FFCP PHASE1:Hg19::chr21:47545961..47545972,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1292|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=2212|TSSclassifier=W|UniProt=|association_with_transcript=-431bp_to_uc002zic.1_5end|coexpression_cluster_id=C198|description=CAGE_peak_37_at_COL6A2_5end|id=chr21:47545961..47545972,+|ontology_enrichment_celltype=CL:0000055!3.84e-36!180;CL:0000057!9.08e-25!75;CL:0000048!1.06e-16!430;CL:0000723!8.53e-16!436;CL:0000034!1.82e-15!444;CL:0002620!8.87e-14!23;CL:0000183!2.95e-12!59;CL:0000680!5.18e-12!57;CL:0000056!5.18e-12!57;CL:0000355!5.18e-12!57;CL:0000393!1.96e-11!60;CL:0000211!1.96e-11!60;CL:0000187!9.77e-11!54;CL:0002371!1.37e-09!591;CL:0002320!1.44e-09!365;CL:0002334!3.61e-08!12;CL:0000144!7.71e-08!625;CL:0000192!1.35e-07!42;CL:0000514!1.35e-07!42;CL:0000134!1.93e-07!358|ontology_enrichment_celltype_v019=CL:0002570;3.21e-13;8!CL:0000499;9.03e-11;28!CL:0000135;9.55e-11;3!CL:0000388;9.55e-11;3!CL:0002564;4.05e-09;3!CL:0000723;1.54e-07;61!CL:0002583;1.96e-07;2!CL:0002539;3.01e-07;10!CL:0000134;8.43e-07;55|ontology_enrichment_celltype_v019_2=CL:0002570,2.29e-13,8;CL:0000499,6.87e-11,28;CL:0000135,1.24e-10,3;CL:0000388,1.24e-10,3;CL:0002320,4.62e-10,361;CL:0000048,3.83e-09,427;CL:0000723,7.71e-09,433;CL:0002564,9.32e-09,3;CL:0000034,1.90e-08,441;CL:0002583,1.15e-07,2;CL:0002539,1.89e-07,10;CL:0000057,2.17e-07,76;CL:0000134,2.23e-07,354|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!3.42e-16!83;UBERON:0002329!3.42e-16!83;UBERON:0003077!3.42e-16!83;UBERON:0003059!3.42e-16!83;UBERON:0007282!3.42e-16!83;UBERON:0009618!3.42e-16!83;UBERON:0007285!3.42e-16!83;UBERON:0004290!2.06e-15!70;UBERON:0000486!9.04e-13!82;UBERON:0002385!6.50e-12!63;UBERON:0001015!6.50e-12!63;UBERON:0000383!6.50e-12!63;UBERON:0005256!1.62e-11!143;UBERON:0001134!2.19e-11!61;UBERON:0002036!2.19e-11!61;UBERON:0003082!2.19e-11!61;UBERON:0002199!2.33e-11!45;UBERON:0002416!2.33e-11!45;UBERON:0002384!1.76e-09!375;UBERON:0002097!2.08e-09!40;UBERON:0003102!3.76e-09!95;UBERON:0002100!1.26e-08!216;UBERON:0001013!4.76e-07!14|ontology_enrichment_uberon_v019=UBERON:0004905;3.03e-12;8!UBERON:0000982;3.03e-12;8!UBERON:0004770;3.03e-12;8!UBERON:0007846;9.55e-11;3!UBERON:0000043;9.55e-11;3!UBERON:0007845;9.55e-11;3!UBERON:0001013;1.26e-09;14!UBERON:0011135;2.72e-09;5!UBERON:0002216;2.72e-09;5!UBERON:0011134;2.72e-09;5!UBERON:0002209;2.72e-09;5!UBERON:0002213;2.72e-09;5!UBERON:0007844;2.72e-09;5!UBERON:0011138;2.72e-09;5!UBERON:0001130;2.72e-09;5!UBERON:0001066;2.72e-09;5!UBERON:0001468;2.72e-09;5!UBERON:0002242;4.05e-09;3!UBERON:0004237;3.01e-07;10!UBERON:0004695;3.01e-07;10!UBERON:0002111;3.01e-07;10!UBERON:0004178;3.01e-07;10!UBERON:0002384;5.89e-07;198|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.60e-12,8;UBERON:0000982,2.60e-12,8;UBERON:0004770,2.60e-12,8;UBERON:0007846,1.24e-10,3;UBERON:0000043,1.24e-10,3;UBERON:0007845,1.24e-10,3;UBERON:0001013,8.38e-10,14;UBERON:0002384,1.81e-09,371;UBERON:0011135,4.40e-09,5;UBERON:0002216,4.40e-09,5;UBERON:0011134,4.40e-09,5;UBERON:0002209,4.40e-09,5;UBERON:0002213,4.40e-09,5;UBERON:0005856,4.40e-09,5;UBERON:0005866,4.40e-09,5;UBERON:0005863,4.40e-09,5;UBERON:0007844,4.40e-09,5;UBERON:0011138,4.40e-09,5;UBERON:0001130,4.40e-09,5;UBERON:0001066,4.40e-09,5;UBERON:0001468,4.40e-09,5;UBERON:0002242,9.32e-09,3;UBERON:0003068,9.32e-09,3;UBERON:0002328,9.32e-09,3;UBERON:0004880,9.32e-09,3;UBERON:0004237,1.89e-07,10;UBERON:0004695,1.89e-07,10;UBERON:0002111,1.89e-07,10;UBERON:0004178,1.89e-07,10|phase1_expression=0.54503513781167,2.35510576280081,0.704772020479856,1.0007329835313,0.446961094427288,1.74467704820074,0,0.631719873426831,0.522371256399677,0,0,0,0,0.618831764800233,1.65698687863958,2.6893005858071,1.80808358407193,2.19093027116212,1.95173119516203,0.369363174230364,0.816002764977012,1.56727360739044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,1.00267582127178,2.17269778441236,0,0.973269740605272,0,0,0.087834785693126,0.130979075497713,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.633152558322899,0.529636723252875,2.29469296599051,0.709336764396714,0,0,0.74000264525148,0,0.269421344139376,0.163461903113459,0.454072282934794,0.576175924479999,0,0.936480230490962,0.570471821544449,2.24173020827702,0.587172493218824,0.809364721840658,0.140450806702248,0,1.71968044236475,0.619954687054593,1.18800285728205,0.989067717114227,0.910161361938026,0.718618141816238,0.168336113954066,0.250237039743928,0,0,0.612975591598039,0.300476117813194,0.113432183160021,0.717558542755448,2.34913127700424,0.635795703478686,0.600182192168805,0.618315175430633,0.257640540045629,0.37223371266318,0.843881661206331,0.487185025805993,0.7573013227323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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-431bp_to_uc002zic.1_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_37_at_COL6A2_5end | |||
|id=chr21:47545961..47545972,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.84e-36!180;CL:0000057!9.08e-25!75;CL:0000048!1.06e-16!430;CL:0000723!8.53e-16!436;CL:0000034!1.82e-15!444;CL:0002620!8.87e-14!23;CL:0000183!2.95e-12!59;CL:0000680!5.18e-12!57;CL:0000056!5.18e-12!57;CL:0000355!5.18e-12!57;CL:0000393!1.96e-11!60;CL:0000211!1.96e-11!60;CL:0000187!9.77e-11!54;CL:0002371!1.37e-09!591;CL:0002320!1.44e-09!365;CL:0002334!3.61e-08!12;CL:0000144!7.71e-08!625;CL:0000192!1.35e-07!42;CL:0000514!1.35e-07!42;CL:0000134!1.93e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0002570;3.21e-13;8!CL:0000499;9.03e-11;28!CL:0000135;9.55e-11;3!CL:0000388;9.55e-11;3!CL:0002564;4.05e-09;3!CL:0000723;1.54e-07;61!CL:0002583;1.96e-07;2!CL:0002539;3.01e-07;10!CL:0000134;8.43e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002570,2.29e-13,8;CL:0000499,6.87e-11,28;CL:0000135,1.24e-10,3;CL:0000388,1.24e-10,3;CL:0002320,4.62e-10,361;CL:0000048,3.83e-09,427;CL:0000723,7.71e-09,433;CL:0002564,9.32e-09,3;CL:0000034,1.90e-08,441;CL:0002583,1.15e-07,2;CL:0002539,1.89e-07,10;CL:0000057,2.17e-07,76;CL:0000134,2.23e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.42e-16!83;UBERON:0002329!3.42e-16!83;UBERON:0003077!3.42e-16!83;UBERON:0003059!3.42e-16!83;UBERON:0007282!3.42e-16!83;UBERON:0009618!3.42e-16!83;UBERON:0007285!3.42e-16!83;UBERON:0004290!2.06e-15!70;UBERON:0000486!9.04e-13!82;UBERON:0002385!6.50e-12!63;UBERON:0001015!6.50e-12!63;UBERON:0000383!6.50e-12!63;UBERON:0005256!1.62e-11!143;UBERON:0001134!2.19e-11!61;UBERON:0002036!2.19e-11!61;UBERON:0003082!2.19e-11!61;UBERON:0002199!2.33e-11!45;UBERON:0002416!2.33e-11!45;UBERON:0002384!1.76e-09!375;UBERON:0002097!2.08e-09!40;UBERON:0003102!3.76e-09!95;UBERON:0002100!1.26e-08!216;UBERON:0001013!4.76e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;3.03e-12;8!UBERON:0000982;3.03e-12;8!UBERON:0004770;3.03e-12;8!UBERON:0007846;9.55e-11;3!UBERON:0000043;9.55e-11;3!UBERON:0007845;9.55e-11;3!UBERON:0001013;1.26e-09;14!UBERON:0011135;2.72e-09;5!UBERON:0002216;2.72e-09;5!UBERON:0011134;2.72e-09;5!UBERON:0002209;2.72e-09;5!UBERON:0002213;2.72e-09;5!UBERON:0007844;2.72e-09;5!UBERON:0011138;2.72e-09;5!UBERON:0001130;2.72e-09;5!UBERON:0001066;2.72e-09;5!UBERON:0001468;2.72e-09;5!UBERON:0002242;4.05e-09;3!UBERON:0004237;3.01e-07;10!UBERON:0004695;3.01e-07;10!UBERON:0002111;3.01e-07;10!UBERON:0004178;3.01e-07;10!UBERON:0002384;5.89e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.60e-12,8;UBERON:0000982,2.60e-12,8;UBERON:0004770,2.60e-12,8;UBERON:0007846,1.24e-10,3;UBERON:0000043,1.24e-10,3;UBERON:0007845,1.24e-10,3;UBERON:0001013,8.38e-10,14;UBERON:0002384,1.81e-09,371;UBERON:0011135,4.40e-09,5;UBERON:0002216,4.40e-09,5;UBERON:0011134,4.40e-09,5;UBERON:0002209,4.40e-09,5;UBERON:0002213,4.40e-09,5;UBERON:0005856,4.40e-09,5;UBERON:0005866,4.40e-09,5;UBERON:0005863,4.40e-09,5;UBERON:0007844,4.40e-09,5;UBERON:0011138,4.40e-09,5;UBERON:0001130,4.40e-09,5;UBERON:0001066,4.40e-09,5;UBERON:0001468,4.40e-09,5;UBERON:0002242,9.32e-09,3;UBERON:0003068,9.32e-09,3;UBERON:0002328,9.32e-09,3;UBERON:0004880,9.32e-09,3;UBERON:0004237,1.89e-07,10;UBERON:0004695,1.89e-07,10;UBERON:0002111,1.89e-07,10;UBERON:0004178,1.89e-07,10 | |||
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| |||
|short_description=p37@COL6A2 | |||
}} |
Revision as of 10:50, 12 September 2013
Short description: | p37@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_37_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -431bp_to_uc002zic.1_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of adipose | 2.29e-13 | 8 |
stromal cell | 6.87e-11 | 28 |
fibrocyte | 1.24e-10 | 3 |
tendon cell | 1.24e-10 | 3 |
connective tissue cell | 4.62e-10 | 361 |
multi fate stem cell | 3.83e-09 | 427 |
somatic stem cell | 7.71e-09 | 433 |
nucleus pulposus cell of intervertebral disc | 9.32e-09 | 3 |
stem cell | 1.90e-08 | 441 |
subcutaneous preadipocyte | 1.15e-07 | 2 |
aortic smooth muscle cell | 1.89e-07 | 10 |
fibroblast | 2.17e-07 | 76 |
mesenchymal cell | 2.23e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
articulation | 2.60e-12 | 8 |
skeletal joint | 2.60e-12 | 8 |
articular system | 2.60e-12 | 8 |
dense regular connective tissue | 1.24e-10 | 3 |
tendon | 1.24e-10 | 3 |
regular connective tissue | 1.24e-10 | 3 |
adipose tissue | 8.38e-10 | 14 |
connective tissue | 1.81e-09 | 371 |
intervertebral cartilage | 4.40e-09 | 5 |
symphysis | 4.40e-09 | 5 |
nonsynovial joint | 4.40e-09 | 5 |
fibrous joint | 4.40e-09 | 5 |
cartilaginous joint | 4.40e-09 | 5 |
developing mesenchymal condensation | 4.40e-09 | 5 |
pre-cartilage condensation | 4.40e-09 | 5 |
cartilaginous condensation | 4.40e-09 | 5 |
cartilage element | 4.40e-09 | 5 |
post-cranial axial skeletal system | 4.40e-09 | 5 |
vertebral column | 4.40e-09 | 5 |
intervertebral disk | 4.40e-09 | 5 |
intervertebral joint | 4.40e-09 | 5 |
nucleus pulposus | 9.32e-09 | 3 |
axial mesoderm | 9.32e-09 | 3 |
notochord | 9.32e-09 | 3 |
chordamesoderm | 9.32e-09 | 3 |
blood vessel smooth muscle | 1.89e-07 | 10 |
arterial system smooth muscle | 1.89e-07 | 10 |
artery smooth muscle tissue | 1.89e-07 | 10 |
aorta smooth muscle tissue | 1.89e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.