349,0.297872853602656,0,0.319984845586813,0.22940928106717,0,0,0,0.570070258369122,0,0.221730510655305,0,0.61506478758457,0,0.288851619751275,0,0,0.418531630736908,0.7813353445238,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0,0.218025156380447,0.219686182734472,0.58328969722285,0,0,0.167782606057736,0.725362142011344,0.672187598284928,1.02903774414379,0.85960031981627,1.03134418455488,1.01158230429799,0.528990979272033,1.90149421051854,0,0,0.449949858640699,0,0,0.299600110518405,0,0.622137673850866,6.88530285491622,0.841299845405528,1.14260393761521,0.883474163806454,0.979926393719632,0.958454710182364,0,3.30347642998166,4.08599481872601,3.37934373163736,1.18697658957174,2.74462930807229,2.6045668527838,3.07101298901519,3.93933827022176,1.22238598221448,2.94628585473668,5.41012387036591,1.1183966749518,0.075726193333184,0.226714680320357,0,0,0,0.539703191637817,0,0,0,1.1930122580464,0.259786004602869,0.35333957451034,0,0,0,0,0.216491041011214,0.506719730950197,0,0.11418387971906,0.258937883647172,0.29688427812965,0.346970653532272,0.304465478312141,0,0.60289056221049,0.117588707135705,0,0.247194967734374,0.433798070759735,0,0.161766849947409,0.220841518460394,0.484875253135222,0,0.292780797011547,0.41889341362691,0,0.599075622529601,0.599902730993408,0.254140454146129,0.748953197024114,1.83000241127451,0.879580464790051,0.869121600961382,1.02286182932132,0.62336413367868,0.973447578406546,0,0.373220911830279,0,0.210441855886474,0.130120442962704,0.229902104433473,0.180062129805349,0.60281927134286,0.408218994907967,0.12811372028485,0.187403449119458,0,0.215567992932842,0.189106080167819,0.351902248327898,0,0.278047249225598,0,0.205782136407943,0,0.702213187313235,0.257347907114715,0,0.207125772535502,0.703578179943289,0.36012412292203,0.473489471170421,0.196764231747404,0.154267112887378,0.465067889500816,0.268273401399619,0.934122738937356,0.658239399653922,0.164167464079095,0.243206428637567,0.292399974850665,0,0,0.630869845692382,0.411618449517138,0.330418782983798,0.793351699990633,0,0.232236671860439,0.128867461322093,0.201683524623343,0.22237804384487,0.570676878337677,0.474529061544512,0.164698954724011,0.251335208800269,0,0,0,0.432276099749388,0.199141273254367,0,0.114248512609729,0,0.610953983535943,0.387904974335251,0.280543279561274,0.69560190836683,0.738050739898011,2.04098346193787,0.740382983530803,0.296452627087149,0,0,0,0,0.241177159752417,0,0,0.324270453550071,0.274561413188081,11.5014565221884,0.744281895337007,0.312037673114561,0.505157755894224,0,0,0.184753190166605,0,0,0.678980343100753,0.234690248288502,0,0,0.390267295715598,0,0.221464689648775,0,0.491589944147214,0.345369963731791,0.723245292907558,4.52373851817817,0,0,0,0.321101179975584,0.468846746368813,0,0.504941854408746,0,0,0.861693590931196,0.477937595905104,0.222798674082394,0.566153061577665,0,0.584511715822624,0,0,0.141940085208269,0.178065603667255,0.325773918707152,0.164970122972535,0,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,0.18006109403131,0.258717367565509,0.214337035031592,0.354680467284547,0.535106452806212,0.164549020602121,0.304464949114599,0,0.42366414172764,0,0,0,0.180938774784468,0,0.164140899745061,0,0.556275906031529,0.170870880797853,0,0.185194527369712,0.376736914009382,0.136694227721025,0,0.339956859987711,0.139951452323658,0.138199973804424,0,0.158167996790568,0,0.108005340821801,0,0.218362563746178,0.134864346384821,0,0.26175594198403,0.259229946583586,0,0,0,0.165458490457098,0.194451188344048,0,0.168956125490778,0.469428954583016,0,0.209718688851422,0.241584120826006,0,0,0,0,0.25984164595559,0,0.198681354781265,0.360586348559907,0.147689527174577,0.605798699688886,0.228620419965,0.604957110821043,0.487289403698762,0.384847366561318,0.467507608726276,0.226730383615211,0,0.179427713218951,0,0.386379188064381,0.187682475451182,0.183151624267265,0,0,3.3885110557024,1.84130094602871,2.86447756719698,1.71853182343688,2.74033007908257,1.5107877947794,1.35004500046361,4.95353323546643,4.07828168085784,3.62432218226274,0,0,0.170733605754134,0,0.209613162627982,0,0.222246727801615,0.412070114477788,0.320919209591815,0,0,0.188626341386076,0.280924522409647,0.384150914429216,0.287177344778066,0,0.463537303779422,0.578727661391115,0,0.294397840268795,0.342869252385415,0.532427418478012,0.715308569841963,0.145346416632329,0.188218760830661,0.169229215783353,0,1.57841826862706,0.135804113845862,0,0.237270036248348,0.197008964751127,0,0.154936841185966,0.578719832943424,0.499621155875892,0,0,0.191288332068843,0,0 | |||
|short_description=p@chr12:25667134..25667151,+ | |||
}} |
Revision as of 22:37, 12 September 2013
Short description: | p@chr12:25667134..25667151, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:25667134..25667151, + |
Coexpression cluster: | MCL_coexpression_mm9:2532 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.08e-26 | 23 |
neuroblast (sensu Vertebrata) | 5.08e-26 | 23 |
electrically responsive cell | 1.17e-17 | 39 |
electrically active cell | 1.17e-17 | 39 |
neuron | 5.01e-17 | 33 |
neuronal stem cell | 5.01e-17 | 33 |
neuroblast | 5.01e-17 | 33 |
electrically signaling cell | 5.01e-17 | 33 |
neural cell | 3.16e-12 | 43 |
ectodermal cell | 7.21e-12 | 44 |
neurectodermal cell | 7.21e-12 | 44 |
raphe nuclei neuron | 3.99e-09 | 3 |
neuron of the ventral spinal cord | 1.26e-08 | 3 |
neuron of the substantia nigra | 1.26e-08 | 3 |
striatum neuron | 3.05e-08 | 3 |
embryonic cell | 4.56e-08 | 70 |
somatic stem cell | 4.75e-07 | 91 |
multi fate stem cell | 4.75e-07 | 91 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.