FFCP PHASE1:Mm9::chr11:32433309..32433335,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20868|HGNC=|MCL_coexpression_id=36|UniProt=O55098|association_with_transcript=4bp_to_ENSMUST00000102821_5end|description=CAGE_peak_1_at_Stk10_5end|id=chr11:32433309..32433335,+|ontology_enrichment_celltype=CL:0000988!2.48e-11!32;CL:0002032!2.48e-11!32;CL:0000037!2.48e-11!32;CL:0000566!2.48e-11!32;CL:0000837!2.48e-11!32;CL:0002031!5.34e-11!25;CL:0002320!5.57e-09!46;CL:0000134!5.57e-09!46;CL:0000049!1.59e-07!19;CL:0000219!6.27e-07!54;CL:0000763!7.80e-07!16;CL:0000063!7.93e-07!66|ontology_enrichment_celltype_v019_2=CL:0000988,2.48e-11,32;CL:0002032,2.48e-11,32;CL:0000037,2.48e-11,32;CL:0000837,2.48e-11,32;CL:0002031,5.34e-11,25;CL:0002320,5.64e-09,46;CL:0000134,5.64e-09,46;CL:0000049,1.59e-07,19;CL:0000219,6.33e-07,54;CL:0000763,7.80e-07,16|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.68e-18!48;UBERON:0002390!2.14e-17!45;UBERON:0003061!2.14e-17!45;UBERON:0002405!1.61e-14!70;UBERON:0003081!2.81e-11!88;UBERON:0004177!1.12e-10!29;UBERON:0002384!5.57e-09!46;UBERON:0002204!2.98e-08!32;UBERON:0003408!4.05e-08!24;UBERON:0002370!4.73e-08!23;UBERON:0000974!4.73e-08!23;UBERON:0004807!4.73e-08!23;UBERON:0005058!4.73e-08!23;UBERON:0003351!4.73e-08!23;UBERON:0009113!4.73e-08!23;UBERON:0003295!4.73e-08!23;UBERON:0009722!4.73e-08!23;UBERON:0005562!4.73e-08!23;UBERON:0007690!4.73e-08!23;UBERON:0006562!5.41e-08!24;UBERON:0001557!5.41e-08!24;UBERON:0001042!5.41e-08!24;UBERON:0008814!5.41e-08!24;UBERON:0009145!5.41e-08!24;UBERON:0005057!1.30e-07!51;UBERON:0002371!1.34e-07!16;UBERON:0001474!1.44e-07!22;UBERON:0004765!1.44e-07!22;UBERON:0001434!1.44e-07!22|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.68e-18,48;UBERON:0002405,2.68e-18,48;UBERON:0002390,2.14e-17,45;UBERON:0003061,2.14e-17,45;UBERON:0003081,8.98e-11,87;UBERON:0004177,1.12e-10,29;UBERON:0005057,1.12e-10,29;UBERON:0002384,5.64e-09,46;UBERON:0000077,1.19e-08,35;UBERON:0002204,2.98e-08,32;UBERON:0003408,4.05e-08,24;UBERON:0002370,4.73e-08,23;UBERON:0000974,4.73e-08,23;UBERON:0004807,4.73e-08,23;UBERON:0005058,4.73e-08,23;UBERON:0003351,4.73e-08,23;UBERON:0009113,4.73e-08,23;UBERON:0003295,4.73e-08,23;UBERON:0009722,4.73e-08,23;UBERON:0005562,4.73e-08,23;UBERON:0007690,4.73e-08,23;UBERON:0006562,5.41e-08,24;UBERON:0001557,5.41e-08,24;UBERON:0001042,5.41e-08,24;UBERON:0008814,5.41e-08,24;UBERON:0009145,5.41e-08,24;UBERON:0000926,5.64e-08,120;UBERON:0004120,5.64e-08,120;UBERON:0006603,5.64e-08,120;UBERON:0002371,1.34e-07,16;UBERON:0001474,1.44e-07,22;UBERON:0004765,1.44e-07,22;UBERON:0001434,1.44e-07,22|phase1_expression=2.7225304007815,27.9180326111489,31.8499467572675,79.5480875736963,82.6477954411473,5.70789524500425,5.37309073369709,130.801926646317,32.3814060948834,40.4931630537049,8.21846247482424,13.4017227112165,151.341445259186,130.606081213982,32.9778664197506,25.9168342258977,16.0899231969474,125.080748564541,127.653537686943,117.131543896256,12.246233781754,16.0851340945434,14.6271881917804,14.3993180514066,13.535147582963,34.4539178469012,22.830385796431,14.8675150553263,24.1329742709595,24.6989527164732,9.3126814475228,26.0362576118449,19.6820732027062,15.8481681015439,0.577703239502549,1.32987716286794,0.816677425049476,156.94936152634,121.888313745713,136.116173433188,177.057677897335,146.171733781107,153.906781910876,6.42073771675444,7.70464677268311,5.68994931701213,3.12956537739216,5.01457859675027,7.90870257844099,4.6663175777828,4.19959264876088,2.87505128729943,101.005128846757,236.468058295698,224.510657827166,13.1202312378333,8.02293631828519,10.8291139378263,1.01158230429799,3.1739458756322,3.80298842103708,10.8430250262122,4.4464739805557,45.4449357227106,39.554654502679,50.4440881611731,21.8708080678435,17.28982373947,2.48855069540346,2.02508907497536,1.26194976810829,5.99867067247988,10.8225585066291,2.32732518508413,2.87536413054709,3.67687514644008,6.60695285996332,6.63974158042976,8.1411462625809,2.50583946687368,1.55528994124096,1.56274011167028,5.862842979029,3.37657566019008,10.0846843532695,7.07108605136802,7.40332740155335,2.98239113320481,20.7489769732924,11.4113055761246,11.3047150593654,5.16254326188832,12.2394840067395,1.61910957491345,1.94932925234301,0.896053774194671,11.0951091904084,10.7371103224176,8.83272415649754,10.2468476607999,8.30976176682415,15.3991772897181,10.1922095882658,7.11066703153331,3.030874574157,3.29367825117628,3.0331466700887,14.1588010851634,143.969463307827,12.6175818205101,4.16364784238726,5.1759131313064,5.07354093963329,4.22023393547343,5.87943535678524,4.39833069653864,8.65182387070309,21.6899035379867,60.1535175325915,11.9707468961083,31.8011786582967,21.3345111379498,44.7340226923493,12.8823550685081,15.9179497178226,33.9757883427427,23.8432097766781,14.3976655438418,20.0770958775442,1.9472783122627,2.28750301409313,1.7591609295801,2.08589184230732,2.55715457330331,2.0778804455956,2.92034273521964,4.58277137326423,21.2735919743259,3.28539585963777,4.41927897361595,2.21204753036596,2.98872735763515,3.24111833649629,3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| ||
|EntrezGene=20868 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt=O55098 | |||
|association_with_transcript=4bp_to_ENSMUST00000102821_5end | |||
|description=CAGE_peak_1_at_Stk10_5end | |||
|id=chr11:32433309..32433335,+ | |||
|ontology_enrichment_celltype=CL:0000988!2.48e-11!32;CL:0002032!2.48e-11!32;CL:0000037!2.48e-11!32;CL:0000566!2.48e-11!32;CL:0000837!2.48e-11!32;CL:0002031!5.34e-11!25;CL:0002320!5.57e-09!46;CL:0000134!5.57e-09!46;CL:0000049!1.59e-07!19;CL:0000219!6.27e-07!54;CL:0000763!7.80e-07!16;CL:0000063!7.93e-07!66 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.48e-11,32;CL:0002032,2.48e-11,32;CL:0000037,2.48e-11,32;CL:0000837,2.48e-11,32;CL:0002031,5.34e-11,25;CL:0002320,5.64e-09,46;CL:0000134,5.64e-09,46;CL:0000049,1.59e-07,19;CL:0000219,6.33e-07,54;CL:0000763,7.80e-07,16 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.68e-18!48;UBERON:0002390!2.14e-17!45;UBERON:0003061!2.14e-17!45;UBERON:0002405!1.61e-14!70;UBERON:0003081!2.81e-11!88;UBERON:0004177!1.12e-10!29;UBERON:0002384!5.57e-09!46;UBERON:0002204!2.98e-08!32;UBERON:0003408!4.05e-08!24;UBERON:0002370!4.73e-08!23;UBERON:0000974!4.73e-08!23;UBERON:0004807!4.73e-08!23;UBERON:0005058!4.73e-08!23;UBERON:0003351!4.73e-08!23;UBERON:0009113!4.73e-08!23;UBERON:0003295!4.73e-08!23;UBERON:0009722!4.73e-08!23;UBERON:0005562!4.73e-08!23;UBERON:0007690!4.73e-08!23;UBERON:0006562!5.41e-08!24;UBERON:0001557!5.41e-08!24;UBERON:0001042!5.41e-08!24;UBERON:0008814!5.41e-08!24;UBERON:0009145!5.41e-08!24;UBERON:0005057!1.30e-07!51;UBERON:0002371!1.34e-07!16;UBERON:0001474!1.44e-07!22;UBERON:0004765!1.44e-07!22;UBERON:0001434!1.44e-07!22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.68e-18,48;UBERON:0002405,2.68e-18,48;UBERON:0002390,2.14e-17,45;UBERON:0003061,2.14e-17,45;UBERON:0003081,8.98e-11,87;UBERON:0004177,1.12e-10,29;UBERON:0005057,1.12e-10,29;UBERON:0002384,5.64e-09,46;UBERON:0000077,1.19e-08,35;UBERON:0002204,2.98e-08,32;UBERON:0003408,4.05e-08,24;UBERON:0002370,4.73e-08,23;UBERON:0000974,4.73e-08,23;UBERON:0004807,4.73e-08,23;UBERON:0005058,4.73e-08,23;UBERON:0003351,4.73e-08,23;UBERON:0009113,4.73e-08,23;UBERON:0003295,4.73e-08,23;UBERON:0009722,4.73e-08,23;UBERON:0005562,4.73e-08,23;UBERON:0007690,4.73e-08,23;UBERON:0006562,5.41e-08,24;UBERON:0001557,5.41e-08,24;UBERON:0001042,5.41e-08,24;UBERON:0008814,5.41e-08,24;UBERON:0009145,5.41e-08,24;UBERON:0000926,5.64e-08,120;UBERON:0004120,5.64e-08,120;UBERON:0006603,5.64e-08,120;UBERON:0002371,1.34e-07,16;UBERON:0001474,1.44e-07,22;UBERON:0004765,1.44e-07,22;UBERON:0001434,1.44e-07,22 | |||
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| |||
|short_description=p1@Stk10 | |||
}} |
Revision as of 19:29, 12 September 2013
Short description: | p1@Stk10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Stk10_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 4bp_to_ENSMUST00000102821_5end |
EntrezGene: | Stk10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.48e-11 | 32 |
hematopoietic oligopotent progenitor cell | 2.48e-11 | 32 |
hematopoietic stem cell | 2.48e-11 | 32 |
hematopoietic multipotent progenitor cell | 2.48e-11 | 32 |
hematopoietic lineage restricted progenitor cell | 5.34e-11 | 25 |
connective tissue cell | 5.64e-09 | 46 |
mesenchymal cell | 5.64e-09 | 46 |
common myeloid progenitor | 1.59e-07 | 19 |
motile cell | 6.33e-07 | 54 |
myeloid cell | 7.80e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.68e-18 | 48 |
immune system | 2.68e-18 | 48 |
hematopoietic system | 2.14e-17 | 45 |
blood island | 2.14e-17 | 45 |
lateral plate mesoderm | 8.98e-11 | 87 |
hemopoietic organ | 1.12e-10 | 29 |
immune organ | 1.12e-10 | 29 |
connective tissue | 5.64e-09 | 46 |
mixed endoderm/mesoderm-derived structure | 1.19e-08 | 35 |
musculoskeletal system | 2.98e-08 | 32 |
gland of gut | 4.05e-08 | 24 |
thymus | 4.73e-08 | 23 |
neck | 4.73e-08 | 23 |
respiratory system epithelium | 4.73e-08 | 23 |
hemolymphoid system gland | 4.73e-08 | 23 |
pharyngeal epithelium | 4.73e-08 | 23 |
thymic region | 4.73e-08 | 23 |
pharyngeal gland | 4.73e-08 | 23 |
entire pharyngeal arch endoderm | 4.73e-08 | 23 |
thymus primordium | 4.73e-08 | 23 |
early pharyngeal endoderm | 4.73e-08 | 23 |
pharynx | 5.41e-08 | 24 |
upper respiratory tract | 5.41e-08 | 24 |
chordate pharynx | 5.41e-08 | 24 |
pharyngeal arch system | 5.41e-08 | 24 |
pharyngeal region of foregut | 5.41e-08 | 24 |
mesoderm | 5.64e-08 | 120 |
mesoderm-derived structure | 5.64e-08 | 120 |
presumptive mesoderm | 5.64e-08 | 120 |
bone marrow | 1.34e-07 | 16 |
bone element | 1.44e-07 | 22 |
skeletal element | 1.44e-07 | 22 |
skeletal system | 1.44e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.