FFCP PHASE1:Mm9::chr11:119777617..119777651,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=208092|HGNC=|MCL_coexpression_id=12|UniProt=|association_with_transcript=-393bp_to_ENSMUST00000137055_5end|description=CAGE_peak_2_at_Chmp6_5end|id=chr11:119777617..119777651,+|ontology_enrichment_celltype=CL:0002563!2.53e-11!9;CL:0002251!2.53e-11!9;CL:0000239!1.00e-08!6;CL:0000677!1.00e-08!6;CL:0000212!1.00e-08!6;CL:0000584!1.00e-08!6;CL:0002076!2.63e-08!15;CL:0000066!3.06e-08!25;CL:0000075!2.89e-07!7|ontology_enrichment_celltype_v019_2=CL:0002563,3.42e-20,9;CL:0002251,3.42e-20,9;CL:0000239,3.11e-15,6;CL:0000677,3.11e-15,6;CL:0000584,3.11e-15,6;CL:0000075,6.18e-13,7;CL:0000066,1.36e-11,25;CL:0002076,2.12e-11,15;CL:0000682,1.69e-08,3;CL:0000223,4.09e-08,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!6.17e-20!43;UBERON:0000344!2.20e-18!15;UBERON:0001242!6.13e-16!13;UBERON:0000060!6.13e-16!13;UBERON:0001262!6.13e-16!13;UBERON:0004786!6.13e-16!13;UBERON:0005409!9.61e-15!59;UBERON:0003350!2.53e-11!9;UBERON:0004808!2.53e-11!9;UBERON:0001277!2.53e-11!9;UBERON:0004923!1.58e-09!24;UBERON:0000485!8.96e-09!11;UBERON:0001007!2.09e-08!128;UBERON:0001555!2.09e-08!128;UBERON:0007026!2.09e-08!128;UBERON:0004119!4.48e-08!130;UBERON:0000925!4.48e-08!130;UBERON:0006595!4.48e-08!130;UBERON:0004921!2.69e-07!126;UBERON:0004185!2.69e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.10e-49,31;UBERON:0000344,1.01e-33,15;UBERON:0005409,4.49e-33,47;UBERON:0001242,4.95e-29,13;UBERON:0001262,4.95e-29,13;UBERON:0004786,4.95e-29,13;UBERON:0003350,3.42e-20,9;UBERON:0004808,3.42e-20,9;UBERON:0001277,3.42e-20,9;UBERON:0004923,1.12e-19,24;UBERON:0000485,3.40e-16,11;UBERON:0001007,1.09e-12,116;UBERON:0001555,1.09e-12,116;UBERON:0007026,1.09e-12,116;UBERON:0004119,2.35e-12,118;UBERON:0000925,2.35e-12,118;UBERON:0006595,2.35e-12,118;UBERON:0004921,1.05e-10,114;UBERON:0002108,3.62e-10,4;UBERON:0000331,4.30e-08,3;UBERON:0002116,4.30e-08,3;UBERON:0001204,4.30e-08,3;UBERON:0001168,4.30e-08,3|phase1_expression=0,18.1467211972468,14.5599756604652,22.0798874253986,19.0340377379612,5.70789524500425,7.70921713965235,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0.340173160604279,0,0,10.5594999043648,13.3057383018959,20.0981187440257,13.3536218809313,9.48073423817912,9.88121781173144,9.32511480111744,9.3126814475228,0,0,0,1.73310971850765,1.32987716286794,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0.142371680799103,0,0,0,0,0,0,0,0.649776417447669,0,0.280888840263504,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0,1.25602267690966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,6.13096932500619,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.58214470653014,10.0491215332147,0,0,0,0.201683524623343,1.77902435075896,4.75564065281398,3.79623249235609,4.94096864172033,4.52403375840485,3.38226002469956,3.50935356814416,4.49409704327111,5.40345124686736,5.17767310461355,0.189667900953082,0,0,0,0.193952487167626,1.05203729835478,0.569128834118316,1.32849133181642,1.56998727841375,2.71473760627961,0,0,0,0,0,0,0,0,0,0,0,0,0.624075346229121,0.252578877947112,0,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03371317267288,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0.26175594198403,2.59229946583586,1.24267862617385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0.100966449948148,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0,0,0,0.25347929989024,0,0.187283014939765,0.192075457214608,0.114870937911227,0,0,0.192909220463705,0,0.147198920134397,0.342869252385415,0.354951612318675,0,0,0,0.169229215783353,0.182927972872773,0,0.407412341537585,0,0.118635018124174,0.197008964751127,0.409231043169689,0.309873682371932,0.192906610981141,0.249810577937946,0.233931608445408,0.644613162144895,0,0,0|short_description=p2@Chmp6}} | ||
|EntrezGene=208092 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt= | |||
|association_with_transcript=-393bp_to_ENSMUST00000137055_5end | |||
|description=CAGE_peak_2_at_Chmp6_5end | |||
|id=chr11:119777617..119777651,+ | |||
|ontology_enrichment_celltype=CL:0002563!2.53e-11!9;CL:0002251!2.53e-11!9;CL:0000239!1.00e-08!6;CL:0000677!1.00e-08!6;CL:0000212!1.00e-08!6;CL:0000584!1.00e-08!6;CL:0002076!2.63e-08!15;CL:0000066!3.06e-08!25;CL:0000075!2.89e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.42e-20,9;CL:0002251,3.42e-20,9;CL:0000239,3.11e-15,6;CL:0000677,3.11e-15,6;CL:0000584,3.11e-15,6;CL:0000075,6.18e-13,7;CL:0000066,1.36e-11,25;CL:0002076,2.12e-11,15;CL:0000682,1.69e-08,3;CL:0000223,4.09e-08,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!6.17e-20!43;UBERON:0000344!2.20e-18!15;UBERON:0001242!6.13e-16!13;UBERON:0000060!6.13e-16!13;UBERON:0001262!6.13e-16!13;UBERON:0004786!6.13e-16!13;UBERON:0005409!9.61e-15!59;UBERON:0003350!2.53e-11!9;UBERON:0004808!2.53e-11!9;UBERON:0001277!2.53e-11!9;UBERON:0004923!1.58e-09!24;UBERON:0000485!8.96e-09!11;UBERON:0001007!2.09e-08!128;UBERON:0001555!2.09e-08!128;UBERON:0007026!2.09e-08!128;UBERON:0004119!4.48e-08!130;UBERON:0000925!4.48e-08!130;UBERON:0006595!4.48e-08!130;UBERON:0004921!2.69e-07!126;UBERON:0004185!2.69e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.10e-49,31;UBERON:0000344,1.01e-33,15;UBERON:0005409,4.49e-33,47;UBERON:0001242,4.95e-29,13;UBERON:0001262,4.95e-29,13;UBERON:0004786,4.95e-29,13;UBERON:0003350,3.42e-20,9;UBERON:0004808,3.42e-20,9;UBERON:0001277,3.42e-20,9;UBERON:0004923,1.12e-19,24;UBERON:0000485,3.40e-16,11;UBERON:0001007,1.09e-12,116;UBERON:0001555,1.09e-12,116;UBERON:0007026,1.09e-12,116;UBERON:0004119,2.35e-12,118;UBERON:0000925,2.35e-12,118;UBERON:0006595,2.35e-12,118;UBERON:0004921,1.05e-10,114;UBERON:0002108,3.62e-10,4;UBERON:0000331,4.30e-08,3;UBERON:0002116,4.30e-08,3;UBERON:0001204,4.30e-08,3;UBERON:0001168,4.30e-08,3 | |||
|phase1_expression=0,18.1467211972468,14.5599756604652,22.0798874253986,19.0340377379612,5.70789524500425,7.70921713965235,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0.340173160604279,0,0,10.5594999043648,13.3057383018959,20.0981187440257,13.3536218809313,9.48073423817912,9.88121781173144,9.32511480111744,9.3126814475228,0,0,0,1.73310971850765,1.32987716286794,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0.142371680799103,0,0,0,0,0,0,0,0.649776417447669,0,0.280888840263504,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0,1.25602267690966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,6.13096932500619,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.58214470653014,10.0491215332147,0,0,0,0.201683524623343,1.77902435075896,4.75564065281398,3.79623249235609,4.94096864172033,4.52403375840485,3.38226002469956,3.50935356814416,4.49409704327111,5.40345124686736,5.17767310461355,0.189667900953082,0,0,0,0.193952487167626,1.05203729835478,0.569128834118316,1.32849133181642,1.56998727841375,2.71473760627961,0,0,0,0,0,0,0,0,0,0,0,0,0.624075346229121,0.252578877947112,0,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03371317267288,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0.26175594198403,2.59229946583586,1.24267862617385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0.100966449948148,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0,0,0,0.25347929989024,0,0.187283014939765,0.192075457214608,0.114870937911227,0,0,0.192909220463705,0,0.147198920134397,0.342869252385415,0.354951612318675,0,0,0,0.169229215783353,0.182927972872773,0,0.407412341537585,0,0.118635018124174,0.197008964751127,0.409231043169689,0.309873682371932,0.192906610981141,0.249810577937946,0.233931608445408,0.644613162144895,0,0,0 | |||
|short_description=p2@Chmp6 | |||
}} |
Revision as of 19:03, 12 September 2013
Short description: | p2@Chmp6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Chmp6_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -393bp_to_ENSMUST00000137055_5end |
EntrezGene: | Chmp6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.42e-20 | 9 |
epithelial cell of alimentary canal | 3.42e-20 | 9 |
brush border epithelial cell | 3.11e-15 | 6 |
gut absorptive cell | 3.11e-15 | 6 |
enterocyte | 3.11e-15 | 6 |
columnar/cuboidal epithelial cell | 6.18e-13 | 7 |
epithelial cell | 1.36e-11 | 25 |
endo-epithelial cell | 2.12e-11 | 15 |
M cell of gut | 1.69e-08 | 3 |
endodermal cell | 4.09e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.10e-49 | 31 |
mucosa | 1.01e-33 | 15 |
gastrointestinal system | 4.49e-33 | 47 |
intestinal mucosa | 4.95e-29 | 13 |
wall of intestine | 4.95e-29 | 13 |
gastrointestinal system mucosa | 4.95e-29 | 13 |
epithelium of mucosa | 3.42e-20 | 9 |
gastrointestinal system epithelium | 3.42e-20 | 9 |
intestinal epithelium | 3.42e-20 | 9 |
organ component layer | 1.12e-19 | 24 |
simple columnar epithelium | 3.40e-16 | 11 |
digestive system | 1.09e-12 | 116 |
digestive tract | 1.09e-12 | 116 |
primitive gut | 1.09e-12 | 116 |
endoderm-derived structure | 2.35e-12 | 118 |
endoderm | 2.35e-12 | 118 |
presumptive endoderm | 2.35e-12 | 118 |
subdivision of digestive tract | 1.05e-10 | 114 |
small intestine | 3.62e-10 | 4 |
ileal mucosa | 4.30e-08 | 3 |
ileum | 4.30e-08 | 3 |
mucosa of small intestine | 4.30e-08 | 3 |
wall of small intestine | 4.30e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.