FFCP PHASE1:Hg19::chr2:224849494..224849546,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C354|description=CAGE_peak_at_chr2:224849494..224849546,+|id=chr2:224849494..224849546,+|ontology_enrichment_celltype=CL:0000055!7.40e-24!180;CL:0000057!2.14e-15!75;CL:0002620!8.40e-09!23|ontology_enrichment_celltype_v019=CL:0002620;1.03e-09;23!CL:0000499;4.90e-08;28!CL:0002334;8.96e-08;12!CL:0002595;1.85e-07;5!CL:1000306;2.00e-07;4!CL:0002547;2.00e-07;4|ontology_enrichment_celltype_v019_2=CL:0000057,1.53e-18,76;CL:0000723,1.03e-10,433;CL:0000048,2.98e-10,427;CL:0000034,4.71e-10,441;CL:0002620,9.13e-10,23;CL:0002320,3.17e-08,361;CL:0000499,4.04e-08,28;CL:0002334,9.99e-08,12;CL:1000306,2.07e-07,4;CL:0002547,2.07e-07,4;CL:0002595,2.88e-07,5;CL:0000134,3.45e-07,354|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;9.97e-08;5!DOID:450;9.97e-08;5!DOID:66;9.97e-08;5!DOID:423;9.97e-08;5!DOID:0080000;9.97e-08;5!DOID:11722;9.97e-08;5|ontology_enrichment_disease_v019_2=DOID:17,1.28e-07,5;DOID:450,1.28e-07,5;DOID:66,1.28e-07,5;DOID:423,1.28e-07,5;DOID:0080000,1.28e-07,5;DOID:11722,1.28e-07,5|ontology_enrichment_uberon=UBERON:0000914!1.07e-07!83;UBERON:0002329!1.07e-07!83;UBERON:0003077!1.07e-07!83;UBERON:0003059!1.07e-07!83;UBERON:0007282!1.07e-07!83;UBERON:0009618!1.07e-07!83;UBERON:0007285!1.07e-07!83;UBERON:0002097!1.46e-07!40;UBERON:0002199!1.63e-07!45;UBERON:0002416!1.63e-07!45;UBERON:0000486!4.62e-07!82;UBERON:0003102!6.34e-07!95|ontology_enrichment_uberon_v019=UBERON:0004457;4.67e-11;9!UBERON:0000042;4.67e-11;9!UBERON:0003688;1.28e-09;6!UBERON:0002358;1.28e-09;6!UBERON:0003684;1.28e-09;6!UBERON:0001178;1.28e-09;6!UBERON:0002097;2.74e-08;41!UBERON:0002199;1.22e-07;46!UBERON:0002416;1.22e-07;46!UBERON:0003834;1.85e-07;5!UBERON:0001533;1.85e-07;5!UBERON:0004797;2.00e-07;4!UBERON:0000415;2.00e-07;4!UBERON:0007240;2.00e-07;4!UBERON:0005742;2.00e-07;4!UBERON:0005734;2.00e-07;4!UBERON:0004664;2.00e-07;4!UBERON:0004663;2.00e-07;4!UBERON:0004923;5.51e-07;55|ontology_enrichment_uberon_v019_2=UBERON:0002199,8.38e-11,46;UBERON:0002416,8.38e-11,46;UBERON:0004923,1.49e-10,66;UBERON:0002097,1.52e-10,41;UBERON:0003688,1.16e-09,6;UBERON:0002358,1.16e-09,6;UBERON:0003684,1.16e-09,6;UBERON:0001178,1.16e-09,6;UBERON:0003102,1.84e-08,99;UBERON:0002384,5.86e-08,371;UBERON:0004457,7.74e-08,12;UBERON:0000042,7.74e-08,12;UBERON:0000415,2.07e-07,4;UBERON:0007240,2.07e-07,4;UBERON:0005742,2.07e-07,4;UBERON:0005734,2.07e-07,4;UBERON:0004664,2.07e-07,4;UBERON:0004663,2.07e-07,4;UBERON:0003834,2.88e-07,5;UBERON:0001533,2.88e-07,5|phase1_expression=5.08699461957559,1.07050261945492,2.96004248601539,3.00219895059391,2.68176656656373,20.0637860543085,0,1.26343974685366,0.261185628199839,0,0,0,0.263766978228454,1.73272894144065,1.98838425436749,0,0,0,0.975865597581014,0,0.204000691244253,0.313454721478088,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,1.53435074212236,7.59022220007589,0.50133791063589,9.12533069453189,0.795285947051099,19.4653948121054,0.0945348171640679,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.3516256330706,7.09130865321647,6.62045904066094,28.3968254541326,4.25602058638028,2.80338800071154,0,2.96001058100592,0,0.67355336034844,0.163461903113459,0.151357427644931,0.576175924479999,0.70296429550139,0.936480230490962,0,4.78235777765763,0.23486899728753,0.323745888736263,0.702254033511242,0.408308342509787,1.10550885580591,0.206651562351531,4.75201142912821,2.47266929278557,0,0,0.841680569770331,0.125118519871964,0,0.438977620880838,0.919463387397059,1.35214253015937,1.70148274740032,1.07633781413317,4.48470516518992,3.60284231971255,7.80236849819446,3.81294358182224,4.12224864073007,5.95573940261087,3.54430297706659,1.65642908774038,0.252433774244115,3.12969655383818,1.93975268182574,11.3603069605317,2.31729825923573,0.67824236924195,1.35282597214308,0,1.14721838155602,0,0.265059536642971,0.116193942869518,0.310983165046111,0.756962552626885,0,1.56449532329816,10.935095949279,0,0.928735856063958,2.88751792667834,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0,0.588664395376038,1.15424147083917,0,0,0,0,0,0,0,0,0,0.171567810298526,2.74375713521564,0,1.50793458617446,0.555530670951178,0,0,0,0.115930404975077,0.352226082707465,0.577465791044295,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0.671928512795438,0.425325291727159,1.79117045405697,0.290633938513962,0.383382679165211,0,0,0,0,0,0.444485260045183,0.763976851116555,0,1.71072446022705,1.7480673759565,1.20137223137567,0.85747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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_at_chr2:224849494..224849546,+ | |||
|id=chr2:224849494..224849546,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.40e-24!180;CL:0000057!2.14e-15!75;CL:0002620!8.40e-09!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.03e-09;23!CL:0000499;4.90e-08;28!CL:0002334;8.96e-08;12!CL:0002595;1.85e-07;5!CL:1000306;2.00e-07;4!CL:0002547;2.00e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.53e-18,76;CL:0000723,1.03e-10,433;CL:0000048,2.98e-10,427;CL:0000034,4.71e-10,441;CL:0002620,9.13e-10,23;CL:0002320,3.17e-08,361;CL:0000499,4.04e-08,28;CL:0002334,9.99e-08,12;CL:1000306,2.07e-07,4;CL:0002547,2.07e-07,4;CL:0002595,2.88e-07,5;CL:0000134,3.45e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;9.97e-08;5!DOID:450;9.97e-08;5!DOID:66;9.97e-08;5!DOID:423;9.97e-08;5!DOID:0080000;9.97e-08;5!DOID:11722;9.97e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.28e-07,5;DOID:450,1.28e-07,5;DOID:66,1.28e-07,5;DOID:423,1.28e-07,5;DOID:0080000,1.28e-07,5;DOID:11722,1.28e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.07e-07!83;UBERON:0002329!1.07e-07!83;UBERON:0003077!1.07e-07!83;UBERON:0003059!1.07e-07!83;UBERON:0007282!1.07e-07!83;UBERON:0009618!1.07e-07!83;UBERON:0007285!1.07e-07!83;UBERON:0002097!1.46e-07!40;UBERON:0002199!1.63e-07!45;UBERON:0002416!1.63e-07!45;UBERON:0000486!4.62e-07!82;UBERON:0003102!6.34e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.67e-11;9!UBERON:0000042;4.67e-11;9!UBERON:0003688;1.28e-09;6!UBERON:0002358;1.28e-09;6!UBERON:0003684;1.28e-09;6!UBERON:0001178;1.28e-09;6!UBERON:0002097;2.74e-08;41!UBERON:0002199;1.22e-07;46!UBERON:0002416;1.22e-07;46!UBERON:0003834;1.85e-07;5!UBERON:0001533;1.85e-07;5!UBERON:0004797;2.00e-07;4!UBERON:0000415;2.00e-07;4!UBERON:0007240;2.00e-07;4!UBERON:0005742;2.00e-07;4!UBERON:0005734;2.00e-07;4!UBERON:0004664;2.00e-07;4!UBERON:0004663;2.00e-07;4!UBERON:0004923;5.51e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,8.38e-11,46;UBERON:0002416,8.38e-11,46;UBERON:0004923,1.49e-10,66;UBERON:0002097,1.52e-10,41;UBERON:0003688,1.16e-09,6;UBERON:0002358,1.16e-09,6;UBERON:0003684,1.16e-09,6;UBERON:0001178,1.16e-09,6;UBERON:0003102,1.84e-08,99;UBERON:0002384,5.86e-08,371;UBERON:0004457,7.74e-08,12;UBERON:0000042,7.74e-08,12;UBERON:0000415,2.07e-07,4;UBERON:0007240,2.07e-07,4;UBERON:0005742,2.07e-07,4;UBERON:0005734,2.07e-07,4;UBERON:0004664,2.07e-07,4;UBERON:0004663,2.07e-07,4;UBERON:0003834,2.88e-07,5;UBERON:0001533,2.88e-07,5 | |||
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| |||
|short_description=p@chr2:224849494..224849546,+ | |||
}} |
Revision as of 17:07, 12 September 2013
Short description: | p@chr2:224849494..224849546, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:224849494..224849546, + |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.53e-18 | 76 |
somatic stem cell | 1.03e-10 | 433 |
multi fate stem cell | 2.98e-10 | 427 |
stem cell | 4.71e-10 | 441 |
skin fibroblast | 9.13e-10 | 23 |
connective tissue cell | 3.17e-08 | 361 |
stromal cell | 4.04e-08 | 28 |
preadipocyte | 9.99e-08 | 12 |
fibroblast of tunica adventitia of artery | 2.07e-07 | 4 |
fibroblast of the aortic adventitia | 2.07e-07 | 4 |
smooth muscle cell of the subclavian artery | 2.88e-07 | 5 |
mesenchymal cell | 3.45e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
integument | 8.38e-11 | 46 |
integumental system | 8.38e-11 | 46 |
organ component layer | 1.49e-10 | 66 |
skin of body | 1.52e-10 | 41 |
omentum | 1.16e-09 | 6 |
peritoneum | 1.16e-09 | 6 |
abdominal cavity | 1.16e-09 | 6 |
visceral peritoneum | 1.16e-09 | 6 |
surface structure | 1.84e-08 | 99 |
connective tissue | 5.86e-08 | 371 |
cavity lining | 7.74e-08 | 12 |
serous membrane | 7.74e-08 | 12 |
artery wall | 2.07e-07 | 4 |
tunica adventitia of artery | 2.07e-07 | 4 |
adventitia | 2.07e-07 | 4 |
tunica adventitia of blood vessel | 2.07e-07 | 4 |
aorta tunica adventitia | 2.07e-07 | 4 |
aorta wall | 2.07e-07 | 4 |
thoracic segment blood vessel | 2.88e-07 | 5 |
subclavian artery | 2.88e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.28e-07 | 5 |
myotonic disease | 1.28e-07 | 5 |
muscle tissue disease | 1.28e-07 | 5 |
myopathy | 1.28e-07 | 5 |
muscular disease | 1.28e-07 | 5 |
myotonic dystrophy | 1.28e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.