FFCP PHASE1:Mm9::chr10:80488930..80488949,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=22|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:80488930..80488949,-|id=chr10:80488930..80488949,-|ontology_enrichment_celltype=CL:0000117!5.52e-18!23;CL:0000337!5.52e-18!23;CL:0000540!5.67e-15!33;CL:0000047!5.67e-15!33;CL:0000031!5.67e-15!33;CL:0000404!5.67e-15!33;CL:0000393!1.05e-11!39;CL:0000211!1.05e-11!39;CL:0002319!4.74e-10!43;CL:0000221!1.10e-09!44;CL:0000133!1.10e-09!44;CL:0000055!7.90e-08!50|ontology_enrichment_celltype_v019_2=CL:0000120,1.57e-26,3;CL:0000117,7.32e-24,23;CL:0000337,7.32e-24,23;CL:0002611,7.02e-19,2;CL:0000540,1.50e-16,33;CL:0000047,1.50e-16,33;CL:0000031,1.50e-16,33;CL:0000404,1.50e-16,33;CL:0000393,5.94e-14,39;CL:0000211,5.94e-14,39;CL:0002319,1.28e-12,43;CL:0002612,2.12e-12,3;CL:0000221,2.52e-12,44;CL:0000133,2.52e-12,44;CL:0002321,1.40e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!8.08e-19!34;UBERON:0001017!6.03e-15!73;UBERON:0005743!6.03e-15!73;UBERON:0000073!2.79e-14!75;UBERON:0001016!2.79e-14!75;UBERON:0001049!3.17e-14!52;UBERON:0005068!3.17e-14!52;UBERON:0006241!3.17e-14!52;UBERON:0007135!3.17e-14!52;UBERON:0002791!4.51e-13!29;UBERON:0003528!4.51e-13!29;UBERON:0001893!4.51e-13!29;UBERON:0003080!2.15e-11!40;UBERON:0002780!9.17e-11!39;UBERON:0001890!9.17e-11!39;UBERON:0006240!9.17e-11!39;UBERON:0002616!4.33e-10!49;UBERON:0002346!6.23e-10!71;UBERON:0003075!6.23e-10!71;UBERON:0007284!6.23e-10!71;UBERON:0000955!9.28e-10!50;UBERON:0006238!9.28e-10!50;UBERON:0000956!1.31e-09!21;UBERON:0001869!1.31e-09!21;UBERON:0000203!1.31e-09!21;UBERON:0003056!5.04e-09!49;UBERON:0004121!1.38e-08!102;UBERON:0000924!1.38e-08!102;UBERON:0006601!1.38e-08!102;UBERON:0001948!4.30e-08!5;UBERON:0002315!4.30e-08!5;UBERON:0000033!8.27e-08!63|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.55e-28,5;UBERON:0002315,2.55e-28,5;UBERON:0002240,1.10e-23,6;UBERON:0005174,1.10e-23,6;UBERON:0001137,1.10e-23,6;UBERON:0002256,7.02e-19,2;UBERON:0002020,1.67e-12,34;UBERON:0002257,2.12e-12,3;UBERON:0003076,4.68e-12,12;UBERON:0003057,4.68e-12,12;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0001049,4.56e-08,52;UBERON:0005068,4.56e-08,52;UBERON:0006241,4.56e-08,52;UBERON:0007135,4.56e-08,52;UBERON:0000369,5.11e-08,5;UBERON:0002435,5.11e-08,5;UBERON:0000204,5.11e-08,5;UBERON:0010082,5.11e-08,5;UBERON:0000073,9.36e-08,54;UBERON:0000489,5.11e-07,21|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,0.725827286159344,0.270011876663381,0.630974884054146,2.57085885963423,1.54607978666129,0.367472397644862,0.670918297127655,0,0,0.383062014255563,0,1.45074916503213,0.823388792421687,0.52091337055676,0,0,0.30559649555362,1.17851434189467,1.28134512719193,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,1.63350657746724,0.695297280769106,0.255715457330331,0.62336413367868,0.324482526135515,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,4.42489833230923,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0.315508219416257,0,0,0,0,0.283076530788832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0.209718688851422,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,0,0.68741272937475,0,0,0,0.45032120322422,0.453142408984205,0,0,0.399024873401031,0,0,0.209613162627982,0.367687016900028,0.222246727801615,0.206035057238894,0,0,0,0,0.468207537349412,0.256100609619477,0.516919220600519,0.476293691283074,0.231768651889711,0.192909220463705,0,0.294397840268795,0.685738504770831,0.177475806159338,0.476872379894642,0.290692833264657,0.188218760830661,0.507687647350059,0.365855945745545,0,0.135804113845862,0,0.237270036248348,0.0985044823755635,0,0.309873682371932,0.192906610981141,0.499621155875892,0.467863216890817,0.214871054048298,0,0,0|short_description=p@chr10:80488930..80488949,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:80488930..80488949,- | |||
|id=chr10:80488930..80488949,- | |||
|ontology_enrichment_celltype=CL:0000117!5.52e-18!23;CL:0000337!5.52e-18!23;CL:0000540!5.67e-15!33;CL:0000047!5.67e-15!33;CL:0000031!5.67e-15!33;CL:0000404!5.67e-15!33;CL:0000393!1.05e-11!39;CL:0000211!1.05e-11!39;CL:0002319!4.74e-10!43;CL:0000221!1.10e-09!44;CL:0000133!1.10e-09!44;CL:0000055!7.90e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000120,1.57e-26,3;CL:0000117,7.32e-24,23;CL:0000337,7.32e-24,23;CL:0002611,7.02e-19,2;CL:0000540,1.50e-16,33;CL:0000047,1.50e-16,33;CL:0000031,1.50e-16,33;CL:0000404,1.50e-16,33;CL:0000393,5.94e-14,39;CL:0000211,5.94e-14,39;CL:0002319,1.28e-12,43;CL:0002612,2.12e-12,3;CL:0000221,2.52e-12,44;CL:0000133,2.52e-12,44;CL:0002321,1.40e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!8.08e-19!34;UBERON:0001017!6.03e-15!73;UBERON:0005743!6.03e-15!73;UBERON:0000073!2.79e-14!75;UBERON:0001016!2.79e-14!75;UBERON:0001049!3.17e-14!52;UBERON:0005068!3.17e-14!52;UBERON:0006241!3.17e-14!52;UBERON:0007135!3.17e-14!52;UBERON:0002791!4.51e-13!29;UBERON:0003528!4.51e-13!29;UBERON:0001893!4.51e-13!29;UBERON:0003080!2.15e-11!40;UBERON:0002780!9.17e-11!39;UBERON:0001890!9.17e-11!39;UBERON:0006240!9.17e-11!39;UBERON:0002616!4.33e-10!49;UBERON:0002346!6.23e-10!71;UBERON:0003075!6.23e-10!71;UBERON:0007284!6.23e-10!71;UBERON:0000955!9.28e-10!50;UBERON:0006238!9.28e-10!50;UBERON:0000956!1.31e-09!21;UBERON:0001869!1.31e-09!21;UBERON:0000203!1.31e-09!21;UBERON:0003056!5.04e-09!49;UBERON:0004121!1.38e-08!102;UBERON:0000924!1.38e-08!102;UBERON:0006601!1.38e-08!102;UBERON:0001948!4.30e-08!5;UBERON:0002315!4.30e-08!5;UBERON:0000033!8.27e-08!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.55e-28,5;UBERON:0002315,2.55e-28,5;UBERON:0002240,1.10e-23,6;UBERON:0005174,1.10e-23,6;UBERON:0001137,1.10e-23,6;UBERON:0002256,7.02e-19,2;UBERON:0002020,1.67e-12,34;UBERON:0002257,2.12e-12,3;UBERON:0003076,4.68e-12,12;UBERON:0003057,4.68e-12,12;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0001049,4.56e-08,52;UBERON:0005068,4.56e-08,52;UBERON:0006241,4.56e-08,52;UBERON:0007135,4.56e-08,52;UBERON:0000369,5.11e-08,5;UBERON:0002435,5.11e-08,5;UBERON:0000204,5.11e-08,5;UBERON:0010082,5.11e-08,5;UBERON:0000073,9.36e-08,54;UBERON:0000489,5.11e-07,21 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,0.725827286159344,0.270011876663381,0.630974884054146,2.57085885963423,1.54607978666129,0.367472397644862,0.670918297127655,0,0,0.383062014255563,0,1.45074916503213,0.823388792421687,0.52091337055676,0,0,0.30559649555362,1.17851434189467,1.28134512719193,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,1.63350657746724,0.695297280769106,0.255715457330331,0.62336413367868,0.324482526135515,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,4.42489833230923,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0.315508219416257,0,0,0,0,0.283076530788832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0.209718688851422,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,0,0.68741272937475,0,0,0,0.45032120322422,0.453142408984205,0,0,0.399024873401031,0,0,0.209613162627982,0.367687016900028,0.222246727801615,0.206035057238894,0,0,0,0,0.468207537349412,0.256100609619477,0.516919220600519,0.476293691283074,0.231768651889711,0.192909220463705,0,0.294397840268795,0.685738504770831,0.177475806159338,0.476872379894642,0.290692833264657,0.188218760830661,0.507687647350059,0.365855945745545,0,0.135804113845862,0,0.237270036248348,0.0985044823755635,0,0.309873682371932,0.192906610981141,0.499621155875892,0.467863216890817,0.214871054048298,0,0,0 | |||
|short_description=p@chr10:80488930..80488949,- | |||
}} |
Revision as of 17:40, 12 September 2013
Short description: | p@chr10:80488930..80488949, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:80488930..80488949, - |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granule cell | 1.57e-26 | 3 |
CNS neuron (sensu Vertebrata) | 7.32e-24 | 23 |
neuroblast (sensu Vertebrata) | 7.32e-24 | 23 |
neuron of the dorsal spinal cord | 7.02e-19 | 2 |
neuron | 1.50e-16 | 33 |
neuronal stem cell | 1.50e-16 | 33 |
neuroblast | 1.50e-16 | 33 |
electrically signaling cell | 1.50e-16 | 33 |
electrically responsive cell | 5.94e-14 | 39 |
electrically active cell | 5.94e-14 | 39 |
neural cell | 1.28e-12 | 43 |
neuron of the ventral spinal cord | 2.12e-12 | 3 |
ectodermal cell | 2.52e-12 | 44 |
neurectodermal cell | 2.52e-12 | 44 |
embryonic cell | 1.40e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 2.55e-28 | 5 |
gray matter of spinal cord | 2.55e-28 | 5 |
spinal cord | 1.10e-23 | 6 |
dorsal region element | 1.10e-23 | 6 |
dorsum | 1.10e-23 | 6 |
dorsal horn of spinal cord | 7.02e-19 | 2 |
gray matter | 1.67e-12 | 34 |
ventral horn of spinal cord | 2.12e-12 | 3 |
posterior neural tube | 4.68e-12 | 12 |
chordal neural plate | 4.68e-12 | 12 |
central nervous system | 1.42e-11 | 73 |
nervous system | 2.99e-11 | 75 |
ectoderm-derived structure | 9.21e-09 | 95 |
ectoderm | 9.21e-09 | 95 |
presumptive ectoderm | 9.21e-09 | 95 |
neural tube | 4.56e-08 | 52 |
neural rod | 4.56e-08 | 52 |
future spinal cord | 4.56e-08 | 52 |
neural keel | 4.56e-08 | 52 |
corpus striatum | 5.11e-08 | 5 |
striatum | 5.11e-08 | 5 |
ventral part of telencephalon | 5.11e-08 | 5 |
future corpus striatum | 5.11e-08 | 5 |
regional part of nervous system | 9.36e-08 | 54 |
cavitated compound organ | 5.11e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.