FFCP PHASE1:Mm9::chr11:96160426..96160443,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=15414|HGNC=|MCL_coexpression_id=2010|UniProt=A2AA00,P09023|association_with_transcript=-41bp_to_NM_008269,uc007lbt.1_5end|description=CAGE_peak_2_at_Hoxb6_5end|id=chr11:96160426..96160443,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000489!3.83e-15!21;UBERON:0001008!1.65e-10!17;UBERON:0002113!2.06e-10!14;UBERON:0003918!2.06e-10!14;UBERON:0005095!2.06e-10!14;UBERON:0007687!2.06e-10!14;UBERON:0005157!3.14e-10!27;UBERON:0006554!4.10e-10!16;UBERON:0005177!7.77e-10!85;UBERON:0002100!3.48e-09!98;UBERON:0003064!1.45e-08!14;UBERON:0002342!4.48e-08!10;UBERON:0005062!4.48e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.31e-22,21;UBERON:0002113,4.11e-16,14;UBERON:0003918,4.11e-16,14;UBERON:0011143,4.11e-16,14;UBERON:0005095,4.11e-16,14;UBERON:0007687,4.11e-16,14;UBERON:0001008,3.00e-12,19;UBERON:0006554,1.37e-11,18;UBERON:0003064,4.21e-11,14;UBERON:0002240,2.49e-09,6;UBERON:0005174,2.49e-09,6;UBERON:0001137,2.49e-09,6;UBERON:0009569,6.00e-09,66;UBERON:0002100,9.11e-09,90;UBERON:0002369,3.22e-08,7;UBERON:0006858,3.22e-08,7;UBERON:0001948,3.76e-08,5;UBERON:0002315,3.76e-08,5;UBERON:0005177,6.32e-08,79;UBERON:0003103,8.16e-08,43;UBERON:0004175,7.21e-07,9;UBERON:0003104,8.91e-07,61;UBERON:0009142,8.91e-07,61;UBERON:0003076,9.83e-07,12;UBERON:0003057,9.83e-07,12|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31668831589172,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.80560271448579,5.98123894195136,10.8292583775392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.5673139862472,21.4242484723065,0,0,0,0,0,0,0,0,0,0,0,0,16.7938293719991,14.5219114415085,32.6199030194276,0,0,0.579728977403356,0,0,0,0,0,0.842666520790511,0.170430322578058,0,0,0,0,0,0,0,0.253359865475099,0,2.51204535381932,0,9.64873903921361,3.46970653532272,2.13125834818499,4.38169444786511,3.16517545160507,4.11560474974967,5.78066320116507,0,1.01219549843938,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0.457500602818626,0,0,0,0,0,4.07357455401265,7.2156042953854,57.1153434060105,0,0,0,0,0,0,0,0,0,0.215567992932842,0.189106080167819,0,0.43839146485515,0,0,0,0.995171334092466,0,0,0,0,0.469052119962192,0,0.710234206755631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55945900642281,3.0190767341857,2.19074684247559,2.01683524623343,1.77902435075896,1.71203063501303,0.949058123089023,0.823494773620054,0.502670417600539,0.397912944082302,0.38992817423824,0,0.432276099749388,0.199141273254367,7.39704813717019,2.74196430263349,4.50830942692322,6.31319116320474,3.29719228184964,4.9095073923223,3.79419222745544,5.75679577120448,5.18095801876537,4.93588655687202,0,0.166845105716094,0.196558995113203,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.369506380333209,13.6433816474749,8.31121379854332,2.8856664581782,1.87752198630802,1.00503754465089,0.714130922658041,1.17080188714679,1.41871629695572,1.55025282754142,1.75400245523236,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,5.61927064957272,2.81308047821288,0,0,33.128363038707,41.3865068954437,46.100607114819,0.238968797952552,0.445597348164788,0,6.8817819284732,6.72188473196017,9.09161889277004,0,1.56134093729095,0.890328018336276,1.62886959353576,5.27904393512113,1.32745138339963,1.21390318077491,0.302323556964751,1.13163047853539,0.295301892880773,0.614870295887855,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0.938686832254841,0.21183207086382,0.220528398054962,1.97863503529776,0.322928853391811,0.904693873922338,1.3130957840345,1.31312719796049,0.582961673259701,9.08583979851498,0,0.82554747185289,0,0,0,0,0,0,0,0,4.27053591334533,2.43983360552218,1.18805874903981,1.46361807210128,0.218362563746178,1.48350781023303,0.909188012978695,0.26175594198403,0.90730481304255,0,0,0,0,0,0.258319646955462,0,0.117357238645754,0.651021924219751,0.209718688851422,0,0.576060012515731,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0.386379188064381,9.19644129710792,10.9890974560359,1.50057865355346,11.5361583928134,0,0,0,0.171853182343688,0,0,0,0,0,0,2.07574695168353,6.3843979744165,3.41467211508268,0.729320151204882,1.67690530102386,0.735374033800057,0.888986911206461,0.412070114477788,0,0.252697211763798,0.25347929989024,0.943131706930381,0.561849044819294,0.576226371643824,1.03383844120104,0,0.463537303779422,0.578727661391115,0.824171801606613,0.441596760403192,0.342869252385415,0.532427418478012,0.476872379894642,0.290692833264657,0.941093804153306,0.338458431566706,0.914639864363863,0,0.679020569229309,0,0.593175090620871,0.29551344712669,0.818462086339379,0.619747364743864,0.578719832943424,0.499621155875892,0.467863216890817,0,0.765153328275374,0.441182838239031,0.231867835620421|short_description=p2@Hoxb6}} | ||
|EntrezGene=15414 | |||
|HGNC= | |||
|MCL_coexpression_id=2010 | |||
|UniProt=A2AA00,P09023 | |||
|association_with_transcript=-41bp_to_NM_008269,uc007lbt.1_5end | |||
|description=CAGE_peak_2_at_Hoxb6_5end | |||
|id=chr11:96160426..96160443,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!3.83e-15!21;UBERON:0001008!1.65e-10!17;UBERON:0002113!2.06e-10!14;UBERON:0003918!2.06e-10!14;UBERON:0005095!2.06e-10!14;UBERON:0007687!2.06e-10!14;UBERON:0005157!3.14e-10!27;UBERON:0006554!4.10e-10!16;UBERON:0005177!7.77e-10!85;UBERON:0002100!3.48e-09!98;UBERON:0003064!1.45e-08!14;UBERON:0002342!4.48e-08!10;UBERON:0005062!4.48e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.31e-22,21;UBERON:0002113,4.11e-16,14;UBERON:0003918,4.11e-16,14;UBERON:0011143,4.11e-16,14;UBERON:0005095,4.11e-16,14;UBERON:0007687,4.11e-16,14;UBERON:0001008,3.00e-12,19;UBERON:0006554,1.37e-11,18;UBERON:0003064,4.21e-11,14;UBERON:0002240,2.49e-09,6;UBERON:0005174,2.49e-09,6;UBERON:0001137,2.49e-09,6;UBERON:0009569,6.00e-09,66;UBERON:0002100,9.11e-09,90;UBERON:0002369,3.22e-08,7;UBERON:0006858,3.22e-08,7;UBERON:0001948,3.76e-08,5;UBERON:0002315,3.76e-08,5;UBERON:0005177,6.32e-08,79;UBERON:0003103,8.16e-08,43;UBERON:0004175,7.21e-07,9;UBERON:0003104,8.91e-07,61;UBERON:0009142,8.91e-07,61;UBERON:0003076,9.83e-07,12;UBERON:0003057,9.83e-07,12 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31668831589172,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.80560271448579,5.98123894195136,10.8292583775392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.5673139862472,21.4242484723065,0,0,0,0,0,0,0,0,0,0,0,0,16.7938293719991,14.5219114415085,32.6199030194276,0,0,0.579728977403356,0,0,0,0,0,0.842666520790511,0.170430322578058,0,0,0,0,0,0,0,0.253359865475099,0,2.51204535381932,0,9.64873903921361,3.46970653532272,2.13125834818499,4.38169444786511,3.16517545160507,4.11560474974967,5.78066320116507,0,1.01219549843938,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0.457500602818626,0,0,0,0,0,4.07357455401265,7.2156042953854,57.1153434060105,0,0,0,0,0,0,0,0,0,0.215567992932842,0.189106080167819,0,0.43839146485515,0,0,0,0.995171334092466,0,0,0,0,0.469052119962192,0,0.710234206755631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55945900642281,3.0190767341857,2.19074684247559,2.01683524623343,1.77902435075896,1.71203063501303,0.949058123089023,0.823494773620054,0.502670417600539,0.397912944082302,0.38992817423824,0,0.432276099749388,0.199141273254367,7.39704813717019,2.74196430263349,4.50830942692322,6.31319116320474,3.29719228184964,4.9095073923223,3.79419222745544,5.75679577120448,5.18095801876537,4.93588655687202,0,0.166845105716094,0.196558995113203,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.369506380333209,13.6433816474749,8.31121379854332,2.8856664581782,1.87752198630802,1.00503754465089,0.714130922658041,1.17080188714679,1.41871629695572,1.55025282754142,1.75400245523236,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,5.61927064957272,2.81308047821288,0,0,33.128363038707,41.3865068954437,46.100607114819,0.238968797952552,0.445597348164788,0,6.8817819284732,6.72188473196017,9.09161889277004,0,1.56134093729095,0.890328018336276,1.62886959353576,5.27904393512113,1.32745138339963,1.21390318077491,0.302323556964751,1.13163047853539,0.295301892880773,0.614870295887855,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0.938686832254841,0.21183207086382,0.220528398054962,1.97863503529776,0.322928853391811,0.904693873922338,1.3130957840345,1.31312719796049,0.582961673259701,9.08583979851498,0,0.82554747185289,0,0,0,0,0,0,0,0,4.27053591334533,2.43983360552218,1.18805874903981,1.46361807210128,0.218362563746178,1.48350781023303,0.909188012978695,0.26175594198403,0.90730481304255,0,0,0,0,0,0.258319646955462,0,0.117357238645754,0.651021924219751,0.209718688851422,0,0.576060012515731,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0.386379188064381,9.19644129710792,10.9890974560359,1.50057865355346,11.5361583928134,0,0,0,0.171853182343688,0,0,0,0,0,0,2.07574695168353,6.3843979744165,3.41467211508268,0.729320151204882,1.67690530102386,0.735374033800057,0.888986911206461,0.412070114477788,0,0.252697211763798,0.25347929989024,0.943131706930381,0.561849044819294,0.576226371643824,1.03383844120104,0,0.463537303779422,0.578727661391115,0.824171801606613,0.441596760403192,0.342869252385415,0.532427418478012,0.476872379894642,0.290692833264657,0.941093804153306,0.338458431566706,0.914639864363863,0,0.679020569229309,0,0.593175090620871,0.29551344712669,0.818462086339379,0.619747364743864,0.578719832943424,0.499621155875892,0.467863216890817,0,0.765153328275374,0.441182838239031,0.231867835620421 | |||
|short_description=p2@Hoxb6 | |||
}} |
Revision as of 21:39, 12 September 2013
Short description: | p2@Hoxb6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Hoxb6_5end |
Coexpression cluster: | MCL_coexpression_mm9:2010 |
Association with transcript: | -41bp_to_NM_008269, uc007lbt.1_5end |
EntrezGene: | Hoxb6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 1.31e-22 | 21 |
kidney | 4.11e-16 | 14 |
kidney mesenchyme | 4.11e-16 | 14 |
upper urinary tract | 4.11e-16 | 14 |
kidney rudiment | 4.11e-16 | 14 |
kidney field | 4.11e-16 | 14 |
renal system | 3.00e-12 | 19 |
urinary system structure | 1.37e-11 | 18 |
intermediate mesoderm | 4.21e-11 | 14 |
spinal cord | 2.49e-09 | 6 |
dorsal region element | 2.49e-09 | 6 |
dorsum | 2.49e-09 | 6 |
subdivision of trunk | 6.00e-09 | 66 |
trunk | 9.11e-09 | 90 |
adrenal gland | 3.22e-08 | 7 |
adrenal/interrenal gland | 3.22e-08 | 7 |
regional part of spinal cord | 3.76e-08 | 5 |
gray matter of spinal cord | 3.76e-08 | 5 |
trunk region element | 6.32e-08 | 79 |
compound organ | 8.16e-08 | 43 |
internal genitalia | 7.21e-07 | 9 |
mesenchyme | 8.91e-07 | 61 |
entire embryonic mesenchyme | 8.91e-07 | 61 |
posterior neural tube | 9.83e-07 | 12 |
chordal neural plate | 9.83e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.